Wall clock time and date at job start Mon Mar 8 2021 04:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86296 * 109.47440 * 2 1 4 4 C 1.50698 * 109.47258 * 239.99600 * 2 1 3 5 5 C 1.32695 * 124.68712 * 300.00587 * 4 2 1 6 6 C 1.44509 * 113.09940 * 180.30234 * 5 4 2 7 7 C 1.47041 * 123.49190 * 179.70815 * 6 5 4 8 8 O 1.21648 * 120.00235 * 179.97438 * 7 6 5 9 9 N 1.34781 * 119.99728 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99599 * 179.97438 * 9 7 6 11 11 H 1.08994 * 112.85317 * 336.19949 * 10 9 7 12 12 C 1.53786 * 113.61228 * 107.50674 * 10 9 7 13 13 C 1.53781 * 87.08132 * 89.11424 * 12 10 9 14 14 H 1.09006 * 113.68954 * 270.87258 * 13 12 10 15 15 C 1.50698 * 113.61314 * 139.98247 * 13 12 10 16 16 C 1.38218 * 119.97931 * 322.22941 * 15 13 12 17 17 C 1.38255 * 120.03416 * 179.72696 * 16 15 13 18 18 C 1.38293 * 120.00139 * 0.54639 * 17 16 15 19 19 Cl 1.73606 * 120.02025 * 179.70362 * 18 17 16 20 20 C 1.38487 * 119.96442 * 359.72483 * 18 17 16 21 21 Cl 1.73597 * 120.02452 * 180.02562 * 20 18 17 22 22 C 1.38252 * 119.98247 * 142.50039 * 15 13 12 23 23 C 1.53777 * 87.08275 * 25.43239 * 13 12 10 24 24 C 1.36226 * 113.01407 * 359.50709 * 6 5 4 25 25 Cl 1.73598 * 124.60190 * 180.21941 * 24 6 5 26 26 S 1.70443 * 110.78833 * 0.47600 * 24 6 5 27 27 H 0.96708 * 113.99607 * 60.00071 * 1 2 3 28 28 H 1.09005 * 109.46900 * 119.99883 * 2 1 3 29 29 H 1.48504 * 110.00088 * 59.99478 * 3 2 1 30 30 H 1.48506 * 110.00349 * 181.31750 * 3 2 1 31 31 H 1.08002 * 123.44619 * 0.02956 * 5 4 2 32 32 H 0.97002 * 120.00254 * 359.97438 * 9 7 6 33 33 H 1.09001 * 113.61257 * 203.66700 * 12 10 9 34 34 H 1.08999 * 113.61142 * 334.56615 * 12 10 9 35 35 H 1.07997 * 119.98741 * 0.02562 * 16 15 13 36 36 H 1.08001 * 119.99561 * 180.24838 * 17 16 15 37 37 H 1.07997 * 119.99400 * 359.97438 * 22 15 13 38 38 H 1.08995 * 113.61622 * 220.02122 * 23 13 12 39 39 H 1.08997 * 113.69363 * 89.12575 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6686 -1.9757 -1.5320 6 6 2.2831 -2.4033 -2.7680 7 6 2.1469 -3.7615 -3.3145 8 8 2.6919 -4.0531 -4.3623 9 7 1.4173 -4.6832 -2.6551 10 6 1.2811 -6.0363 -3.1999 11 1 1.4363 -6.0762 -4.2780 12 6 2.0775 -7.0968 -2.4214 13 6 0.8312 -7.2699 -1.5371 14 1 0.8084 -6.6011 -0.6767 15 6 0.5448 -8.7036 -1.1717 16 6 0.7560 -9.7078 -2.0976 17 6 0.4989 -11.0241 -1.7617 18 6 0.0196 -11.3354 -0.5024 19 17 -0.3107 -12.9872 -0.0826 20 6 -0.1973 -10.3286 0.4235 21 17 -0.7984 -10.7177 2.0050 22 6 0.0657 -9.0131 0.0877 23 6 0.0086 -6.7630 -2.7334 24 6 2.9980 -1.4163 -3.3767 25 17 3.8526 -1.5996 -4.8766 26 16 2.9454 0.0209 -2.4619 27 1 -0.3933 0.4417 -0.7651 28 1 1.7923 -0.5138 0.8900 29 1 1.5615 2.4679 1.2085 30 1 3.5347 1.7702 -0.0321 31 1 1.0616 -2.6212 -0.9144 32 1 0.9824 -4.4506 -1.8198 33 1 2.3205 -7.9806 -3.0113 34 1 2.9381 -6.6925 -1.8886 35 1 1.1265 -9.4647 -3.0825 36 1 0.6680 -11.8087 -2.4843 37 1 -0.1028 -8.2274 0.8093 38 1 -0.8008 -6.0893 -2.4526 39 1 -0.3148 -7.5545 -3.4094 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9750034_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:54 Heat of formation + Delta-G solvation = 9.931872 kcal Electronic energy + Delta-G solvation = -28704.938342 eV Core-core repulsion = 24205.562515 eV Total energy + Delta-G solvation = -4499.375826 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.975 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.72207 -40.71696 -39.39222 -38.68509 -37.94561 -37.57323 -37.42776 -36.91656 -34.49850 -32.17287 -31.73164 -31.37466 -27.13563 -26.69863 -26.67097 -25.30105 -24.05788 -22.71515 -22.25846 -20.84134 -20.21152 -19.42339 -18.54325 -17.90294 -17.73686 -17.20254 -16.90598 -16.55838 -16.41886 -16.06737 -15.84546 -15.69519 -15.62846 -15.20925 -14.97657 -14.79259 -14.57664 -14.46143 -14.28199 -14.04802 -13.68655 -13.54238 -13.35812 -12.95905 -12.93648 -12.88007 -12.57737 -12.41319 -12.39726 -12.35810 -12.13838 -11.96022 -11.86109 -11.81192 -11.56945 -11.26163 -10.95476 -10.58615 -10.15894 -9.99463 -9.87397 -9.65018 -9.59242 -5.12254 -0.61914 -0.18400 -0.13396 0.05840 0.49307 0.73459 0.79523 1.05526 1.19228 1.20242 1.57744 1.91012 2.12847 2.17151 2.35191 3.29199 3.43571 3.53413 3.60839 3.68269 3.70323 3.83879 3.89730 3.94414 4.00483 4.09711 4.19228 4.37417 4.38337 4.46709 4.65318 4.68213 4.78794 4.79357 4.85335 4.90056 4.97183 4.98592 5.03246 5.08465 5.16239 5.38359 5.58717 5.61867 6.46189 6.71593 7.15519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.017 4.017 3 Si 0.708 3.292 4 C -0.228 4.228 5 C -0.067 4.067 6 C -0.166 4.166 7 C 0.574 3.426 8 O -0.558 6.558 9 N -0.692 5.692 10 C 0.116 3.884 11 H 0.090 0.910 12 C -0.142 4.142 13 C -0.066 4.066 14 H 0.116 0.884 15 C -0.050 4.050 16 C -0.098 4.098 17 C -0.099 4.099 18 C -0.053 4.053 19 Cl -0.063 7.063 20 C -0.044 4.044 21 Cl -0.061 7.061 22 C -0.099 4.099 23 C -0.123 4.123 24 C -0.139 4.139 25 Cl 0.003 6.997 26 S 0.261 5.739 27 H 0.399 0.601 28 H 0.134 0.866 29 H -0.267 1.267 30 H -0.261 1.261 31 H 0.181 0.819 32 H 0.414 0.586 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.090 0.910 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 5.177 0.460 5.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.131 4.131 3 Si 0.611 3.389 4 C -0.346 4.346 5 C -0.095 4.095 6 C -0.186 4.186 7 C 0.360 3.640 8 O -0.437 6.437 9 N -0.344 5.344 10 C 0.010 3.990 11 H 0.108 0.892 12 C -0.180 4.180 13 C -0.085 4.085 14 H 0.134 0.866 15 C -0.050 4.050 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.081 4.081 19 Cl -0.034 7.034 20 C -0.071 4.071 21 Cl -0.032 7.032 22 C -0.117 4.117 23 C -0.161 4.161 24 C -0.286 4.286 25 Cl 0.032 6.968 26 S 0.526 5.474 27 H 0.249 0.751 28 H 0.151 0.849 29 H -0.192 1.192 30 H -0.187 1.187 31 H 0.198 0.802 32 H 0.252 0.748 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.179 0.821 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.108 0.892 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.882 6.494 0.539 6.576 hybrid contribution -0.499 -2.382 0.707 2.534 sum -1.380 4.112 1.245 4.513 Atomic orbital electron populations 1.86516 1.16045 1.81942 1.50512 1.24387 0.85570 1.08561 0.94557 0.94321 0.79864 0.76194 0.88491 1.24939 1.07247 0.99284 1.03108 1.21126 0.99205 0.95366 0.93844 1.20329 1.05010 0.94792 0.98466 1.17647 0.78571 0.84173 0.83637 1.90862 1.47953 1.80935 1.23971 1.45385 1.51795 1.10552 1.26703 1.21873 0.97695 0.80614 0.98778 0.89169 1.23588 0.96820 0.99465 0.98140 1.21661 0.96963 0.91367 0.98464 0.86556 1.19910 0.96499 0.96332 0.92284 1.21388 0.98344 0.90811 1.01037 1.21301 0.97923 0.98649 0.93870 1.21035 1.05530 0.85555 0.95958 1.98402 1.93865 1.17544 1.93610 1.20980 1.04008 0.94554 0.87607 1.98403 1.86290 1.94529 1.23990 1.21164 0.99047 0.93663 0.97848 1.23402 0.96024 1.00115 0.96558 1.25798 1.03761 1.02479 0.96554 1.98428 1.73846 1.97271 1.27278 1.83291 1.46281 1.07288 1.10502 0.75088 0.84860 1.19216 1.18689 0.80177 0.74783 0.87866 0.91352 0.82148 0.82662 0.82680 0.89155 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 4.02 12.85 -148.98 -1.91 2.11 16 2 C -0.02 0.13 2.94 71.24 0.21 0.34 16 3 Si 0.71 -4.58 30.91 68.60 2.12 -2.46 16 4 C -0.23 1.37 5.68 24.51 0.14 1.51 16 5 C -0.07 0.37 9.71 22.70 0.22 0.59 16 6 C -0.17 -0.11 5.98 -19.84 -0.12 -0.23 16 7 C 0.57 1.97 7.79 86.55 0.67 2.64 16 8 O -0.56 -6.40 14.51 -4.18 -0.06 -6.46 16 9 N -0.69 2.78 5.24 -443.64 -2.33 0.45 16 10 C 0.12 -0.53 4.33 45.52 0.20 -0.33 16 11 H 0.09 0.00 7.46 -2.39 -0.02 -0.02 16 12 C -0.14 0.85 7.25 31.12 0.23 1.08 16 13 C -0.07 0.57 3.86 -11.02 -0.04 0.53 16 14 H 0.12 -1.28 8.09 -2.38 -0.02 -1.30 16 15 C -0.05 0.26 5.29 -19.87 -0.11 0.15 16 16 C -0.10 0.50 8.60 22.27 0.19 0.70 16 17 C -0.10 0.20 9.83 22.29 0.22 0.42 16 18 C -0.05 -0.12 6.32 22.34 0.14 0.02 16 19 Cl -0.06 -0.27 27.96 -2.72 -0.08 -0.35 16 20 C -0.04 -0.08 6.32 22.34 0.14 0.06 16 21 Cl -0.06 -0.23 27.96 -2.72 -0.08 -0.31 16 22 C -0.10 0.24 9.49 22.29 0.21 0.45 16 23 C -0.12 1.10 7.29 31.12 0.23 1.32 16 24 C -0.14 -0.34 6.87 67.35 0.46 0.12 16 25 Cl 0.00 0.02 27.20 -2.72 -0.07 -0.06 16 26 S 0.26 -0.92 20.17 -56.49 -1.14 -2.06 16 27 H 0.40 -5.82 8.70 -74.05 -0.64 -6.46 16 28 H 0.13 -1.10 7.96 -2.38 -0.02 -1.12 16 29 H -0.27 -0.05 7.11 99.48 0.71 0.66 16 30 H -0.26 0.48 7.11 99.48 0.71 1.18 16 31 H 0.18 -1.97 7.10 -2.91 -0.02 -1.99 16 32 H 0.41 -4.10 7.24 -92.71 -0.67 -4.77 16 33 H 0.10 -0.74 6.32 -2.39 -0.02 -0.75 16 34 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 35 H 0.16 -1.54 6.67 -2.91 -0.02 -1.55 16 36 H 0.16 -0.78 8.06 -2.91 -0.02 -0.80 16 37 H 0.16 -0.91 8.05 -2.91 -0.02 -0.93 16 38 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H 0.11 -1.01 7.72 -2.39 -0.02 -1.03 16 Total: 0.00 -19.17 388.23 -0.67 -19.84 By element: Atomic # 1 Polarization: -19.97 SS G_CDS: -0.12 Total: -20.08 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 2.99 Total: 9.38 kcal Atomic # 7 Polarization: 2.78 SS G_CDS: -2.33 Total: 0.45 kcal Atomic # 8 Polarization: -2.38 SS G_CDS: -1.97 Total: -4.35 kcal Atomic # 14 Polarization: -4.58 SS G_CDS: 2.12 Total: -2.46 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -1.14 Total: -2.06 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.23 Total: -0.71 kcal Total: -19.17 -0.67 -19.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9750034_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.770 kcal (2) G-P(sol) polarization free energy of solvation -19.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds