Wall clock time and date at job start Mon Mar 8 2021 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00415 * 2 1 4 4 C 1.38606 * 120.02740 * 180.02562 * 3 2 1 5 5 C 1.38655 * 119.88832 * 179.97438 * 4 3 2 6 6 O 1.35901 * 120.02634 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99924 * 359.97438 * 6 5 4 8 8 C 1.50705 * 109.46987 * 180.02562 * 7 6 5 9 9 O 1.21275 * 119.99947 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99715 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99597 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.85296 * 23.80222 * 11 10 8 13 13 C 1.53781 * 113.61334 * 154.99978 * 11 10 8 14 14 C 1.53786 * 87.17350 * 89.07333 * 13 11 10 15 15 H 1.09000 * 113.60973 * 270.92699 * 14 13 11 16 16 C 1.50690 * 113.61518 * 140.02616 * 14 13 11 17 17 C 1.38216 * 120.00286 * 119.72655 * 16 14 13 18 18 C 1.50703 * 119.99729 * 359.97438 * 17 16 14 19 19 C 1.38256 * 119.99821 * 179.74141 * 17 16 14 20 20 C 1.38212 * 120.00311 * 0.52773 * 19 17 16 21 21 C 1.38262 * 119.99637 * 359.74718 * 20 19 17 22 22 C 1.38211 * 120.00077 * 359.97438 * 21 20 19 23 23 C 1.53781 * 113.61146 * 252.49455 * 11 10 8 24 24 C 1.38746 * 119.94732 * 0.27248 * 5 4 3 25 25 C 1.50706 * 119.97507 * 179.70327 * 24 5 4 26 26 O 1.42891 * 109.47203 * 285.00228 * 25 24 5 27 27 Si 1.86299 * 109.47101 * 164.99977 * 25 24 5 28 28 C 1.38202 * 120.05463 * 359.45042 * 24 5 4 29 29 C 1.38163 * 120.10368 * 0.55289 * 28 24 5 30 30 H 1.09000 * 109.47320 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46571 * 299.99998 * 1 2 3 32 32 H 1.08994 * 109.46902 * 59.99564 * 1 2 3 33 33 H 1.08002 * 120.05962 * 0.02562 * 4 3 2 34 34 H 1.09000 * 109.46954 * 60.01071 * 7 6 5 35 35 H 1.08993 * 109.47307 * 300.00368 * 7 6 5 36 36 H 0.96995 * 120.00232 * 359.97438 * 10 8 7 37 37 H 1.09002 * 113.61445 * 203.66333 * 13 11 10 38 38 H 1.09002 * 113.61408 * 334.48063 * 13 11 10 39 39 H 1.09000 * 109.47004 * 90.00411 * 18 17 16 40 40 H 1.09002 * 109.46753 * 210.00095 * 18 17 16 41 41 H 1.08996 * 109.47036 * 330.00487 * 18 17 16 42 42 H 1.08002 * 119.99857 * 180.29437 * 19 17 16 43 43 H 1.08004 * 120.00242 * 179.76787 * 20 19 17 44 44 H 1.08000 * 119.99717 * 179.97438 * 21 20 19 45 45 H 1.07998 * 119.99671 * 180.02562 * 22 21 20 46 46 H 1.09005 * 113.61471 * 25.43638 * 23 11 10 47 47 H 1.08996 * 113.61178 * 156.24980 * 23 11 10 48 48 H 1.09005 * 109.46841 * 45.00325 * 25 24 5 49 49 H 0.96701 * 114.00117 * 299.99817 * 26 25 24 50 50 H 1.48500 * 109.99870 * 180.02562 * 27 25 24 51 51 H 1.48502 * 110.00283 * 301.32486 * 27 25 24 52 52 H 1.07994 * 119.94625 * 180.27454 * 28 24 5 53 53 H 1.07997 * 119.96678 * 179.70101 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4302 1.2839 -0.0005 5 6 4.0568 2.5208 -0.0011 6 8 5.4137 2.5958 -0.0021 7 6 6.1317 1.3602 -0.0021 8 6 7.6126 1.6398 -0.0027 9 8 8.0136 2.7843 -0.0026 10 7 8.4912 0.6178 -0.0032 11 6 9.9308 0.8896 -0.0033 12 1 10.1764 1.8710 0.4025 13 6 10.7731 -0.2512 0.5916 14 6 10.8312 -0.8452 -0.8257 15 1 10.0057 -1.5208 -1.0501 16 6 12.1761 -1.4232 -1.1834 17 6 12.2887 -2.7619 -1.5083 18 6 11.0666 -3.6436 -1.5042 19 6 13.5218 -3.2909 -1.8416 20 6 14.6437 -2.4836 -1.8395 21 6 14.5318 -1.1457 -1.5090 22 6 13.2982 -0.6155 -1.1813 23 6 10.6146 0.5880 -1.3473 24 6 3.2973 3.6820 0.0046 25 6 3.9777 5.0267 0.0108 26 8 4.5043 5.2881 1.3132 27 14 2.7441 6.3489 -0.4372 28 6 1.9173 3.6065 -0.0006 29 6 1.2907 2.3751 0.0000 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 4.0197 0.3790 -0.0014 34 1 5.8694 0.7876 -0.8917 35 1 5.8706 0.7883 0.8883 36 1 8.1705 -0.2976 -0.0029 37 1 11.7429 0.0730 0.9692 38 1 10.2278 -0.8715 1.3030 39 1 10.6057 -3.6304 -2.4918 40 1 11.3556 -4.6639 -1.2517 41 1 10.3547 -3.2744 -0.7660 42 1 13.6091 -4.3359 -2.1001 43 1 15.6075 -2.8977 -2.0963 44 1 15.4085 -0.5149 -1.5069 45 1 13.2109 0.4296 -0.9236 46 1 9.9408 0.6445 -2.2023 47 1 11.5402 1.1429 -1.5004 48 1 4.7899 5.0262 -0.7162 49 1 3.8359 5.3033 2.0119 50 1 3.4028 7.6798 -0.4352 51 1 2.1654 6.0710 -1.7763 52 1 1.3279 4.5114 -0.0006 53 1 0.2122 2.3187 0.0008 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_4974312.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:20:49 Heat of formation + Delta-G solvation = -54.110977 kcal Electronic energy + Delta-G solvation = -34511.769363 eV Core-core repulsion = 29895.886320 eV Total energy + Delta-G solvation = -4615.883043 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.93577 -41.56182 -40.61394 -39.86650 -38.84785 -38.19886 -36.91561 -34.77489 -33.73777 -32.29478 -31.87350 -31.28437 -29.45057 -28.34580 -27.82226 -26.74536 -26.11556 -26.04782 -23.92089 -23.02520 -22.49368 -21.91550 -21.84190 -20.18638 -19.90740 -18.64309 -18.15264 -17.87147 -17.58882 -17.51261 -17.17733 -16.87482 -16.67541 -16.52782 -16.46989 -16.00032 -15.89783 -15.62380 -15.45527 -15.13975 -14.99043 -14.82676 -14.70771 -14.46440 -14.40710 -13.98429 -13.88108 -13.69397 -13.46041 -13.43142 -13.32340 -13.16199 -13.15194 -12.84674 -12.74947 -12.48321 -12.26823 -12.08512 -12.01324 -11.86748 -11.75282 -11.62633 -11.55165 -11.21133 -11.08245 -10.35607 -10.22637 -9.70062 -9.69183 -9.43464 -9.10081 -5.03956 0.20873 0.30230 0.41291 0.46726 1.31543 1.36166 1.38916 1.64354 1.98505 2.24923 2.53529 2.57937 2.77929 3.42401 3.46526 3.60547 3.64462 3.69842 3.73722 3.83352 3.89434 3.92222 3.99314 4.02553 4.05083 4.08537 4.16673 4.18165 4.22960 4.34804 4.39638 4.42286 4.44295 4.46909 4.56515 4.59509 4.61420 4.72175 4.78546 4.79849 4.80512 4.83046 4.91934 4.97736 4.97916 5.02253 5.10220 5.18096 5.23697 5.27973 5.31642 5.44569 5.48921 5.61802 5.62603 5.76208 6.11636 6.12918 6.35011 6.41000 6.86527 7.06248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.164 3.836 4 C -0.253 4.253 5 C 0.173 3.827 6 O -0.305 6.305 7 C 0.036 3.964 8 C 0.516 3.484 9 O -0.568 6.568 10 N -0.691 5.691 11 C 0.117 3.883 12 H 0.082 0.918 13 C -0.122 4.122 14 C -0.066 4.066 15 H 0.117 0.883 16 C -0.081 4.081 17 C -0.094 4.094 18 C -0.118 4.118 19 C -0.134 4.134 20 C -0.133 4.133 21 C -0.138 4.138 22 C -0.125 4.125 23 C -0.143 4.143 24 C -0.203 4.203 25 C -0.068 4.068 26 O -0.557 6.557 27 Si 0.795 3.205 28 C -0.032 4.032 29 C -0.237 4.237 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.152 0.848 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.421 0.579 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.391 0.609 50 H -0.304 1.304 51 H -0.280 1.280 52 H 0.166 0.834 53 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.781 -7.152 1.685 9.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.117 3.883 4 C -0.273 4.273 5 C 0.127 3.873 6 O -0.218 6.218 7 C -0.042 4.042 8 C 0.303 3.697 9 O -0.446 6.446 10 N -0.345 5.345 11 C 0.011 3.989 12 H 0.100 0.900 13 C -0.160 4.160 14 C -0.084 4.084 15 H 0.135 0.865 16 C -0.081 4.081 17 C -0.094 4.094 18 C -0.174 4.174 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.156 4.156 22 C -0.142 4.142 23 C -0.182 4.182 24 C -0.204 4.204 25 C -0.177 4.177 26 O -0.365 6.365 27 Si 0.699 3.301 28 C -0.049 4.049 29 C -0.256 4.256 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.170 0.830 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.259 0.741 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.086 0.914 47 H 0.111 0.889 48 H 0.098 0.902 49 H 0.240 0.760 50 H -0.233 1.233 51 H -0.207 1.207 52 H 0.183 0.817 53 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.952 -5.740 0.807 8.308 hybrid contribution 0.862 -0.775 -0.450 1.244 sum -5.090 -6.516 0.357 8.276 Atomic orbital electron populations 1.23412 0.75942 1.05706 1.02778 1.86054 1.23815 1.26584 1.87937 1.18873 0.91599 0.85080 0.92720 1.20544 0.93532 0.97320 1.15859 1.18626 0.81656 0.93338 0.93709 1.86222 1.15679 1.31664 1.88197 1.22727 0.88287 0.86518 1.06699 1.20483 0.88527 0.85140 0.75594 1.90778 1.80702 1.23297 1.49776 1.45318 1.05124 1.09502 1.74560 1.21834 0.79389 0.99908 0.97737 0.89972 1.23350 1.00531 0.95908 0.96242 1.21688 0.94755 0.95573 0.96404 0.86497 1.19703 0.95192 0.93178 1.00044 1.20101 0.96079 0.94287 0.98918 1.20900 0.94820 0.98653 1.03059 1.21316 0.92519 1.00614 1.00743 1.21408 0.99315 0.94278 1.00046 1.21381 0.98142 0.95886 1.00183 1.21206 0.92469 1.00270 1.00290 1.23593 1.01152 0.96260 0.97175 1.19747 0.93846 0.94003 1.12835 1.25132 1.04352 0.99775 0.88420 1.86541 1.39287 1.93835 1.16840 0.94134 0.80325 0.73038 0.82558 1.20864 0.91496 0.98631 0.93886 1.21452 1.01801 0.91161 1.11177 0.86626 0.91031 0.91348 0.82994 0.86025 0.85890 0.74116 0.88462 0.88969 0.90704 0.91032 0.90020 0.85045 0.85045 0.85140 0.85288 0.91402 0.88909 0.90244 0.76005 1.23280 1.20667 0.81667 0.82115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.10 10.49 -92.41 -0.97 -1.07 16 3 C 0.16 0.21 6.68 22.49 0.15 0.36 16 4 C -0.25 -0.58 8.97 22.46 0.20 -0.37 16 5 C 0.17 1.05 6.66 22.49 0.15 1.20 16 6 O -0.31 -2.84 8.99 -73.40 -0.66 -3.50 16 7 C 0.04 0.01 5.22 71.24 0.37 0.38 16 8 C 0.52 2.83 7.91 87.66 0.69 3.52 16 9 O -0.57 -9.95 16.10 16.02 0.26 -9.69 16 10 N -0.69 1.49 5.26 -440.03 -2.32 -0.83 16 11 C 0.12 0.00 4.32 45.52 0.20 0.20 16 12 H 0.08 0.46 7.46 -2.39 -0.02 0.44 16 13 C -0.12 0.48 7.28 31.12 0.23 0.71 16 14 C -0.07 0.22 3.41 -10.92 -0.04 0.18 16 15 H 0.12 -0.78 6.09 -2.39 -0.01 -0.79 16 16 C -0.08 -0.06 5.29 -19.87 -0.11 -0.17 16 17 C -0.09 -0.09 5.88 -19.86 -0.12 -0.21 16 18 C -0.12 0.47 9.32 71.24 0.66 1.13 16 19 C -0.13 -0.26 9.70 22.27 0.22 -0.04 16 20 C -0.13 -0.31 10.05 22.27 0.22 -0.08 16 21 C -0.14 -0.34 10.05 22.27 0.22 -0.11 16 22 C -0.12 -0.24 8.62 22.27 0.19 -0.05 16 23 C -0.14 0.07 7.26 31.21 0.23 0.30 16 24 C -0.20 -0.90 5.28 -19.75 -0.10 -1.01 16 25 C -0.07 -0.45 2.37 71.24 0.17 -0.28 16 26 O -0.56 -4.50 12.88 -148.98 -1.92 -6.42 16 27 Si 0.79 0.72 29.91 68.60 2.05 2.77 16 28 C -0.03 0.04 8.65 22.24 0.19 0.23 16 29 C -0.24 0.46 9.04 22.38 0.20 0.66 16 30 H 0.12 -1.14 8.14 -2.39 -0.02 -1.16 16 31 H 0.07 -0.66 7.66 -2.38 -0.02 -0.68 16 32 H 0.07 -0.60 7.66 -2.39 -0.02 -0.62 16 33 H 0.15 -0.32 6.30 -2.91 -0.02 -0.34 16 34 H 0.12 -0.68 7.66 -2.39 -0.02 -0.70 16 35 H 0.12 -0.68 7.66 -2.39 -0.02 -0.70 16 36 H 0.42 -4.13 8.70 -92.71 -0.81 -4.93 16 37 H 0.10 -0.29 7.72 -2.39 -0.02 -0.31 16 38 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 40 H 0.07 -0.33 8.09 -2.39 -0.02 -0.35 16 41 H 0.08 -0.55 6.34 -2.39 -0.02 -0.56 16 42 H 0.13 -0.16 8.06 -2.91 -0.02 -0.18 16 43 H 0.13 -0.11 8.06 -2.91 -0.02 -0.14 16 44 H 0.13 -0.06 8.06 -2.91 -0.02 -0.09 16 45 H 0.13 -0.05 6.66 -2.91 -0.02 -0.07 16 46 H 0.07 0.07 8.14 -2.38 -0.02 0.05 16 47 H 0.09 0.02 6.33 -2.39 -0.02 0.00 16 48 H 0.08 0.99 7.82 -2.38 -0.02 0.97 16 49 H 0.39 -0.79 8.70 -74.06 -0.64 -1.43 16 50 H -0.30 -2.77 7.11 99.48 0.71 -2.06 16 51 H -0.28 -1.28 7.11 99.48 0.71 -0.57 16 52 H 0.17 -1.30 5.11 -2.91 -0.01 -1.31 16 53 H 0.16 -1.23 6.29 -2.91 -0.02 -1.24 16 Total: 0.00 -29.98 428.64 1.05 -28.94 By element: Atomic # 1 Polarization: -17.30 SS G_CDS: -0.45 Total: -17.75 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.05 Total: 7.55 kcal Atomic # 7 Polarization: 1.49 SS G_CDS: -2.32 Total: -0.83 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -3.29 Total: -20.69 kcal Atomic # 14 Polarization: 0.72 SS G_CDS: 2.05 Total: 2.77 kcal Total: -29.98 1.05 -28.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_4974312.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.172 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds