Wall clock time and date at job start Mon Mar 8 2021 04:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86309 * 109.47107 * 2 1 4 4 C 1.50702 * 109.47172 * 120.00078 * 2 1 3 5 5 C 1.34461 * 126.48030 * 254.96251 * 4 2 1 6 6 N 1.36564 * 109.97951 * 180.02562 * 5 4 2 7 7 C 1.37826 * 109.86349 * 359.97438 * 6 5 4 8 8 C 1.38648 * 133.37692 * 180.33524 * 7 6 5 9 9 C 1.39317 * 119.66500 * 180.18089 * 8 7 6 10 10 C 1.47577 * 119.83557 * 179.72176 * 9 8 7 11 11 O 1.21592 * 119.99754 * 359.73192 * 10 9 8 12 12 N 1.34774 * 120.00325 * 179.72646 * 10 9 8 13 13 C 1.46497 * 120.00179 * 180.02562 * 12 10 9 14 14 H 1.09000 * 112.84943 * 336.19296 * 13 12 10 15 15 C 1.53954 * 113.54180 * 107.50414 * 13 12 10 16 16 C 1.53784 * 87.01819 * 89.18978 * 15 13 12 17 17 H 1.08998 * 113.61114 * 270.77171 * 16 15 13 18 18 C 1.50698 * 113.61424 * 139.95753 * 16 15 13 19 19 C 1.38218 * 119.98254 * 140.86281 * 18 16 15 20 20 C 1.38255 * 120.03591 * 179.97438 * 19 18 16 21 21 C 1.38297 * 120.00185 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 120.01833 * 180.02562 * 21 20 19 23 23 C 1.38488 * 119.96128 * 359.97438 * 21 20 19 24 24 Cl 1.73604 * 120.02016 * 179.97438 * 23 21 20 25 25 C 1.38253 * 119.97999 * 320.83668 * 18 16 15 26 26 C 1.53781 * 87.17467 * 25.36338 * 16 15 13 27 27 C 1.40205 * 120.33309 * 359.45204 * 9 8 7 28 28 C 1.36231 * 120.37989 * 0.26792 * 27 9 8 29 29 C 1.39877 * 119.96035 * 0.02562 * 28 27 9 30 30 H 0.96704 * 113.99663 * 59.99873 * 1 2 3 31 31 H 1.09002 * 109.47279 * 240.00314 * 2 1 3 32 32 H 1.48491 * 109.99949 * 298.68246 * 3 2 1 33 33 H 1.48499 * 109.99724 * 60.00056 * 3 2 1 34 34 H 1.07998 * 125.00977 * 0.02936 * 5 4 2 35 35 H 0.97004 * 125.06459 * 180.02562 * 6 5 4 36 36 H 1.08001 * 120.16995 * 359.90269 * 8 7 6 37 37 H 0.97004 * 119.99824 * 0.02562 * 12 10 9 38 38 H 1.09000 * 113.66299 * 334.66055 * 15 13 12 39 39 H 1.09000 * 113.61640 * 203.71009 * 15 13 12 40 40 H 1.07998 * 119.98120 * 0.24788 * 19 18 16 41 41 H 1.08000 * 119.99309 * 179.97438 * 20 19 18 42 42 H 1.08003 * 119.99440 * 0.04162 * 25 18 16 43 43 H 1.08995 * 113.61302 * 89.15718 * 26 16 15 44 44 H 1.08993 * 113.61313 * 219.97737 * 26 16 15 45 45 H 1.08006 * 119.80776 * 180.30079 * 27 9 8 46 46 H 1.08002 * 120.01653 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.4623 -0.1363 2.3243 6 7 2.8044 -1.0948 3.2349 7 6 2.4946 -2.3431 2.7396 8 6 2.6255 -3.6275 3.2452 9 6 2.2117 -4.7154 2.4795 10 6 2.3550 -6.0845 3.0114 11 8 2.8376 -6.2612 4.1134 12 7 1.9508 -7.1390 2.2758 13 6 2.0925 -8.4980 2.8041 14 1 2.8721 -8.5786 3.5616 15 6 0.7557 -9.1386 3.2200 16 6 0.6462 -9.6555 1.7758 17 1 0.1453 -8.9617 1.1006 18 6 0.1086 -11.0598 1.6764 19 6 -0.7686 -11.3933 0.6616 20 6 -1.2622 -12.6815 0.5691 21 6 -0.8778 -13.6372 1.4917 22 17 -1.4967 -15.2550 1.3755 23 6 0.0020 -13.3033 2.5078 24 17 0.4850 -14.5017 3.6673 25 6 0.4934 -12.0139 2.5999 26 6 2.1807 -9.5774 1.7122 27 6 1.6548 -4.5157 1.2084 28 6 1.5173 -3.2567 0.7065 29 6 1.9336 -2.1547 1.4607 30 1 -0.3933 0.4417 -0.7651 31 1 1.7923 -0.5138 -0.8900 32 1 1.5879 2.4586 -1.2241 33 1 1.5615 2.4679 1.2085 34 1 2.5981 0.9262 2.4624 35 1 3.2050 -0.9226 4.1014 36 1 3.0502 -3.7842 4.2258 37 1 1.5660 -6.9981 1.3966 38 1 -0.0138 -8.4130 3.4836 39 1 0.8630 -9.9312 3.9605 40 1 -1.0652 -10.6484 -0.0619 41 1 -1.9479 -12.9412 -0.2239 42 1 1.1787 -11.7524 3.3927 43 1 2.6783 -10.4901 2.0397 44 1 2.5599 -9.2069 0.7599 45 1 1.3324 -5.3649 0.6241 46 1 1.0878 -3.1097 -0.2735 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9750034_12335838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:34:46 Heat of formation + Delta-G solvation = 40.237036 kcal Electronic energy + Delta-G solvation = -32605.999816 eV Core-core repulsion = 27901.169856 eV Total energy + Delta-G solvation = -4704.829961 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.069 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.44572 -41.64927 -40.57873 -39.15320 -37.87998 -37.56862 -37.53359 -37.40569 -34.61899 -33.34135 -31.94994 -31.82935 -30.76068 -30.39727 -26.70151 -26.62777 -26.25990 -24.76414 -23.95805 -23.61904 -22.70061 -21.61934 -20.59377 -20.22351 -19.31091 -18.58002 -18.42315 -18.13403 -17.34648 -17.19523 -16.97698 -16.60685 -16.15439 -15.92695 -15.86807 -15.55906 -15.34601 -15.17491 -15.03522 -14.99415 -14.81601 -14.74857 -14.54379 -14.35611 -13.84363 -13.75778 -13.56782 -13.44840 -13.14708 -12.94655 -12.90138 -12.65195 -12.58449 -12.39546 -12.27437 -12.16890 -12.03849 -11.85539 -11.81533 -11.57150 -11.24900 -11.11184 -10.75580 -10.31802 -10.14429 -9.97198 -9.59721 -9.34397 -8.78122 -4.84226 -0.30604 -0.11291 0.06196 0.40215 0.80329 1.20222 1.36567 1.40598 1.66401 1.88109 1.91304 2.02439 2.24835 2.36566 2.88338 3.42267 3.56737 3.57729 3.61002 3.63928 3.70529 3.74296 3.84902 3.93100 4.06279 4.06806 4.11895 4.13044 4.26745 4.28159 4.31112 4.39680 4.52751 4.59951 4.63269 4.73377 4.78253 4.79610 4.87366 4.88619 4.99021 4.99843 5.03276 5.05585 5.16707 5.24287 5.39854 5.43681 5.52093 5.58800 5.63248 5.64018 6.00089 6.48972 6.52889 6.71991 7.16599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.049 4.049 3 Si 0.766 3.234 4 C -0.190 4.190 5 C 0.087 3.913 6 N -0.578 5.578 7 C 0.066 3.934 8 C -0.068 4.068 9 C -0.136 4.136 10 C 0.565 3.435 11 O -0.582 6.582 12 N -0.692 5.692 13 C 0.114 3.886 14 H 0.086 0.914 15 C -0.145 4.145 16 C -0.063 4.063 17 H 0.127 0.873 18 C -0.051 4.051 19 C -0.093 4.093 20 C -0.100 4.100 21 C -0.053 4.053 22 Cl -0.063 7.063 23 C -0.044 4.044 24 Cl -0.063 7.063 25 C -0.102 4.102 26 C -0.125 4.125 27 C -0.105 4.105 28 C -0.082 4.082 29 C -0.081 4.081 30 H 0.391 0.609 31 H 0.086 0.914 32 H -0.290 1.290 33 H -0.288 1.288 34 H 0.202 0.798 35 H 0.434 0.566 36 H 0.128 0.872 37 H 0.416 0.584 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.168 0.832 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.158 0.842 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 5.956 -6.760 9.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.157 4.157 3 Si 0.670 3.330 4 C -0.197 4.197 5 C -0.043 4.043 6 N -0.181 5.181 7 C -0.041 4.041 8 C -0.089 4.089 9 C -0.140 4.140 10 C 0.354 3.646 11 O -0.463 6.463 12 N -0.344 5.344 13 C 0.008 3.992 14 H 0.104 0.896 15 C -0.184 4.184 16 C -0.081 4.081 17 H 0.145 0.855 18 C -0.052 4.052 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.080 4.080 22 Cl -0.035 7.035 23 C -0.072 4.072 24 Cl -0.034 7.034 25 C -0.120 4.120 26 C -0.162 4.162 27 C -0.124 4.124 28 C -0.100 4.100 29 C -0.086 4.086 30 H 0.241 0.759 31 H 0.104 0.896 32 H -0.217 1.217 33 H -0.215 1.215 34 H 0.218 0.782 35 H 0.274 0.726 36 H 0.145 0.855 37 H 0.255 0.745 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.186 0.814 41 H 0.175 0.825 42 H 0.167 0.833 43 H 0.119 0.881 44 H 0.114 0.886 45 H 0.175 0.825 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.790 6.098 -5.221 8.225 hybrid contribution -1.228 -0.571 0.102 1.358 sum 0.562 5.526 -5.119 7.554 Atomic orbital electron populations 1.86593 1.19227 1.80572 1.50745 1.24282 0.83318 1.11107 0.97028 0.94241 0.90098 0.71617 0.76997 1.19801 1.10578 0.91203 0.98093 1.22192 0.98392 0.95409 0.88276 1.41771 1.54312 1.03382 1.18659 1.18148 1.03965 0.86782 0.95157 1.20132 0.99976 0.88759 1.00050 1.19460 1.06154 0.91616 0.96768 1.18347 0.76714 0.85385 0.84146 1.90774 1.46660 1.86733 1.22128 1.45415 1.63114 1.04728 1.21156 1.21910 0.98490 0.80945 0.97856 0.89627 1.23612 0.97526 1.00531 0.96730 1.21685 0.96375 0.91855 0.98210 0.85495 1.19915 0.95913 0.95490 0.93853 1.21502 0.95441 0.95924 0.98184 1.21348 1.00227 0.92228 0.98028 1.21041 1.00229 0.88213 0.98551 1.98401 1.86133 1.21168 1.97753 1.20942 1.00502 0.92108 0.93619 1.98404 1.90621 1.56355 1.58014 1.21063 1.00561 0.89744 1.00675 1.23395 0.94859 0.98410 0.99572 1.20926 0.99413 0.98156 0.93954 1.20423 0.98842 0.90495 1.00242 1.19565 1.01025 0.94068 0.93985 0.75918 0.89633 1.21707 1.21512 0.78160 0.72575 0.85456 0.74460 0.91065 0.88722 0.81420 0.82489 0.83256 0.88143 0.88618 0.82498 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.68 12.86 -148.98 -1.92 -2.60 16 2 C -0.05 0.10 3.05 71.24 0.22 0.31 16 3 Si 0.77 -3.70 30.79 68.60 2.11 -1.59 16 4 C -0.19 -0.23 5.61 -18.64 -0.10 -0.34 16 5 C 0.09 -0.19 10.43 83.09 0.87 0.68 16 6 N -0.58 0.86 6.07 -187.71 -1.14 -0.27 16 7 C 0.07 0.24 7.26 38.96 0.28 0.52 16 8 C -0.07 -0.35 9.61 22.63 0.22 -0.13 16 9 C -0.14 -0.48 5.87 -20.08 -0.12 -0.59 16 10 C 0.56 2.99 7.76 86.71 0.67 3.67 16 11 O -0.58 -8.09 15.91 -4.01 -0.06 -8.15 16 12 N -0.69 1.78 5.21 -442.87 -2.31 -0.52 16 13 C 0.11 -0.31 4.33 45.58 0.20 -0.11 16 14 H 0.09 0.21 7.46 -2.39 -0.02 0.19 16 15 C -0.15 0.59 7.27 31.18 0.23 0.82 16 16 C -0.06 0.52 3.85 -11.01 -0.04 0.47 16 17 H 0.13 -1.56 8.09 -2.39 -0.02 -1.58 16 18 C -0.05 0.25 5.29 -19.87 -0.11 0.14 16 19 C -0.09 0.54 9.71 22.27 0.22 0.76 16 20 C -0.10 0.24 9.83 22.29 0.22 0.46 16 21 C -0.05 -0.12 6.32 22.34 0.14 0.02 16 22 Cl -0.06 -0.28 27.96 -2.72 -0.08 -0.36 16 23 C -0.04 -0.12 6.32 22.34 0.14 0.02 16 24 Cl -0.06 -0.31 27.96 -2.72 -0.08 -0.38 16 25 C -0.10 0.14 8.32 22.29 0.19 0.32 16 26 C -0.12 0.95 7.29 31.12 0.23 1.18 16 27 C -0.10 0.16 9.46 22.28 0.21 0.37 16 28 C -0.08 -0.04 10.03 22.20 0.22 0.18 16 29 C -0.08 -0.30 6.35 -20.14 -0.13 -0.43 16 30 H 0.39 -2.66 8.74 -74.05 -0.65 -3.30 16 31 H 0.09 -0.43 7.96 -2.39 -0.02 -0.45 16 32 H -0.29 -0.04 7.11 99.48 0.71 0.66 16 33 H -0.29 -0.19 7.04 99.48 0.70 0.51 16 34 H 0.20 -1.65 6.30 -2.91 -0.02 -1.67 16 35 H 0.43 -3.09 8.96 -92.71 -0.83 -3.92 16 36 H 0.13 0.76 7.62 -2.91 -0.02 0.73 16 37 H 0.42 -3.79 6.69 -92.71 -0.62 -4.41 16 38 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.09 -0.35 6.39 -2.39 -0.02 -0.36 16 40 H 0.17 -1.99 8.05 -2.91 -0.02 -2.02 16 41 H 0.16 -0.90 8.06 -2.91 -0.02 -0.93 16 42 H 0.15 -0.49 6.72 -2.91 -0.02 -0.51 16 43 H 0.10 -0.71 7.64 -2.39 -0.02 -0.73 16 44 H 0.10 -0.95 8.14 -2.39 -0.02 -0.97 16 45 H 0.16 -1.45 6.36 -2.91 -0.02 -1.47 16 46 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 Total: 0.00 -25.71 414.26 -0.69 -26.40 By element: Atomic # 1 Polarization: -19.88 SS G_CDS: -0.97 Total: -20.85 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 3.75 Total: 8.33 kcal Atomic # 7 Polarization: 2.65 SS G_CDS: -3.45 Total: -0.80 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -1.98 Total: -10.75 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 2.11 Total: -1.59 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.15 Total: -0.74 kcal Total: -25.71 -0.69 -26.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9750034_12335838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.632 kcal (2) G-P(sol) polarization free energy of solvation -25.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds