Wall clock time and date at job start Mon Mar 8 2021 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33813 * 122.44689 * 2 1 4 4 C 1.50695 * 124.52738 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.47427 * 113.27049 * 4 3 2 6 6 Si 1.86299 * 109.47539 * 233.27380 * 4 3 2 7 7 S 1.70620 * 110.95181 * 179.75012 * 3 2 1 8 8 C 1.75830 * 91.56308 * 0.22785 * 7 3 2 9 9 C 1.46583 * 125.45710 * 179.97438 * 8 7 3 10 10 O 1.21700 * 119.99961 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00219 * 0.02562 * 9 8 7 12 12 C 1.46493 * 120.00034 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.84990 * 25.33277 * 12 11 9 14 14 C 1.53783 * 113.61498 * 156.52871 * 12 11 9 15 15 C 1.53776 * 87.08251 * 89.11646 * 14 12 11 16 16 H 1.08998 * 113.61270 * 270.88896 * 15 14 12 17 17 C 1.50696 * 113.61763 * 140.06483 * 15 14 12 18 18 C 1.38210 * 119.99910 * 119.99822 * 17 15 14 19 19 C 1.50701 * 120.00352 * 359.97438 * 18 17 15 20 20 C 1.38261 * 120.00072 * 180.02562 * 18 17 15 21 21 C 1.38216 * 119.99549 * 359.95871 * 20 18 17 22 22 C 1.38250 * 120.00506 * 359.97438 * 21 20 18 23 23 C 1.38217 * 119.99622 * 359.80791 * 22 21 20 24 24 C 1.53780 * 113.61597 * 254.13689 * 12 11 9 25 25 C 1.36649 * 109.08521 * 0.02562 * 8 7 3 26 26 H 1.09008 * 109.46943 * 84.84663 * 1 2 3 27 27 H 1.08995 * 109.47231 * 204.84665 * 1 2 3 28 28 H 1.08996 * 109.47056 * 324.85207 * 1 2 3 29 29 H 1.09004 * 109.47028 * 353.27189 * 4 3 2 30 30 H 0.96697 * 113.99512 * 60.00495 * 5 4 3 31 31 H 1.48502 * 109.99972 * 58.67512 * 6 4 3 32 32 H 1.48495 * 110.00181 * 179.97438 * 6 4 3 33 33 H 0.97002 * 119.99352 * 359.97438 * 11 9 8 34 34 H 1.09003 * 113.61526 * 203.66365 * 14 12 11 35 35 H 1.08997 * 113.61178 * 334.48329 * 14 12 11 36 36 H 1.08992 * 109.47273 * 89.99625 * 19 18 17 37 37 H 1.09000 * 109.46990 * 210.00090 * 19 18 17 38 38 H 1.08999 * 109.46502 * 329.99469 * 19 18 17 39 39 H 1.07993 * 120.00118 * 179.97438 * 20 18 17 40 40 H 1.08008 * 119.99626 * 180.02562 * 21 20 18 41 41 H 1.07996 * 120.00049 * 180.02562 * 22 21 20 42 42 H 1.08003 * 119.99644 * 180.23085 * 23 22 21 43 43 H 1.09002 * 113.61557 * 25.43016 * 24 12 11 44 44 H 1.08996 * 113.61984 * 156.33828 * 24 12 11 45 45 H 1.07999 * 123.35515 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6356 2.5161 0.0006 5 8 1.9396 3.1625 1.2383 6 14 2.3587 3.4989 -1.4072 7 16 3.8970 0.7892 0.0069 8 6 3.5937 -0.9427 0.0029 9 6 4.6232 -1.9862 0.0053 10 8 4.3002 -3.1596 0.0017 11 7 5.9273 -1.6463 0.0117 12 6 6.9561 -2.6892 0.0136 13 1 6.6089 -3.6271 -0.4199 14 6 8.3112 -2.2188 -0.5408 15 6 8.6626 -1.7950 0.8950 16 1 8.3636 -0.7746 1.1346 17 6 10.0887 -2.0927 1.2805 18 6 10.9328 -1.0640 1.6540 19 6 10.4273 0.3555 1.6753 20 6 12.2414 -1.3371 2.0071 21 6 12.7051 -2.6390 1.9874 22 6 11.8604 -3.6682 1.6151 23 6 10.5510 -3.3957 1.2664 24 6 7.6572 -2.8605 1.3715 25 6 2.2446 -1.1601 -0.0041 26 1 -0.3633 0.0923 -1.0236 27 1 -0.3633 -0.9325 0.4318 28 1 -0.3633 0.8403 0.5916 29 1 0.5541 2.4513 -0.1195 30 1 2.8864 3.2549 1.4115 31 1 2.0769 2.8205 -2.6978 32 1 1.7850 4.8685 -1.4180 33 1 6.1847 -0.7110 0.0142 34 1 8.9326 -3.0295 -0.9212 35 1 8.2320 -1.3838 -1.2369 36 1 10.0157 0.5799 2.6593 37 1 11.2502 1.0375 1.4614 38 1 9.6502 0.4757 0.9204 39 1 12.9010 -0.5333 2.2986 40 1 13.7272 -2.8524 2.2636 41 1 12.2227 -4.6855 1.6001 42 1 9.8901 -4.2001 0.9792 43 1 7.0505 -2.5423 2.2193 44 1 8.1001 -3.8463 1.5130 45 1 1.8019 -2.1452 -0.0081 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_6739946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:21:26 Heat of formation + Delta-G solvation = 14.462873 kcal Electronic energy + Delta-G solvation = -26707.387083 eV Core-core repulsion = 22976.531875 eV Total energy + Delta-G solvation = -3730.855208 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.123 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.69709 -40.61312 -39.75187 -38.72307 -37.55673 -34.75845 -33.69407 -32.53267 -31.49349 -29.87619 -27.89929 -27.15136 -26.70919 -25.78279 -24.41131 -23.00840 -21.99998 -21.82940 -20.37931 -19.93166 -19.50131 -17.92883 -17.59669 -17.42894 -16.92667 -16.59118 -16.33443 -16.00954 -15.81095 -15.73437 -15.33819 -15.04244 -14.86570 -14.74929 -14.51591 -14.32421 -14.21805 -13.93608 -13.59894 -13.48750 -13.40724 -13.19666 -13.09915 -13.04085 -12.79699 -12.70343 -12.45147 -12.26855 -12.04234 -11.96115 -11.72365 -11.52645 -11.29757 -11.16384 -10.78359 -10.26642 -9.71727 -9.64353 -9.42760 -9.38819 -5.17958 -0.71166 0.29838 0.45837 0.51373 0.67842 1.04783 1.24698 1.59667 1.88447 1.91340 2.02331 2.82528 3.35364 3.45235 3.54508 3.62807 3.70481 3.75456 3.94010 4.04224 4.05129 4.10020 4.16364 4.22676 4.27134 4.38870 4.43046 4.47289 4.60412 4.61859 4.68646 4.75700 4.77127 4.84575 4.85320 4.89057 4.92910 4.96382 5.02509 5.03161 5.12983 5.22616 5.23260 5.33536 5.37325 5.48076 5.66123 5.67042 5.80910 6.17494 6.31580 6.59706 6.99505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.114 4.114 3 C -0.241 4.241 4 C -0.039 4.039 5 O -0.546 6.546 6 Si 0.762 3.238 7 S 0.283 5.717 8 C -0.286 4.286 9 C 0.593 3.407 10 O -0.570 6.570 11 N -0.694 5.694 12 C 0.116 3.884 13 H 0.089 0.911 14 C -0.123 4.123 15 C -0.068 4.068 16 H 0.116 0.884 17 C -0.080 4.080 18 C -0.093 4.093 19 C -0.119 4.119 20 C -0.134 4.134 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.124 4.124 24 C -0.143 4.143 25 C -0.059 4.059 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.394 0.606 31 H -0.283 1.283 32 H -0.276 1.276 33 H 0.412 0.588 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.059 5.232 -0.579 6.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.127 4.127 3 C -0.361 4.361 4 C -0.150 4.150 5 O -0.354 6.354 6 Si 0.664 3.336 7 S 0.553 5.447 8 C -0.406 4.406 9 C 0.380 3.620 10 O -0.450 6.450 11 N -0.345 5.345 12 C 0.010 3.990 13 H 0.107 0.893 14 C -0.161 4.161 15 C -0.086 4.086 16 H 0.134 0.866 17 C -0.080 4.080 18 C -0.093 4.093 19 C -0.175 4.175 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.142 4.142 24 C -0.182 4.182 25 C -0.093 4.093 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.142 0.858 30 H 0.244 0.756 31 H -0.210 1.210 32 H -0.202 1.202 33 H 0.249 0.751 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.400 5.784 -1.266 7.377 hybrid contribution -1.737 -1.385 0.310 2.243 sum 2.663 4.399 -0.955 5.231 Atomic orbital electron populations 1.20645 0.88639 1.03755 1.03088 1.18797 0.98818 0.90913 1.04128 1.24729 1.00245 1.00838 1.10264 1.24785 1.03936 0.89567 0.96749 1.86554 1.31521 1.79308 1.37978 0.94249 0.88640 0.76652 0.74047 1.82169 1.00796 0.95115 1.66611 1.24528 0.97586 0.98716 1.19764 1.17143 0.82417 0.87053 0.75354 1.90834 1.82297 1.20102 1.51814 1.45397 1.04143 1.10580 1.74416 1.21901 0.87399 0.91702 0.97966 0.89325 1.23365 0.93776 1.02804 0.96170 1.21704 0.90134 1.00387 0.96375 0.86612 1.19694 0.95533 0.92919 0.99903 1.20112 0.93771 0.96757 0.98683 1.20910 1.02246 0.91168 1.03170 1.21314 0.95896 0.97224 1.00779 1.21404 1.00494 0.93208 1.00055 1.21372 0.94236 0.99894 1.00131 1.21211 0.95978 0.96715 1.00261 1.23603 0.97211 1.00278 0.97069 1.20739 0.91480 1.00117 0.96923 0.90320 0.90671 0.90714 0.85788 0.75592 1.20965 1.20220 0.75061 0.88114 0.88963 0.90631 0.91010 0.89899 0.85089 0.85170 0.85190 0.85146 0.91444 0.88578 0.83679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.10 9.48 71.24 0.68 0.77 16 2 C -0.11 -0.18 5.78 -21.05 -0.12 -0.30 16 3 C -0.24 0.35 4.82 24.68 0.12 0.47 16 4 C -0.04 0.11 2.77 71.23 0.20 0.31 16 5 O -0.55 1.40 12.88 -148.98 -1.92 -0.52 16 6 Si 0.76 -3.22 32.14 68.60 2.20 -1.01 16 7 S 0.28 -1.54 20.84 -56.49 -1.18 -2.72 16 8 C -0.29 -0.72 6.45 24.08 0.16 -0.56 16 9 C 0.59 3.38 7.78 86.42 0.67 4.06 16 10 O -0.57 -8.25 16.46 -4.35 -0.07 -8.32 16 11 N -0.69 0.89 5.26 -444.10 -2.34 -1.44 16 12 C 0.12 -0.12 4.29 45.52 0.20 0.08 16 13 H 0.09 0.29 7.50 -2.39 -0.02 0.28 16 14 C -0.12 0.62 7.29 31.12 0.23 0.85 16 15 C -0.07 0.29 3.42 -10.92 -0.04 0.25 16 16 H 0.12 -0.84 6.08 -2.39 -0.01 -0.86 16 17 C -0.08 0.03 5.29 -19.87 -0.11 -0.08 16 18 C -0.09 0.01 5.88 -19.87 -0.12 -0.11 16 19 C -0.12 0.61 9.33 71.24 0.66 1.28 16 20 C -0.13 -0.14 9.70 22.27 0.22 0.08 16 21 C -0.13 -0.20 10.05 22.27 0.22 0.02 16 22 C -0.14 -0.20 10.05 22.27 0.22 0.02 16 23 C -0.12 -0.09 8.63 22.27 0.19 0.10 16 24 C -0.14 0.23 7.27 31.21 0.23 0.45 16 25 C -0.06 -0.24 9.78 21.72 0.21 -0.03 16 26 H 0.08 -0.19 8.14 -2.38 -0.02 -0.20 16 27 H 0.07 -0.10 8.10 -2.39 -0.02 -0.12 16 28 H 0.07 -0.12 7.00 -2.39 -0.02 -0.13 16 29 H 0.12 -0.27 6.25 -2.38 -0.01 -0.29 16 30 H 0.39 -4.31 8.70 -74.06 -0.64 -4.96 16 31 H -0.28 -0.52 7.11 99.48 0.71 0.18 16 32 H -0.28 -0.52 7.11 99.48 0.71 0.19 16 33 H 0.41 -3.03 7.82 -92.71 -0.72 -3.75 16 34 H 0.10 -0.46 7.73 -2.39 -0.02 -0.48 16 35 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 36 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.07 -0.42 8.09 -2.39 -0.02 -0.44 16 38 H 0.08 -0.67 6.34 -2.39 -0.02 -0.68 16 39 H 0.13 -0.26 8.06 -2.91 -0.02 -0.29 16 40 H 0.13 -0.19 8.06 -2.91 -0.02 -0.22 16 41 H 0.13 -0.18 8.06 -2.91 -0.02 -0.21 16 42 H 0.13 -0.24 6.65 -2.91 -0.02 -0.26 16 43 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.10 -0.14 6.31 -2.39 -0.02 -0.16 16 45 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 Total: 0.00 -19.42 381.21 0.22 -19.19 By element: Atomic # 1 Polarization: -12.53 SS G_CDS: -0.30 Total: -12.83 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 3.82 Total: 7.65 kcal Atomic # 7 Polarization: 0.89 SS G_CDS: -2.34 Total: -1.44 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -1.99 Total: -8.84 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.20 Total: -1.01 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -1.18 Total: -2.72 kcal Total: -19.42 0.22 -19.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_6739946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.655 kcal (2) G-P(sol) polarization free energy of solvation -19.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds