Wall clock time and date at job start Mon Mar 8 2021 04:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86296 * 109.47247 * 2 1 4 4 C 1.50701 * 109.46674 * 119.99939 * 2 1 3 5 5 C 1.37950 * 119.92337 * 65.25824 * 4 2 1 6 6 C 1.39595 * 119.87314 * 180.24775 * 5 4 2 7 7 C 1.47845 * 120.13500 * 179.76508 * 6 5 4 8 8 O 1.21551 * 120.00451 * 359.73049 * 7 6 5 9 9 N 1.34780 * 119.99671 * 179.72571 * 7 6 5 10 10 C 1.46503 * 120.00107 * 180.02562 * 9 7 6 11 11 H 1.08992 * 112.85047 * 23.80244 * 10 9 7 12 12 C 1.53778 * 113.61458 * 155.00234 * 10 9 7 13 13 C 1.53776 * 87.08369 * 89.19643 * 12 10 9 14 14 H 1.09000 * 113.61458 * 270.79551 * 13 12 10 15 15 C 1.50704 * 113.61447 * 139.97780 * 13 12 10 16 16 C 1.38220 * 119.97785 * 119.99913 * 15 13 12 17 17 C 1.38255 * 120.03858 * 179.97438 * 16 15 13 18 18 C 1.38301 * 119.99621 * 0.02562 * 17 16 15 19 19 Cl 1.73597 * 120.01968 * 179.97438 * 18 17 16 20 20 C 1.38486 * 119.96478 * 0.05149 * 18 17 16 21 21 Cl 1.73599 * 120.01956 * 179.97438 * 20 18 17 22 22 C 1.38244 * 119.98414 * 300.02541 * 15 13 12 23 23 C 1.53782 * 113.68632 * 252.53725 * 10 9 7 24 24 C 1.39544 * 119.71935 * 359.49778 * 6 5 4 25 25 C 1.38069 * 119.84554 * 0.24556 * 24 6 5 26 26 Br 1.89099 * 119.94093 * 179.97438 * 25 24 6 27 27 C 1.38362 * 119.92256 * 245.00032 * 4 2 1 28 28 H 0.96706 * 113.99504 * 59.99914 * 1 2 3 29 29 H 1.09000 * 109.46865 * 239.99992 * 2 1 3 30 30 H 1.48499 * 109.99944 * 298.68135 * 3 2 1 31 31 H 1.48503 * 109.99755 * 59.99669 * 3 2 1 32 32 H 1.08005 * 120.05887 * 359.97438 * 5 4 2 33 33 H 0.97005 * 120.00134 * 0.02562 * 9 7 6 34 34 H 1.09006 * 113.61688 * 334.64642 * 12 10 9 35 35 H 1.09006 * 113.61293 * 203.74809 * 12 10 9 36 36 H 1.08002 * 119.98722 * 0.02562 * 16 15 13 37 37 H 1.07995 * 120.00141 * 179.74971 * 17 16 15 38 38 H 1.08002 * 119.99658 * 359.97438 * 22 15 13 39 39 H 1.09003 * 113.61228 * 156.32792 * 23 10 9 40 40 H 1.08999 * 113.61988 * 25.41370 * 23 10 9 41 41 H 1.07998 * 120.07355 * 180.27679 * 24 6 5 42 42 H 1.07997 * 119.85459 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6888 -2.0586 1.3939 6 6 2.1500 -2.7145 2.5366 7 6 1.8889 -4.1581 2.7201 8 8 1.2673 -4.7753 1.8774 9 7 2.3403 -4.7898 3.8218 10 6 2.0821 -6.2204 4.0035 11 1 1.9051 -6.7414 3.0626 12 6 3.1062 -6.9207 4.9122 13 6 2.1920 -6.5535 6.0929 14 1 2.4144 -5.5805 6.5311 15 6 2.0699 -7.6456 7.1242 16 6 2.4614 -7.4105 8.4288 17 6 2.3494 -8.4113 9.3760 18 6 1.8459 -9.6487 9.0182 19 17 1.7056 -10.9061 10.2069 20 6 1.4551 -9.8848 7.7108 21 17 0.8236 -11.4377 7.2599 22 6 1.5669 -8.8821 6.7648 23 6 1.0316 -6.5263 5.0841 24 6 2.8633 -2.0031 3.5022 25 6 3.1040 -0.6552 3.3243 26 35 4.0696 0.3116 4.6314 27 6 2.6391 -0.0101 2.1912 28 1 -0.3933 0.4418 -0.7651 29 1 1.7923 -0.5138 -0.8900 30 1 1.5879 2.4585 -1.2242 31 1 1.5615 2.4678 1.2085 32 1 1.1394 -2.6045 0.6412 33 1 2.8361 -4.2972 4.4945 34 1 4.0763 -6.4244 4.9402 35 1 3.1835 -7.9938 4.7370 36 1 2.8542 -6.4442 8.7087 37 1 2.6592 -8.2283 10.3942 38 1 1.2612 -9.0651 5.7452 39 1 0.5418 -7.4916 4.9560 40 1 0.3270 -5.7116 5.2511 41 1 3.2266 -2.5058 4.3863 42 1 2.8294 1.0444 2.0566 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9750034_12335870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:35:23 Heat of formation + Delta-G solvation = 13.281934 kcal Electronic energy + Delta-G solvation = -29911.336026 eV Core-core repulsion = 25342.935013 eV Total energy + Delta-G solvation = -4568.401013 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 455.968 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.89832 -41.09401 -40.06121 -38.99208 -37.80096 -37.57173 -37.45081 -34.88136 -33.66382 -33.06479 -31.94551 -31.53074 -30.46124 -27.08721 -26.71791 -26.62389 -25.15528 -23.99938 -22.76709 -22.65910 -21.63441 -20.29800 -18.97085 -18.64176 -18.50935 -17.70200 -17.37885 -17.11331 -16.70891 -16.48751 -16.23536 -16.18174 -15.59816 -15.47692 -15.29265 -15.18456 -14.89186 -14.82775 -14.50081 -14.33020 -14.03925 -13.73541 -13.67364 -13.58089 -13.44537 -12.94968 -12.90538 -12.83405 -12.43163 -12.39791 -12.28788 -12.04601 -11.99999 -11.84532 -11.82946 -11.58698 -11.48105 -11.26491 -11.17453 -10.60021 -10.36089 -10.10255 -9.97676 -9.88883 -9.60195 -4.98137 -0.51018 -0.14505 -0.11806 0.05759 0.43682 0.80064 1.20021 1.20212 1.50882 1.55943 1.88072 1.94094 2.35872 2.45098 3.16014 3.36891 3.41231 3.56524 3.59287 3.62997 3.67430 3.79637 3.88248 3.91036 3.99509 4.06269 4.11603 4.15465 4.25394 4.27300 4.30284 4.50200 4.60059 4.71445 4.76654 4.77925 4.82465 4.87329 4.93982 4.97422 5.01994 5.04719 5.10165 5.14696 5.35403 5.39698 5.55506 5.61856 6.36834 6.52630 7.04568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.088 4.088 3 Si 0.758 3.242 4 C -0.079 4.079 5 C -0.030 4.030 6 C -0.136 4.136 7 C 0.564 3.436 8 O -0.571 6.571 9 N -0.691 5.691 10 C 0.113 3.887 11 H 0.088 0.912 12 C -0.124 4.124 13 C -0.064 4.064 14 H 0.128 0.872 15 C -0.051 4.051 16 C -0.092 4.092 17 C -0.100 4.100 18 C -0.053 4.053 19 Cl -0.064 7.064 20 C -0.045 4.045 21 Cl -0.063 7.063 22 C -0.102 4.102 23 C -0.146 4.146 24 C -0.042 4.042 25 C -0.099 4.099 26 Br -0.026 7.026 27 C -0.064 4.064 28 H 0.398 0.602 29 H 0.102 0.898 30 H -0.280 1.280 31 H -0.290 1.290 32 H 0.132 0.868 33 H 0.416 0.584 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.168 0.832 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.167 0.833 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.959 5.291 0.345 7.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.196 4.196 3 Si 0.662 3.338 4 C -0.080 4.080 5 C -0.050 4.050 6 C -0.140 4.140 7 C 0.352 3.648 8 O -0.451 6.451 9 N -0.343 5.343 10 C 0.008 3.992 11 H 0.106 0.894 12 C -0.162 4.162 13 C -0.082 4.082 14 H 0.145 0.855 15 C -0.052 4.052 16 C -0.110 4.110 17 C -0.119 4.119 18 C -0.080 4.080 19 Cl -0.035 7.035 20 C -0.072 4.072 21 Cl -0.034 7.034 22 C -0.120 4.120 23 C -0.185 4.185 24 C -0.062 4.062 25 C -0.179 4.179 26 Br 0.059 6.941 27 C -0.084 4.084 28 H 0.249 0.751 29 H 0.120 0.880 30 H -0.207 1.207 31 H -0.217 1.217 32 H 0.150 0.850 33 H 0.255 0.745 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.186 0.814 37 H 0.175 0.825 38 H 0.168 0.832 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.185 0.815 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.709 5.452 0.871 7.942 hybrid contribution -1.652 -0.771 -0.488 1.887 sum 4.057 4.681 0.383 6.206 Atomic orbital electron populations 1.86546 1.18148 1.80809 1.51251 1.25027 0.84448 1.12064 0.98050 0.94251 0.90242 0.72009 0.77329 1.19332 0.99005 0.93375 0.96274 1.21277 0.93919 0.93724 0.96045 1.19857 1.03710 0.93262 0.97203 1.18272 0.78273 0.86642 0.81574 1.90803 1.41919 1.68004 1.44363 1.45438 1.56717 1.09975 1.22197 1.21895 0.97570 0.80685 0.99039 0.89356 1.23401 0.98128 1.02073 0.92586 1.21702 0.97091 0.97470 0.91958 0.85455 1.19909 0.96399 0.93813 0.95074 1.21501 0.97913 1.00189 0.91431 1.21350 0.98180 0.90149 1.02176 1.21048 1.05398 0.92381 0.89220 1.98402 1.96574 1.52086 1.56413 1.20950 1.03563 0.89180 0.93523 1.98404 1.85233 1.27156 1.92597 1.21067 0.99832 0.91588 0.99534 1.23594 0.96743 1.03177 0.94955 1.21474 0.94253 0.92043 0.98466 1.21704 1.04229 0.95383 0.96555 1.96852 1.72145 1.73650 1.51421 1.21363 0.94998 1.00565 0.91464 0.75081 0.88028 1.20661 1.21699 0.85005 0.74512 0.88504 0.88077 0.81415 0.82524 0.83215 0.88626 0.91020 0.81527 0.83099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.70 12.81 -148.98 -1.91 -2.61 16 2 C -0.09 0.18 2.79 71.24 0.20 0.38 16 3 Si 0.76 -2.91 29.84 68.60 2.05 -0.86 16 4 C -0.08 -0.03 5.38 -19.90 -0.11 -0.14 16 5 C -0.03 -0.09 9.23 22.53 0.21 0.12 16 6 C -0.14 -0.09 5.87 -20.09 -0.12 -0.20 16 7 C 0.56 1.65 7.77 86.79 0.67 2.32 16 8 O -0.57 -6.76 15.95 -3.87 -0.06 -6.83 16 9 N -0.69 3.21 5.22 -442.91 -2.31 0.90 16 10 C 0.11 -0.50 4.32 45.52 0.20 -0.30 16 11 H 0.09 0.05 7.46 -2.39 -0.02 0.04 16 12 C -0.12 1.12 7.29 31.12 0.23 1.34 16 13 C -0.06 0.60 3.86 -11.01 -0.04 0.55 16 14 H 0.13 -1.71 8.09 -2.39 -0.02 -1.73 16 15 C -0.05 0.29 5.29 -19.87 -0.11 0.19 16 16 C -0.09 0.60 9.71 22.27 0.22 0.82 16 17 C -0.10 0.29 9.83 22.29 0.22 0.51 16 18 C -0.05 -0.10 6.32 22.34 0.14 0.04 16 19 Cl -0.06 -0.26 27.96 -2.72 -0.08 -0.34 16 20 C -0.04 -0.10 6.32 22.34 0.14 0.04 16 21 Cl -0.06 -0.28 27.96 -2.72 -0.08 -0.36 16 22 C -0.10 0.21 8.39 22.29 0.19 0.39 16 23 C -0.15 0.79 7.26 31.12 0.23 1.01 16 24 C -0.04 0.18 9.28 22.54 0.21 0.38 16 25 C -0.10 0.25 6.22 22.27 0.14 0.38 16 26 Br -0.03 0.09 33.69 -20.37 -0.69 -0.60 16 27 C -0.06 0.09 8.40 22.34 0.19 0.28 16 28 H 0.40 -2.69 8.74 -74.05 -0.65 -3.34 16 29 H 0.10 -0.60 7.96 -2.39 -0.02 -0.62 16 30 H -0.28 -0.08 7.11 99.48 0.71 0.62 16 31 H -0.29 -0.78 7.05 99.48 0.70 -0.08 16 32 H 0.13 0.72 7.65 -2.91 -0.02 0.70 16 33 H 0.42 -4.66 6.74 -92.70 -0.62 -5.29 16 34 H 0.10 -1.10 8.14 -2.38 -0.02 -1.12 16 35 H 0.10 -0.84 7.72 -2.38 -0.02 -0.86 16 36 H 0.17 -2.10 8.05 -2.91 -0.02 -2.12 16 37 H 0.16 -0.96 8.06 -2.91 -0.02 -0.98 16 38 H 0.15 -0.61 6.66 -2.91 -0.02 -0.63 16 39 H 0.10 -0.46 6.31 -2.39 -0.02 -0.48 16 40 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.17 -1.82 6.40 -2.91 -0.02 -1.84 16 42 H 0.15 -0.59 4.85 -2.91 -0.01 -0.61 16 Total: 0.00 -20.77 402.10 -0.39 -21.16 By element: Atomic # 1 Polarization: -18.47 SS G_CDS: -0.11 Total: -18.59 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 2.80 Total: 8.13 kcal Atomic # 7 Polarization: 3.21 SS G_CDS: -2.31 Total: 0.90 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -1.97 Total: -9.44 kcal Atomic # 14 Polarization: -2.91 SS G_CDS: 2.05 Total: -0.86 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.15 Total: -0.70 kcal Atomic # 35 Polarization: 0.09 SS G_CDS: -0.69 Total: -0.60 kcal Total: -20.77 -0.39 -21.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9750034_12335870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.439 kcal (2) G-P(sol) polarization free energy of solvation -20.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds