Wall clock time and date at job start Mon Mar 8 2021 04:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42910 * 1 3 3 Si 1.86294 * 109.47056 * 2 1 4 4 C 1.50692 * 109.47076 * 120.00357 * 2 1 3 5 5 C 1.34499 * 125.49111 * 209.97613 * 4 2 1 6 6 C 1.46754 * 106.36320 * 180.02562 * 5 4 2 7 7 C 1.47264 * 126.96813 * 179.97438 * 6 5 4 8 8 O 1.21622 * 120.00307 * 180.02562 * 7 6 5 9 9 N 1.34784 * 119.99934 * 0.03403 * 7 6 5 10 10 C 1.46496 * 119.99758 * 179.97438 * 9 7 6 11 11 H 1.09001 * 112.85032 * 336.19438 * 10 9 7 12 12 C 1.53782 * 113.68971 * 107.45966 * 10 9 7 13 13 C 1.53962 * 87.11063 * 89.19569 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 C 1.50700 * 113.66521 * 139.88647 * 13 12 10 16 16 C 1.38218 * 119.97991 * 142.55227 * 15 13 12 17 17 C 1.38247 * 120.04025 * 179.97438 * 16 15 13 18 18 C 1.38298 * 119.99981 * 0.02718 * 17 16 15 19 19 Cl 1.73603 * 120.01917 * 180.02562 * 18 17 16 20 20 C 1.38489 * 119.96362 * 359.97438 * 18 17 16 21 21 Cl 1.73597 * 120.02148 * 180.02562 * 20 18 17 22 22 C 1.38253 * 119.98392 * 322.28178 * 15 13 12 23 23 C 1.53781 * 113.61266 * 204.99541 * 10 9 7 24 24 C 1.36335 * 106.06135 * 0.21383 * 6 5 4 25 25 C 1.50997 * 126.78810 * 179.81477 * 24 6 5 26 26 C 1.53391 * 108.24808 * 164.28288 * 25 24 6 27 27 C 1.53160 * 109.04234 * 48.48229 * 26 25 24 28 28 C 1.53357 * 109.33105 * 290.21882 * 27 26 25 29 29 N 1.35208 * 108.66249 * 359.65076 * 24 6 5 30 30 H 0.96697 * 113.99483 * 300.00366 * 1 2 3 31 31 H 1.08997 * 109.46488 * 240.00268 * 2 1 3 32 32 H 1.48501 * 109.99984 * 178.68265 * 3 2 1 33 33 H 1.48501 * 110.00427 * 300.00173 * 3 2 1 34 34 H 1.07993 * 126.81773 * 359.97438 * 5 4 2 35 35 H 0.97001 * 119.99554 * 359.97438 * 9 7 6 36 36 H 1.08997 * 113.61668 * 203.67120 * 12 10 9 37 37 H 1.08998 * 113.61674 * 334.49629 * 12 10 9 38 38 H 1.08009 * 119.97797 * 0.02562 * 16 15 13 39 39 H 1.08007 * 120.00025 * 179.97438 * 17 16 15 40 40 H 1.07994 * 119.99797 * 0.02562 * 22 15 13 41 41 H 1.09002 * 113.61445 * 25.35018 * 23 10 9 42 42 H 1.09002 * 113.61408 * 156.16749 * 23 10 9 43 43 H 1.09002 * 109.71140 * 283.97146 * 25 24 6 44 44 H 1.09002 * 109.71137 * 44.55228 * 25 24 6 45 45 H 1.09002 * 109.54763 * 168.35366 * 26 25 24 46 46 H 1.09007 * 109.54183 * 288.52906 * 26 25 24 47 47 H 1.08997 * 109.45778 * 50.44454 * 27 26 25 48 48 H 1.08993 * 109.46557 * 170.40749 * 27 26 25 49 49 H 1.09002 * 110.08237 * 291.23773 * 28 27 26 50 50 H 1.08995 * 109.13393 * 170.84536 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 3.0860 -0.4466 1.8677 6 6 3.1558 -1.3783 2.9995 7 6 4.2344 -1.4810 3.9968 8 8 4.1620 -2.3052 4.8882 9 7 5.3018 -0.6614 3.9219 10 6 6.3745 -0.7632 4.9144 11 1 6.0415 -1.2046 5.8538 12 6 7.6677 -1.3878 4.3645 13 6 8.0969 0.0376 3.9717 14 1 7.7715 0.3323 2.9741 15 6 9.5563 0.3200 4.2200 16 6 10.2702 1.0993 3.3292 17 6 11.6089 1.3595 3.5561 18 6 12.2346 0.8396 4.6744 19 17 13.9155 1.1666 4.9601 20 6 11.5193 0.0587 5.5669 21 17 12.3031 -0.5942 6.9716 22 6 10.1788 -0.1959 5.3414 23 6 7.1729 0.5388 5.0942 24 6 2.0221 -2.1330 2.9372 25 6 1.6213 -3.2422 3.8800 26 6 0.1292 -3.5322 3.6738 27 6 -0.1489 -3.6782 2.1747 28 6 -0.0053 -2.3104 1.4962 29 7 1.2886 -1.7252 1.8771 30 1 -0.3932 0.4418 0.7650 31 1 1.7923 -0.5138 -0.8900 32 1 3.5347 1.7702 0.0321 33 1 1.5615 2.4679 -1.2084 34 1 3.8171 0.3015 1.5993 35 1 5.3596 -0.0041 3.2108 36 1 8.2975 -1.8357 5.1332 37 1 7.5058 -2.0479 3.5124 38 1 9.7818 1.5058 2.4559 39 1 12.1663 1.9682 2.8594 40 1 9.6194 -0.8015 6.0390 41 1 6.6117 1.4351 4.8303 42 1 7.6662 0.6182 6.0630 43 1 2.2033 -4.1378 3.6625 44 1 1.7970 -2.9309 4.9097 45 1 -0.1367 -4.4571 4.1857 46 1 -0.4613 -2.7095 4.0771 47 1 0.5619 -4.3810 1.7403 48 1 -1.1629 -4.0502 2.0280 49 1 -0.8120 -1.6491 1.8125 50 1 -0.0420 -2.4424 0.4149 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9750034_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:38:22 Heat of formation + Delta-G solvation = 16.441405 kcal Electronic energy + Delta-G solvation = -34983.331602 eV Core-core repulsion = 30222.846828 eV Total energy + Delta-G solvation = -4760.484774 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.100 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.78002 -41.52514 -40.24882 -38.90758 -37.91184 -37.57396 -37.43264 -36.82390 -34.42212 -33.45042 -31.95362 -31.69805 -31.13851 -29.40075 -26.78165 -26.68057 -26.12254 -24.61538 -24.32977 -23.78256 -22.63776 -21.70289 -21.23018 -20.24721 -19.50642 -18.93576 -18.48882 -17.37743 -17.09769 -16.98942 -16.72336 -16.63664 -16.47124 -15.95732 -15.70599 -15.52951 -15.39639 -15.23346 -15.17892 -15.08498 -14.96506 -14.75064 -14.67414 -14.44334 -14.27185 -13.88469 -13.68403 -13.58177 -13.41040 -13.20476 -12.94959 -12.90564 -12.65666 -12.40415 -12.31769 -12.25037 -12.08678 -12.04094 -11.98703 -11.82020 -11.80088 -11.73396 -11.55187 -11.22720 -10.89504 -10.67366 -10.07586 -9.97435 -9.61011 -9.55243 -9.03699 -4.89480 -0.12257 0.05315 0.72985 0.79602 1.09081 1.19272 1.41085 1.69386 1.82816 2.05484 2.35445 2.38807 2.54138 3.36746 3.44262 3.49435 3.56877 3.59586 3.64242 3.70814 3.72895 3.81568 3.83807 3.93958 4.06520 4.11279 4.16181 4.26268 4.27852 4.34133 4.36512 4.42539 4.46260 4.62824 4.63005 4.73003 4.76278 4.78928 4.80390 4.82179 4.88503 4.89902 4.98474 4.99888 5.03085 5.04273 5.05755 5.16296 5.23295 5.24001 5.42542 5.58614 5.68717 5.73671 6.05267 6.23183 6.63411 6.67906 7.37319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.048 4.048 3 Si 0.796 3.204 4 C -0.010 4.010 5 C -0.170 4.170 6 C -0.255 4.255 7 C 0.591 3.409 8 O -0.587 6.587 9 N -0.698 5.698 10 C 0.118 3.882 11 H 0.085 0.915 12 C -0.146 4.146 13 C -0.063 4.063 14 H 0.123 0.877 15 C -0.051 4.051 16 C -0.094 4.094 17 C -0.099 4.099 18 C -0.053 4.053 19 Cl -0.063 7.063 20 C -0.044 4.044 21 Cl -0.062 7.062 22 C -0.101 4.101 23 C -0.124 4.124 24 C 0.106 3.894 25 C -0.054 4.054 26 C -0.123 4.123 27 C -0.136 4.136 28 C 0.105 3.895 29 N -0.425 5.425 30 H 0.394 0.606 31 H 0.110 0.890 32 H -0.269 1.269 33 H -0.297 1.297 34 H 0.166 0.834 35 H 0.412 0.588 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.108 0.892 49 H 0.105 0.895 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.425 4.030 -3.696 8.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.157 4.157 3 Si 0.699 3.301 4 C -0.119 4.119 5 C -0.194 4.194 6 C -0.264 4.264 7 C 0.382 3.618 8 O -0.469 6.469 9 N -0.349 5.349 10 C 0.012 3.988 11 H 0.103 0.897 12 C -0.184 4.184 13 C -0.082 4.082 14 H 0.141 0.859 15 C -0.051 4.051 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.080 4.080 19 Cl -0.034 7.034 20 C -0.071 4.071 21 Cl -0.033 7.033 22 C -0.120 4.120 23 C -0.162 4.162 24 C -0.013 4.013 25 C -0.092 4.092 26 C -0.161 4.161 27 C -0.174 4.174 28 C -0.014 4.014 29 N -0.100 5.100 30 H 0.244 0.756 31 H 0.128 0.872 32 H -0.194 1.194 33 H -0.224 1.224 34 H 0.183 0.817 35 H 0.249 0.751 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.184 0.816 39 H 0.175 0.825 40 H 0.168 0.832 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.126 0.874 49 H 0.123 0.877 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.025 3.588 -4.021 8.083 hybrid contribution 0.850 -0.726 -0.171 1.131 sum -5.175 2.861 -4.192 7.249 Atomic orbital electron populations 1.86465 1.17084 1.81813 1.50662 1.25018 0.85180 1.11021 0.94522 0.93143 0.78620 0.73788 0.84552 1.20958 0.95929 0.95489 0.99496 1.21933 0.98514 1.02825 0.96112 1.19925 0.98222 1.05959 1.02338 1.17563 0.81322 0.79724 0.83182 1.90744 1.80092 1.38468 1.37612 1.45306 1.19681 1.38369 1.31515 1.21789 0.86337 0.98338 0.92363 0.89692 1.23609 0.96750 0.96228 1.01828 1.21680 0.88897 0.96576 1.01000 0.85949 1.19912 0.96264 0.95795 0.93165 1.21483 0.92727 0.96888 1.00086 1.21335 0.95695 0.99424 0.95307 1.21036 0.86659 1.02307 0.98040 1.98400 1.14701 1.94236 1.96032 1.20939 0.94209 1.00808 0.91157 1.98403 1.80728 1.84711 1.39437 1.21058 0.91314 1.00627 0.98973 1.23384 0.96244 0.97104 0.99458 1.20533 0.91686 0.97963 0.91073 1.20437 0.97040 0.94361 0.97360 1.21697 0.94377 1.03588 0.96403 1.21980 1.04500 0.95493 0.95380 1.22342 0.82241 0.95368 1.01495 1.44039 1.17939 1.26864 1.21197 0.75614 0.87233 1.19441 1.22442 0.81683 0.75074 0.88739 0.91438 0.81622 0.82475 0.83231 0.88805 0.88156 0.90636 0.89897 0.89527 0.90735 0.91790 0.87378 0.87718 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.87 10.68 -148.98 -1.59 1.27 16 2 C -0.05 0.21 2.99 71.23 0.21 0.42 16 3 Si 0.80 -5.14 31.29 68.60 2.15 -2.99 16 4 C -0.01 0.01 6.15 40.99 0.25 0.27 16 5 C -0.17 0.13 9.09 23.64 0.21 0.34 16 6 C -0.25 -1.16 6.28 -19.12 -0.12 -1.28 16 7 C 0.59 4.06 7.81 86.62 0.68 4.73 16 8 O -0.59 -8.35 14.93 -4.10 -0.06 -8.42 16 9 N -0.70 0.27 5.26 -443.45 -2.33 -2.06 16 10 C 0.12 -0.14 4.32 45.52 0.20 0.06 16 11 H 0.08 0.31 7.46 -2.39 -0.02 0.29 16 12 C -0.15 0.38 7.27 31.18 0.23 0.60 16 13 C -0.06 0.42 3.87 -10.95 -0.04 0.37 16 14 H 0.12 -1.22 8.09 -2.39 -0.02 -1.24 16 15 C -0.05 0.19 5.29 -19.87 -0.11 0.09 16 16 C -0.09 0.46 9.71 22.27 0.22 0.67 16 17 C -0.10 0.17 9.83 22.29 0.22 0.39 16 18 C -0.05 -0.15 6.32 22.34 0.14 -0.01 16 19 Cl -0.06 -0.30 27.96 -2.72 -0.08 -0.37 16 20 C -0.04 -0.14 6.32 22.34 0.14 0.00 16 21 Cl -0.06 -0.32 27.96 -2.72 -0.08 -0.39 16 22 C -0.10 0.06 8.38 22.29 0.19 0.25 16 23 C -0.12 0.78 7.28 31.12 0.23 1.00 16 24 C 0.11 0.42 6.57 41.69 0.27 0.70 16 25 C -0.05 -0.17 5.33 30.07 0.16 -0.01 16 26 C -0.12 0.37 5.97 30.78 0.18 0.55 16 27 C -0.14 0.69 5.94 30.77 0.18 0.87 16 28 C 0.11 -0.49 5.32 86.40 0.46 -0.03 16 29 N -0.42 0.07 3.11 -493.22 -1.53 -1.47 16 30 H 0.39 -4.74 8.63 -74.06 -0.64 -5.38 16 31 H 0.11 -0.34 7.96 -2.39 -0.02 -0.36 16 32 H -0.27 1.01 6.77 99.48 0.67 1.69 16 33 H -0.30 -0.30 7.11 99.48 0.71 0.41 16 34 H 0.17 -0.93 6.30 -2.91 -0.02 -0.94 16 35 H 0.41 -2.41 7.83 -92.71 -0.73 -3.14 16 36 H 0.09 -0.24 6.32 -2.39 -0.02 -0.25 16 37 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.17 -1.75 8.06 -2.91 -0.02 -1.77 16 39 H 0.16 -0.81 8.06 -2.91 -0.02 -0.83 16 40 H 0.15 -0.38 6.67 -2.91 -0.02 -0.40 16 41 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 42 H 0.10 -0.60 7.71 -2.39 -0.02 -0.62 16 43 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.08 0.53 7.39 -2.39 -0.02 0.51 16 45 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 46 H 0.07 -0.27 8.12 -2.38 -0.02 -0.29 16 47 H 0.06 -0.17 8.11 -2.39 -0.02 -0.19 16 48 H 0.11 -0.94 8.14 -2.39 -0.02 -0.96 16 49 H 0.10 -0.85 7.94 -2.39 -0.02 -0.86 16 50 H 0.09 -0.38 7.69 -2.39 -0.02 -0.40 16 Total: 0.00 -20.08 428.19 0.03 -20.05 By element: Atomic # 1 Polarization: -15.28 SS G_CDS: -0.35 Total: -15.63 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 3.90 Total: 10.00 kcal Atomic # 7 Polarization: 0.34 SS G_CDS: -3.87 Total: -3.53 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -1.65 Total: -7.14 kcal Atomic # 14 Polarization: -5.14 SS G_CDS: 2.15 Total: -2.99 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.15 Total: -0.77 kcal Total: -20.08 0.03 -20.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9750034_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.494 kcal (2) G-P(sol) polarization free energy of solvation -20.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds