Wall clock time and date at job start Mon Mar 8 2021 02:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35973 * 116.99985 * 2 1 4 4 C 1.39443 * 120.12069 * 179.97438 * 3 2 1 5 5 O 1.34778 * 133.24482 * 359.97438 * 4 3 2 6 6 C 1.34931 * 110.84593 * 180.02562 * 5 4 3 7 7 C 1.46986 * 125.14219 * 179.97438 * 6 5 4 8 8 O 1.21650 * 119.99938 * 179.97438 * 7 6 5 9 9 N 1.34775 * 120.00192 * 359.96687 * 7 6 5 10 10 C 1.46496 * 120.00169 * 179.97438 * 9 7 6 11 11 H 1.08997 * 112.84770 * 23.81801 * 10 9 7 12 12 C 1.53791 * 113.61355 * 155.00404 * 10 9 7 13 13 C 1.53782 * 87.07783 * 89.11726 * 12 10 9 14 14 H 1.08994 * 113.61602 * 270.88435 * 13 12 10 15 15 C 1.50696 * 113.60953 * 139.98023 * 13 12 10 16 16 C 1.38209 * 119.97800 * 299.72649 * 15 13 12 17 17 C 1.38481 * 120.02654 * 179.76805 * 16 15 13 18 18 F 1.35098 * 120.01113 * 180.23138 * 17 16 15 19 19 C 1.38411 * 119.97322 * 0.50916 * 17 16 15 20 20 C 1.38422 * 119.95170 * 359.74343 * 19 17 16 21 21 F 1.35102 * 120.01453 * 179.97438 * 20 19 17 22 22 C 1.38207 * 119.97741 * 120.00122 * 15 13 12 23 23 C 1.53775 * 113.61831 * 252.50077 * 10 9 7 24 24 C 1.35816 * 109.71816 * 359.97438 * 6 5 4 25 25 C 1.40608 * 119.13652 * 179.97438 * 4 3 2 26 26 C 1.39779 * 120.12106 * 0.03031 * 25 4 3 27 27 C 1.50699 * 120.09645 * 179.97438 * 26 25 4 28 28 O 1.42894 * 109.47188 * 74.99934 * 27 26 25 29 29 Si 1.86298 * 109.46950 * 195.00607 * 27 26 25 30 30 C 1.36633 * 119.80632 * 0.25741 * 26 25 4 31 31 C 1.38255 * 120.12029 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.46947 * 299.99763 * 1 2 3 33 33 H 1.08996 * 109.47019 * 60.00013 * 1 2 3 34 34 H 1.08996 * 109.46444 * 179.97438 * 1 2 3 35 35 H 0.97004 * 119.99849 * 0.02562 * 9 7 6 36 36 H 1.08997 * 113.61492 * 203.67018 * 12 10 9 37 37 H 1.09006 * 113.60837 * 334.57061 * 12 10 9 38 38 H 1.07996 * 119.98621 * 359.97438 * 16 15 13 39 39 H 1.08001 * 120.02926 * 179.77114 * 19 17 16 40 40 H 1.08002 * 119.98370 * 359.95470 * 22 15 13 41 41 H 1.09001 * 113.61559 * 25.43494 * 23 10 9 42 42 H 1.09008 * 113.61274 * 156.33620 * 23 10 9 43 43 H 1.07991 * 126.95780 * 180.02562 * 24 6 5 44 44 H 1.09006 * 109.46662 * 315.00203 * 27 26 25 45 45 H 0.96709 * 113.99337 * 60.00344 * 28 27 26 46 46 H 1.48506 * 109.99834 * 180.02562 * 29 27 26 47 47 H 1.48502 * 110.00011 * 301.31529 * 29 27 26 48 48 H 1.08004 * 119.74444 * 179.74516 * 30 26 25 49 49 H 1.08006 * 119.66173 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4387 1.2874 0.0005 5 8 4.4141 0.3574 0.0016 6 6 5.6318 0.9387 0.0023 7 6 6.9131 0.2185 0.0040 8 8 7.9596 0.8389 0.0040 9 7 6.9288 -1.1291 0.0056 10 6 8.2058 -1.8469 0.0068 11 1 9.0249 -1.2527 0.4118 12 6 8.1170 -3.2613 0.6039 13 6 7.7808 -3.7535 -0.8137 14 1 6.7144 -3.7406 -1.0389 15 6 8.4401 -5.0606 -1.1710 16 6 9.8186 -5.1608 -1.1731 17 6 10.4254 -6.3628 -1.4966 18 9 11.7728 -6.4617 -1.4940 19 6 9.6512 -7.4612 -1.8282 20 6 8.2708 -7.3582 -1.8309 21 9 7.5139 -8.4293 -2.1549 22 6 7.6661 -6.1567 -1.5019 23 6 8.5356 -2.5197 -1.3361 24 6 5.4945 2.2899 0.0011 25 6 4.0554 2.5511 0.0000 26 6 3.2765 3.7117 -0.0005 27 6 3.9381 5.0657 -0.0005 28 8 4.4609 5.3404 -1.3017 29 14 2.6862 6.3685 0.4537 30 6 1.9136 3.6151 0.0050 31 6 1.2958 2.3726 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3632 -1.0277 -0.0005 35 1 6.0943 -1.6238 0.0053 36 1 9.0680 -3.6361 0.9822 37 1 7.2995 -3.3847 1.3144 38 1 10.4226 -4.3024 -0.9191 39 1 10.1236 -8.3980 -2.0843 40 1 6.5891 -6.0762 -1.5035 41 1 8.0561 -2.0446 -2.1919 42 1 9.6012 -2.6918 -1.4882 43 1 6.2874 3.0231 0.0010 44 1 4.7503 5.0732 0.7265 45 1 3.7923 5.3495 -2.0003 46 1 3.3261 7.7087 0.4566 47 1 1.5579 6.3471 -0.5116 48 1 1.3128 4.5126 0.0088 49 1 0.2174 2.3120 -0.0005 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705374_6672420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 02:29:11 Heat of formation + Delta-G solvation = -92.562263 kcal Electronic energy + Delta-G solvation = -38278.511667 eV Core-core repulsion = 32776.676257 eV Total energy + Delta-G solvation = -5501.835410 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.131 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -50.09272 -50.07071 -43.76989 -41.68525 -40.74440 -40.21265 -39.12913 -38.69873 -37.11852 -34.81092 -33.66611 -32.19124 -31.84260 -31.38078 -30.90433 -28.58130 -26.88883 -26.75282 -26.26403 -25.07443 -24.01696 -23.93933 -22.98498 -22.13458 -21.78749 -20.47849 -19.90199 -19.12906 -18.87584 -18.54018 -18.14293 -17.87611 -17.76996 -17.44737 -17.23496 -17.06428 -16.98751 -16.75113 -16.60174 -16.38896 -16.21613 -16.07251 -15.87883 -15.84195 -15.58931 -15.36127 -15.01560 -14.64287 -14.58641 -14.52495 -14.20636 -14.10296 -13.74442 -13.53075 -13.49611 -13.43123 -13.26384 -13.11509 -12.95739 -12.81651 -12.47668 -12.25955 -12.16746 -12.12912 -11.76865 -11.66517 -11.63438 -11.35951 -11.03070 -10.61092 -10.34054 -9.93269 -9.84437 -9.82464 -9.01738 -4.89041 -0.68760 -0.12195 -0.10411 0.08964 0.59875 1.15222 1.30423 1.59456 1.84811 1.86154 1.98324 2.13312 2.23450 2.38473 2.75611 3.15440 3.22973 3.35346 3.38838 3.51492 3.54268 3.60499 3.65319 3.75136 3.80730 3.85761 3.86330 3.89856 3.97421 4.04492 4.09165 4.16706 4.33114 4.42566 4.44038 4.48872 4.54437 4.68858 4.70412 4.73762 4.75531 4.77201 4.78566 4.83110 4.86205 4.94657 4.95253 5.00809 5.04101 5.05864 5.20030 5.23713 5.33850 5.48114 5.58113 5.69691 6.17367 6.28114 6.49838 6.80302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.332 6.332 3 C 0.138 3.862 4 C 0.023 3.977 5 O -0.179 6.179 6 C -0.033 4.033 7 C 0.606 3.394 8 O -0.543 6.543 9 N -0.686 5.686 10 C 0.111 3.889 11 H 0.100 0.900 12 C -0.123 4.123 13 C -0.070 4.070 14 H 0.119 0.881 15 C -0.008 4.008 16 C -0.158 4.158 17 C 0.119 3.881 18 F -0.140 7.140 19 C -0.204 4.204 20 C 0.118 3.882 21 F -0.140 7.140 22 C -0.156 4.156 23 C -0.142 4.142 24 C -0.113 4.113 25 C -0.096 4.096 26 C -0.100 4.100 27 C -0.089 4.089 28 O -0.548 6.548 29 Si 0.781 3.219 30 C -0.089 4.089 31 C -0.166 4.166 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.418 0.582 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.160 0.840 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.171 0.829 44 H 0.115 0.885 45 H 0.386 0.614 46 H -0.305 1.305 47 H -0.263 1.263 48 H 0.165 0.835 49 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.026 0.513 2.869 9.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.092 3.908 4 C -0.025 4.025 5 O -0.081 6.081 6 C -0.083 4.083 7 C 0.392 3.608 8 O -0.422 6.422 9 N -0.336 5.336 10 C 0.006 3.994 11 H 0.119 0.881 12 C -0.160 4.160 13 C -0.088 4.088 14 H 0.137 0.863 15 C -0.009 4.009 16 C -0.176 4.176 17 C 0.100 3.900 18 F -0.118 7.118 19 C -0.224 4.224 20 C 0.098 3.902 21 F -0.119 7.119 22 C -0.175 4.175 23 C -0.180 4.180 24 C -0.133 4.133 25 C -0.097 4.097 26 C -0.101 4.101 27 C -0.197 4.197 28 O -0.356 6.356 29 Si 0.684 3.316 30 C -0.106 4.106 31 C -0.184 4.184 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.256 0.744 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.178 0.822 39 H 0.169 0.831 40 H 0.177 0.823 41 H 0.091 0.909 42 H 0.125 0.875 43 H 0.189 0.811 44 H 0.133 0.867 45 H 0.236 0.764 46 H -0.234 1.234 47 H -0.189 1.189 48 H 0.182 0.818 49 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.079 1.096 2.939 8.666 hybrid contribution 0.190 -0.832 -1.502 1.728 sum -7.888 0.264 1.436 8.023 Atomic orbital electron populations 1.23483 0.75350 1.06019 1.03130 1.86145 1.24262 1.25769 1.88422 1.17969 0.86117 0.86828 0.99879 1.19179 0.88204 0.87087 1.08073 1.84008 1.12646 1.34965 1.76495 1.21916 0.84024 0.92676 1.09656 1.16621 0.84930 0.82757 0.76500 1.90901 1.31377 1.68236 1.51655 1.45510 1.10680 1.04711 1.72728 1.22032 0.85830 0.93334 0.98204 0.88145 1.23424 1.04819 0.92139 0.95647 1.21720 1.00713 0.89080 0.97292 0.86253 1.19412 0.91810 0.94933 0.94727 1.21278 0.95613 0.97169 1.03579 1.17410 0.76857 0.94698 1.01049 1.91534 1.29450 1.96799 1.94036 1.21183 0.92945 1.00916 1.07340 1.17448 0.88143 0.84456 1.00116 1.91531 1.75709 1.54479 1.90146 1.21354 1.02560 0.90879 1.02705 1.23611 1.02261 0.94932 0.97231 1.22858 0.95366 0.94499 1.00610 1.19575 0.92351 0.92806 1.05001 1.19547 0.93463 0.93885 1.03200 1.25371 1.07699 0.98643 0.87949 1.86609 1.38945 1.92792 1.17249 0.93906 0.75417 0.73511 0.88735 1.20878 0.92937 0.98824 0.97998 1.21367 1.01803 0.89619 1.05659 0.90484 0.90899 0.86621 0.74440 0.87016 0.88964 0.82229 0.83086 0.82258 0.90940 0.87464 0.81132 0.86673 0.76448 1.23364 1.18872 0.81833 0.80366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.36 10.50 -93.24 -0.98 -1.34 16 3 C 0.14 0.24 6.70 22.56 0.15 0.39 16 4 C 0.02 0.13 7.35 23.14 0.17 0.30 16 5 O -0.18 -1.14 10.28 -13.47 -0.14 -1.28 16 6 C -0.03 -0.21 7.07 24.00 0.17 -0.04 16 7 C 0.61 3.75 7.80 86.54 0.67 4.42 16 8 O -0.54 -6.80 16.42 -4.19 -0.07 -6.87 16 9 N -0.69 0.54 5.26 -443.72 -2.33 -1.80 16 10 C 0.11 -0.35 4.32 45.52 0.20 -0.15 16 11 H 0.10 0.00 7.46 -2.39 -0.02 -0.02 16 12 C -0.12 0.91 7.29 31.12 0.23 1.14 16 13 C -0.07 0.48 3.86 -11.01 -0.04 0.44 16 14 H 0.12 -1.08 8.09 -2.39 -0.02 -1.10 16 15 C -0.01 0.03 5.29 -19.88 -0.11 -0.07 16 16 C -0.16 0.35 8.60 22.32 0.19 0.54 16 17 C 0.12 0.21 7.30 22.37 0.16 0.37 16 18 F -0.14 -0.64 17.27 44.97 0.78 0.14 16 19 C -0.20 -0.40 10.01 22.35 0.22 -0.17 16 20 C 0.12 0.21 7.30 22.37 0.16 0.38 16 21 F -0.14 -0.64 17.27 44.97 0.78 0.14 16 22 C -0.16 0.33 9.69 22.32 0.22 0.55 16 23 C -0.14 0.66 7.25 31.12 0.23 0.89 16 24 C -0.11 -0.78 10.68 23.79 0.25 -0.52 16 25 C -0.10 -0.49 6.16 -20.24 -0.12 -0.62 16 26 C -0.10 -0.04 5.27 -19.87 -0.10 -0.15 16 27 C -0.09 0.04 2.70 71.24 0.19 0.23 16 28 O -0.55 -1.68 12.88 -148.98 -1.92 -3.60 16 29 Si 0.78 -3.33 30.24 68.60 2.07 -1.26 16 30 C -0.09 0.35 8.62 22.02 0.19 0.54 16 31 C -0.17 0.67 9.03 22.40 0.20 0.87 16 32 H 0.08 -0.86 7.66 -2.39 -0.02 -0.87 16 33 H 0.07 -0.77 7.66 -2.39 -0.02 -0.79 16 34 H 0.12 -1.19 8.14 -2.39 -0.02 -1.21 16 35 H 0.42 -1.86 8.42 -92.71 -0.78 -2.64 16 36 H 0.11 -0.94 7.73 -2.39 -0.02 -0.96 16 37 H 0.09 -0.79 8.14 -2.38 -0.02 -0.81 16 38 H 0.16 -0.91 6.64 -2.91 -0.02 -0.93 16 39 H 0.15 0.06 8.06 -2.91 -0.02 0.04 16 40 H 0.16 -0.94 8.05 -2.91 -0.02 -0.96 16 41 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.11 -0.63 6.29 -2.38 -0.01 -0.65 16 43 H 0.17 1.11 8.06 -2.92 -0.02 1.09 16 44 H 0.12 -0.04 7.96 -2.38 -0.02 -0.06 16 45 H 0.39 -1.29 8.70 -74.05 -0.64 -1.93 16 46 H -0.31 -1.31 7.11 99.48 0.71 -0.61 16 47 H -0.26 0.89 6.70 99.48 0.67 1.56 16 48 H 0.16 -1.48 4.81 -2.91 -0.01 -1.49 16 49 H 0.18 -1.94 6.26 -2.91 -0.02 -1.96 16 Total: 0.00 -22.21 422.29 2.18 -20.03 By element: Atomic # 1 Polarization: -14.16 SS G_CDS: -0.36 Total: -14.51 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 4.35 Total: 10.34 kcal Atomic # 7 Polarization: 0.54 SS G_CDS: -2.33 Total: -1.80 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -3.11 Total: -13.08 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 1.55 Total: 0.28 kcal Atomic # 14 Polarization: -3.33 SS G_CDS: 2.07 Total: -1.26 kcal Total: -22.21 2.18 -20.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_6672420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.531 kcal (2) G-P(sol) polarization free energy of solvation -22.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds