Wall clock time and date at job start Mon Mar 8 2021 04:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86300 * 109.47427 * 2 1 4 4 C 1.50704 * 109.47116 * 120.00195 * 2 1 3 5 5 C 1.34828 * 125.65400 * 64.96950 * 4 2 1 6 6 C 1.40800 * 107.04950 * 180.02562 * 5 4 2 7 7 C 1.36105 * 106.73149 * 0.02562 * 6 5 4 8 8 C 1.47564 * 125.93937 * 180.02562 * 7 6 5 9 9 C 1.39923 * 119.96138 * 359.71979 * 8 7 6 10 10 C 1.36423 * 120.28195 * 179.75915 * 9 8 7 11 11 C 1.39875 * 120.18208 * 0.52070 * 10 9 8 12 12 C 1.47298 * 120.04402 * 179.76143 * 11 10 9 13 13 O 1.21627 * 120.00350 * 179.97438 * 12 11 10 14 14 N 1.34779 * 120.00331 * 359.97438 * 12 11 10 15 15 C 1.46490 * 120.00433 * 180.02562 * 14 12 11 16 16 H 1.09003 * 112.84937 * 336.19828 * 15 14 12 17 17 C 1.53780 * 113.61613 * 107.50294 * 15 14 12 18 18 C 1.53779 * 87.08369 * 89.11838 * 17 15 14 19 19 H 1.09001 * 113.61042 * 270.88772 * 18 17 15 20 20 C 1.50695 * 113.69129 * 139.99427 * 18 17 15 21 21 C 1.38213 * 119.97883 * 142.46679 * 20 18 17 22 22 C 1.38350 * 119.99609 * 179.97438 * 21 20 18 23 23 Cl 1.73599 * 120.01678 * 179.97438 * 22 21 20 24 24 C 1.38439 * 119.96190 * 0.02562 * 22 21 20 25 25 Cl 1.73607 * 120.01564 * 179.97438 * 24 22 21 26 26 C 1.38344 * 119.96446 * 359.97438 * 24 22 21 27 27 C 1.38201 * 119.99997 * 359.72540 * 26 24 22 28 28 C 1.53783 * 87.08090 * 25.43318 * 18 17 15 29 29 C 1.40404 * 119.91075 * 359.74031 * 11 10 9 30 30 O 1.35679 * 120.13751 * 179.97438 * 29 11 10 31 31 C 1.38267 * 119.72549 * 359.97438 * 29 11 10 32 32 O 1.34228 * 125.65131 * 244.97401 * 4 2 1 33 33 H 0.96706 * 114.00197 * 59.99937 * 1 2 3 34 34 H 1.09003 * 109.47143 * 239.99588 * 2 1 3 35 35 H 1.48498 * 109.99719 * 298.68004 * 3 2 1 36 36 H 1.48493 * 110.00034 * 59.99999 * 3 2 1 37 37 H 1.08003 * 126.47402 * 0.02607 * 5 4 2 38 38 H 1.08000 * 126.63150 * 180.26218 * 6 5 4 39 39 H 1.07997 * 119.85733 * 0.02890 * 9 8 7 40 40 H 1.07997 * 119.91093 * 180.24070 * 10 9 8 41 41 H 0.97000 * 119.99490 * 359.97438 * 14 12 11 42 42 H 1.09005 * 113.61709 * 203.66845 * 17 15 14 43 43 H 1.08998 * 113.61645 * 334.56942 * 17 15 14 44 44 H 1.07995 * 120.00219 * 0.02562 * 21 20 18 45 45 H 1.07999 * 120.00132 * 179.97438 * 26 24 22 46 46 H 1.08001 * 119.98261 * 180.29600 * 27 26 24 47 47 H 1.08998 * 113.61498 * 220.02395 * 28 18 17 48 48 H 1.08997 * 113.68769 * 89.12751 * 28 18 17 49 49 H 0.96704 * 114.00131 * 270.01991 * 30 29 11 50 50 H 1.08002 * 120.09562 * 179.97438 * 31 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7562 -2.0179 1.5096 6 6 2.3797 -2.2627 2.7481 7 6 2.9067 -1.0782 3.1624 8 6 3.6559 -0.8540 4.4137 9 6 3.8720 -1.9161 5.2986 10 6 4.5680 -1.7173 6.4550 11 6 5.0613 -0.4468 6.7693 12 6 5.8078 -0.2344 8.0212 13 8 6.2368 0.8706 8.2936 14 7 6.0155 -1.2646 8.8651 15 6 6.7574 -1.0534 10.1104 16 1 7.4235 -0.1917 10.0653 17 6 5.8725 -1.0851 11.3677 18 6 6.1255 -2.6013 11.4118 19 1 5.4007 -3.1816 10.8409 20 6 6.3405 -3.1390 12.8030 21 6 5.8333 -4.3768 13.1510 22 6 6.0309 -4.8710 14.4280 23 17 5.3935 -6.4253 14.8659 24 6 6.7362 -4.1250 15.3567 25 17 6.9844 -4.7436 16.9598 26 6 7.2431 -2.8863 15.0067 27 6 7.0502 -2.3967 13.7288 28 6 7.4322 -2.3260 10.6491 29 6 4.8443 0.6258 5.8897 30 8 5.3203 1.8603 6.1902 31 6 4.1435 0.4188 4.7159 32 8 2.6271 -0.1465 2.2302 33 1 -0.3934 0.4417 -0.7651 34 1 1.7923 -0.5139 -0.8900 35 1 1.5879 2.4585 -1.2242 36 1 1.5616 2.4678 1.2084 37 1 1.2360 -2.7408 0.8986 38 1 2.4330 -3.2084 3.2669 39 1 3.4900 -2.8984 5.0631 40 1 4.7346 -2.5422 7.1319 41 1 5.6730 -2.1458 8.6481 42 1 6.2977 -0.5466 12.2147 43 1 4.8323 -0.8214 11.1763 44 1 5.2835 -4.9584 12.4259 45 1 7.7931 -2.3036 15.7308 46 1 7.4502 -1.4318 13.4544 47 1 7.6511 -3.0640 9.8774 48 1 8.2846 -2.1268 11.2984 49 1 4.7033 2.4077 6.6950 50 1 3.9728 1.2397 4.0351 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9750034_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:36:11 Heat of formation + Delta-G solvation = -10.973417 kcal Electronic energy + Delta-G solvation = -38274.735358 eV Core-core repulsion = 32867.520131 eV Total energy + Delta-G solvation = -5407.215226 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 460.072 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -43.73671 -41.85148 -41.09899 -39.93777 -38.82596 -38.12825 -37.85979 -37.55767 -37.40021 -34.77710 -34.19785 -33.30331 -32.12854 -31.55832 -31.23606 -30.44547 -27.24697 -26.66605 -26.14131 -24.50174 -24.04825 -24.01421 -22.89075 -22.37306 -21.99522 -21.31589 -20.27355 -19.58160 -18.88785 -18.82394 -18.38994 -18.01704 -17.34129 -17.16643 -17.07358 -16.69918 -16.52628 -16.36042 -16.14762 -16.00979 -15.92483 -15.56276 -15.45122 -15.15540 -15.03798 -14.79623 -14.50504 -14.37716 -14.18589 -14.10453 -13.97607 -13.76417 -13.55256 -13.53464 -13.46999 -13.33097 -12.93917 -12.90551 -12.87353 -12.68326 -12.39853 -12.33874 -12.16325 -11.95101 -11.90156 -11.79740 -11.55115 -11.24122 -11.12553 -10.92355 -10.76784 -10.55835 -10.08468 -9.97660 -9.94031 -9.58652 -9.00157 -4.99700 -0.78431 -0.11783 0.07635 0.15765 0.63311 0.81096 1.11466 1.20895 1.35064 1.45247 1.69317 1.89260 1.93385 2.03838 2.36706 2.65121 3.01896 3.25421 3.45020 3.53310 3.55551 3.62894 3.65834 3.70907 3.74016 3.81541 3.95025 3.99924 4.01287 4.02709 4.11522 4.20532 4.21647 4.32064 4.39323 4.42791 4.62803 4.67071 4.69849 4.71662 4.79613 4.80976 4.85612 4.90358 4.92176 4.98716 5.04681 5.07548 5.10282 5.11575 5.18171 5.23423 5.39961 5.44221 5.54747 5.60447 5.63983 5.98847 6.49040 6.49712 6.69995 7.19552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.038 4.038 3 Si 0.753 3.247 4 C -0.017 4.017 5 C -0.181 4.181 6 C -0.170 4.170 7 C 0.003 3.997 8 C 0.025 3.975 9 C -0.109 4.109 10 C -0.049 4.049 11 C -0.178 4.178 12 C 0.559 3.441 13 O -0.562 6.562 14 N -0.695 5.695 15 C 0.114 3.886 16 H 0.086 0.914 17 C -0.141 4.141 18 C -0.066 4.066 19 H 0.120 0.880 20 C -0.049 4.049 21 C -0.098 4.098 22 C -0.044 4.044 23 Cl -0.061 7.061 24 C -0.053 4.053 25 Cl -0.064 7.064 26 C -0.100 4.100 27 C -0.098 4.098 28 C -0.124 4.124 29 C 0.161 3.839 30 O -0.495 6.495 31 C -0.156 4.156 32 O -0.180 6.180 33 H 0.405 0.595 34 H 0.131 0.869 35 H -0.260 1.260 36 H -0.312 1.312 37 H 0.169 0.831 38 H 0.186 0.814 39 H 0.171 0.829 40 H 0.175 0.825 41 H 0.415 0.585 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.158 0.842 45 H 0.155 0.845 46 H 0.160 0.840 47 H 0.091 0.909 48 H 0.105 0.895 49 H 0.408 0.592 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 -4.110 -4.791 6.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.147 4.147 3 Si 0.657 3.343 4 C -0.066 4.066 5 C -0.200 4.200 6 C -0.189 4.189 7 C -0.047 4.047 8 C 0.025 3.975 9 C -0.127 4.127 10 C -0.067 4.067 11 C -0.182 4.182 12 C 0.348 3.652 13 O -0.441 6.441 14 N -0.348 5.348 15 C 0.009 3.991 16 H 0.105 0.895 17 C -0.180 4.180 18 C -0.084 4.084 19 H 0.138 0.862 20 C -0.050 4.050 21 C -0.116 4.116 22 C -0.072 4.072 23 Cl -0.032 7.032 24 C -0.081 4.081 25 Cl -0.035 7.035 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.162 4.162 29 C 0.114 3.886 30 O -0.308 6.308 31 C -0.174 4.174 32 O -0.078 6.078 33 H 0.258 0.742 34 H 0.148 0.852 35 H -0.185 1.185 36 H -0.240 1.240 37 H 0.187 0.813 38 H 0.203 0.797 39 H 0.188 0.812 40 H 0.192 0.808 41 H 0.254 0.746 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.175 0.825 45 H 0.172 0.828 46 H 0.178 0.822 47 H 0.110 0.890 48 H 0.123 0.877 49 H 0.268 0.732 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.351 -2.873 -4.151 5.061 hybrid contribution -1.853 -0.248 0.139 1.875 sum -1.502 -3.121 -4.012 5.301 Atomic orbital electron populations 1.86514 1.17368 1.80806 1.51870 1.23934 0.84616 1.11921 0.94187 0.93773 0.90779 0.72536 0.77184 1.21845 1.00093 0.93267 0.91433 1.21840 1.03807 0.95800 0.98578 1.22259 1.00686 0.98965 0.96998 1.20628 1.04904 0.88002 0.91121 1.17963 0.95373 0.94000 0.90188 1.21064 0.99326 0.99269 0.93052 1.21182 0.93601 0.95187 0.96776 1.20518 1.05577 0.96027 0.96089 1.18179 0.79239 0.84438 0.83357 1.90828 1.51511 1.25453 1.76301 1.45437 1.56648 1.12272 1.20423 1.21865 0.94333 0.99855 0.83090 0.89550 1.23582 1.01039 0.95269 0.98081 1.21671 0.99308 0.96165 0.91230 0.86174 1.19913 0.95764 0.92893 0.96428 1.21177 1.00354 0.96435 0.93658 1.20987 1.01484 0.89203 0.95486 1.98404 1.85168 1.26464 1.93180 1.21035 1.03315 0.96547 0.87175 1.98402 1.95521 1.87350 1.22240 1.21292 0.99284 0.93000 0.98257 1.21388 0.97588 1.01084 0.91574 1.23412 0.96809 0.96236 0.99771 1.18473 0.92187 0.85828 0.92067 1.84728 1.45625 1.23635 1.76807 1.21565 0.99667 0.98079 0.98124 1.83911 1.58302 1.38772 1.26818 0.74209 0.85202 1.18534 1.24027 0.81346 0.79703 0.81202 0.80752 0.74624 0.88016 0.91110 0.82473 0.82777 0.82229 0.89030 0.87681 0.73224 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.14 12.86 -148.98 -1.92 -2.06 16 2 C -0.04 0.06 2.97 71.24 0.21 0.27 16 3 Si 0.75 -0.45 32.11 68.60 2.20 1.75 16 4 C -0.02 -0.05 6.24 24.90 0.16 0.10 16 5 C -0.18 -0.17 10.78 22.11 0.24 0.07 16 6 C -0.17 0.14 10.26 22.40 0.23 0.37 16 7 C 0.00 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.02 5.87 -20.08 -0.12 -0.10 16 9 C -0.11 0.62 9.48 22.25 0.21 0.83 16 10 C -0.05 0.33 9.47 22.24 0.21 0.54 16 11 C -0.18 -0.15 5.89 -19.97 -0.12 -0.27 16 12 C 0.56 1.73 7.75 86.63 0.67 2.40 16 13 O -0.56 -6.72 14.74 16.88 0.25 -6.47 16 14 N -0.69 3.50 5.21 -443.42 -2.31 1.19 16 15 C 0.11 -0.58 4.32 45.52 0.20 -0.38 16 16 H 0.09 0.01 7.46 -2.39 -0.02 0.00 16 17 C -0.14 0.98 7.26 31.12 0.23 1.21 16 18 C -0.07 0.64 3.85 -11.02 -0.04 0.59 16 19 H 0.12 -1.55 8.09 -2.39 -0.02 -1.57 16 20 C -0.05 0.30 5.29 -19.87 -0.11 0.19 16 21 C -0.10 0.34 9.49 22.29 0.21 0.55 16 22 C -0.04 -0.05 6.32 22.34 0.14 0.09 16 23 Cl -0.06 -0.19 27.96 -2.72 -0.08 -0.27 16 24 C -0.05 -0.09 6.32 22.34 0.14 0.05 16 25 Cl -0.06 -0.25 27.96 -2.72 -0.08 -0.33 16 26 C -0.10 0.24 9.83 22.29 0.22 0.46 16 27 C -0.10 0.56 8.60 22.27 0.19 0.75 16 28 C -0.12 1.19 7.29 31.12 0.23 1.42 16 29 C 0.16 0.75 6.71 22.80 0.15 0.91 16 30 O -0.49 -3.59 11.56 -68.98 -0.80 -4.38 16 31 C -0.16 -0.57 9.65 22.61 0.22 -0.35 16 32 O -0.18 -1.00 8.79 -5.92 -0.05 -1.05 16 33 H 0.41 -3.56 8.74 -74.05 -0.65 -4.21 16 34 H 0.13 -1.04 7.96 -2.39 -0.02 -1.06 16 35 H -0.26 -0.19 7.11 99.48 0.71 0.52 16 36 H -0.31 -3.00 7.11 99.48 0.71 -2.30 16 37 H 0.17 -0.44 8.06 -2.91 -0.02 -0.47 16 38 H 0.19 -1.44 7.24 -2.91 -0.02 -1.46 16 39 H 0.17 -2.05 6.95 -2.91 -0.02 -2.07 16 40 H 0.18 -2.65 6.38 -2.91 -0.02 -2.67 16 41 H 0.42 -4.96 6.71 -92.71 -0.62 -5.58 16 42 H 0.10 -0.79 6.33 -2.38 -0.02 -0.80 16 43 H 0.07 -0.35 8.14 -2.39 -0.02 -0.36 16 44 H 0.16 -1.14 8.05 -2.91 -0.02 -1.16 16 45 H 0.15 -0.80 8.06 -2.91 -0.02 -0.83 16 46 H 0.16 -1.58 6.68 -2.91 -0.02 -1.60 16 47 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 48 H 0.10 -1.03 7.72 -2.39 -0.02 -1.05 16 49 H 0.41 0.15 9.06 -74.05 -0.67 -0.52 16 50 H 0.13 0.58 7.90 -2.91 -0.02 0.56 16 Total: 0.00 -29.45 453.75 0.04 -29.41 By element: Atomic # 1 Polarization: -26.84 SS G_CDS: -0.83 Total: -27.67 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 3.64 Total: 9.88 kcal Atomic # 7 Polarization: 3.50 SS G_CDS: -2.31 Total: 1.19 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -2.52 Total: -13.96 kcal Atomic # 14 Polarization: -0.45 SS G_CDS: 2.20 Total: 1.75 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.15 Total: -0.60 kcal Total: -29.45 0.04 -29.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9750034_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.441 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds