Wall clock time and date at job start Mon Mar 8 2021 04:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35993 * 117.00094 * 2 1 4 4 C 1.39156 * 120.07276 * 180.02562 * 3 2 1 5 5 O 1.35993 * 120.07176 * 359.97438 * 4 3 2 6 6 C 1.42900 * 116.99756 * 179.72731 * 5 4 3 7 7 C 1.50701 * 109.47068 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99708 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00194 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00051 * 179.97438 * 9 7 6 11 11 H 1.08994 * 112.90761 * 336.25322 * 10 9 7 12 12 C 1.53778 * 113.61161 * 107.50472 * 10 9 7 13 13 C 1.53784 * 87.08292 * 89.11486 * 12 10 9 14 14 H 1.09002 * 113.69196 * 270.87157 * 13 12 10 15 15 C 1.50700 * 113.61297 * 139.97747 * 13 12 10 16 16 C 1.38205 * 119.97614 * 142.50446 * 15 13 12 17 17 C 1.38351 * 119.99812 * 180.02562 * 16 15 13 18 18 Cl 1.73598 * 120.01861 * 179.97438 * 17 16 15 19 19 C 1.38440 * 119.96172 * 359.97438 * 17 16 15 20 20 Cl 1.73602 * 120.02284 * 180.02562 * 19 17 16 21 21 C 1.38352 * 119.96063 * 0.02562 * 19 17 16 22 22 C 1.38202 * 119.99853 * 359.97438 * 21 19 17 23 23 C 1.53781 * 87.08048 * 25.43083 * 13 12 10 24 24 C 1.38573 * 119.85265 * 179.72688 * 4 3 2 25 25 C 1.38239 * 119.99872 * 0.26846 * 24 4 3 26 26 N 1.48006 * 119.92702 * 180.02562 * 25 24 4 27 27 O 1.21803 * 119.99402 * 359.97438 * 26 25 24 28 28 O 1.21794 * 120.00318 * 179.97438 * 26 25 24 29 29 C 1.38253 * 120.14942 * 0.02848 * 25 24 4 30 30 C 1.50695 * 119.92837 * 179.97438 * 29 25 24 31 31 O 1.42905 * 109.47219 * 74.99764 * 30 29 25 32 32 Si 1.86296 * 109.47142 * 194.99808 * 30 29 25 33 33 C 1.38248 * 120.14355 * 359.97330 * 29 25 24 34 34 H 1.08995 * 109.47191 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.47059 * 300.00590 * 1 2 3 36 36 H 1.08996 * 109.47204 * 59.99786 * 1 2 3 37 37 H 1.09000 * 109.47195 * 60.00172 * 6 5 4 38 38 H 1.09001 * 109.47416 * 300.00512 * 6 5 4 39 39 H 0.97008 * 119.99751 * 0.02562 * 9 7 6 40 40 H 1.09005 * 113.61632 * 334.56834 * 12 10 9 41 41 H 1.08995 * 113.61180 * 203.66181 * 12 10 9 42 42 H 1.08000 * 120.00631 * 359.74556 * 16 15 13 43 43 H 1.07997 * 119.99615 * 179.97438 * 21 19 17 44 44 H 1.08000 * 119.97672 * 179.97438 * 22 21 19 45 45 H 1.09007 * 113.61455 * 89.11584 * 23 13 12 46 46 H 1.08999 * 113.61500 * 220.01960 * 23 13 12 47 47 H 1.07994 * 119.99660 * 180.25047 * 24 4 3 48 48 H 1.08996 * 109.47127 * 314.99965 * 30 29 25 49 49 H 0.96697 * 114.00076 * 180.02562 * 31 30 29 50 50 H 1.48504 * 110.00100 * 299.99899 * 32 30 29 51 51 H 1.48501 * 110.00113 * 61.31851 * 32 30 29 52 52 H 1.07997 * 119.99649 * 180.02562 * 33 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1795 0.1476 -0.0005 6 6 5.6003 0.3006 -0.0072 7 6 6.2518 -1.0583 -0.0068 8 8 5.5669 -2.0592 -0.0009 9 7 7.5956 -1.1614 -0.0119 10 6 8.2290 -2.4824 -0.0110 11 1 7.5854 -3.2612 0.3980 12 6 8.8720 -2.8581 -1.3564 13 6 10.1549 -2.1838 -0.8421 14 1 10.2116 -1.1193 -1.0695 15 6 11.4146 -2.9275 -1.2043 16 6 12.5569 -2.2270 -1.5427 17 6 13.7135 -2.9093 -1.8758 18 17 15.1484 -2.0300 -2.3016 19 6 13.7258 -4.2936 -1.8694 20 17 15.1763 -5.1513 -2.2865 21 6 12.5813 -4.9932 -1.5304 22 6 11.4269 -4.3100 -1.1979 23 6 9.6493 -2.4841 0.5788 24 6 4.0604 2.5233 -0.0063 25 6 3.3030 3.6798 -0.0058 26 7 3.9716 5.0003 -0.0125 27 8 5.1877 5.0670 -0.0179 28 8 3.3057 6.0200 -0.0126 29 6 1.9225 3.6058 0.0009 30 6 1.1018 4.8696 0.0020 31 8 1.1286 5.4561 -1.3009 32 14 -0.6571 4.4675 0.4658 33 6 1.2933 2.3748 0.0067 34 1 -0.3633 -1.0276 0.0005 35 1 -0.3633 0.5139 0.8900 36 1 -0.3633 0.5138 -0.8899 37 1 5.9104 0.8529 0.8799 38 1 5.9027 0.8479 -0.9000 39 1 8.1435 -0.3608 -0.0155 40 1 8.4246 -2.3507 -2.2111 41 1 8.9738 -3.9329 -1.5066 42 1 12.5456 -1.1471 -1.5516 43 1 12.5901 -6.0731 -1.5256 44 1 10.5336 -4.8564 -0.9337 45 1 9.9635 -3.4567 0.9576 46 1 9.8292 -1.6748 1.2864 47 1 5.1386 2.5839 -0.0108 48 1 1.5168 5.5717 0.7251 49 1 0.6202 6.2754 -1.3740 50 1 -1.2344 3.5110 -0.5125 51 1 -0.7020 3.8862 1.8316 52 1 0.2148 2.3197 0.0115 There are 82 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 82 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9750034_4549636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:39:20 Heat of formation + Delta-G solvation = -48.309009 kcal Electronic energy + Delta-G solvation = -43098.009705 eV Core-core repulsion = 37087.299853 eV Total energy + Delta-G solvation = -6010.709852 eV No. of doubly occupied orbitals = 82 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 483.082 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -43.45685 -42.23380 -41.70213 -40.77205 -39.88781 -39.25197 -38.88548 -37.79473 -37.58163 -37.44545 -37.12727 -34.71533 -32.86557 -32.69592 -32.18808 -31.62601 -29.83870 -28.95639 -27.97056 -26.71550 -26.32058 -25.72635 -24.20113 -24.00252 -23.22027 -22.80765 -22.04622 -20.83020 -20.27507 -19.90822 -19.58439 -18.89088 -18.84061 -18.47176 -18.26269 -18.07825 -17.82917 -17.74630 -17.18324 -16.99815 -16.85665 -16.61708 -16.54186 -16.01988 -15.88189 -15.59836 -15.53467 -15.30918 -15.19599 -14.94309 -14.77788 -14.58915 -14.28500 -14.16807 -13.99614 -13.73842 -13.61524 -13.53230 -13.38978 -13.01209 -12.96294 -12.93782 -12.71854 -12.68462 -12.53769 -12.44501 -12.43490 -12.38639 -12.37687 -12.21357 -11.97152 -11.91894 -11.84874 -11.60097 -11.30175 -11.13167 -10.62951 -10.23921 -10.21266 -10.00545 -9.61853 -9.61080 -5.00629 -1.39871 -0.57071 -0.14642 0.04741 0.11146 0.23285 0.78716 1.15003 1.15730 1.18538 1.34023 1.57272 1.70668 1.77527 1.80472 2.26241 2.33766 2.82033 3.03801 3.19665 3.33239 3.40293 3.44262 3.52564 3.64511 3.67801 3.72720 3.77053 3.80656 3.87496 3.92978 3.94418 3.98621 3.99664 4.07569 4.08478 4.10806 4.17968 4.22877 4.36488 4.50720 4.57423 4.60224 4.61091 4.66964 4.76232 4.80914 4.86897 4.94481 5.00820 5.06535 5.11741 5.23057 5.32971 5.43964 5.56942 5.57709 5.89486 6.35641 6.50136 6.84005 7.04708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.304 6.304 3 C 0.163 3.837 4 C 0.104 3.896 5 O -0.290 6.290 6 C 0.024 3.976 7 C 0.520 3.480 8 O -0.565 6.565 9 N -0.691 5.691 10 C 0.115 3.885 11 H 0.088 0.912 12 C -0.143 4.143 13 C -0.067 4.067 14 H 0.120 0.880 15 C -0.050 4.050 16 C -0.098 4.098 17 C -0.044 4.044 18 Cl -0.061 7.061 19 C -0.053 4.053 20 Cl -0.063 7.063 21 C -0.099 4.099 22 C -0.098 4.098 23 C -0.123 4.123 24 C -0.106 4.106 25 C -0.043 4.043 26 N 0.037 4.963 27 O -0.191 6.191 28 O -0.141 6.141 29 C -0.005 4.005 30 C -0.100 4.100 31 O -0.553 6.553 32 Si 0.777 3.223 33 C -0.188 4.188 34 H 0.132 0.868 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.422 0.578 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.192 0.808 48 H 0.101 0.899 49 H 0.408 0.592 50 H -0.269 1.269 51 H -0.277 1.277 52 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 1.983 2.600 6.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.216 6.216 3 C 0.114 3.886 4 C 0.057 3.943 5 O -0.202 6.202 6 C -0.054 4.054 7 C 0.306 3.694 8 O -0.443 6.443 9 N -0.345 5.345 10 C 0.009 3.991 11 H 0.106 0.894 12 C -0.181 4.181 13 C -0.085 4.085 14 H 0.138 0.862 15 C -0.051 4.051 16 C -0.117 4.117 17 C -0.072 4.072 18 Cl -0.032 7.032 19 C -0.081 4.081 20 Cl -0.034 7.034 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.161 4.161 24 C -0.126 4.126 25 C -0.127 4.127 26 N 0.553 4.447 27 O -0.399 6.399 28 O -0.361 6.361 29 C -0.006 4.006 30 C -0.208 4.208 31 O -0.364 6.364 32 Si 0.679 3.321 33 C -0.206 4.206 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.260 0.740 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.174 0.826 43 H 0.173 0.827 44 H 0.178 0.822 45 H 0.124 0.876 46 H 0.111 0.889 47 H 0.209 0.791 48 H 0.118 0.882 49 H 0.260 0.740 50 H -0.195 1.195 51 H -0.203 1.203 52 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.088 -0.920 2.634 6.697 hybrid contribution 1.592 0.658 -0.309 1.751 sum -4.496 -0.262 2.325 5.068 Atomic orbital electron populations 1.23675 0.75309 1.07148 1.02855 1.86311 1.24200 1.24590 1.86496 1.18666 0.89634 0.85969 0.94296 1.17860 0.88304 0.85496 1.02643 1.86299 1.18762 1.26521 1.88654 1.22981 0.78493 0.96400 1.07516 1.20239 0.83121 0.90229 0.75802 1.90790 1.63942 1.39761 1.49774 1.45341 1.04911 1.09932 1.74352 1.21885 0.94288 0.85038 0.97861 0.89390 1.23599 0.94845 1.02361 0.97308 1.21691 0.89449 1.00366 0.96989 0.86184 1.19911 0.94646 0.93657 0.96869 1.21177 0.89995 1.01609 0.98919 1.20992 0.90464 0.90638 1.05084 1.98405 1.37685 1.75542 1.91585 1.21041 0.90347 0.90888 1.05780 1.98403 1.36470 1.76728 1.91848 1.21301 0.90510 1.01679 0.98317 1.21387 0.98275 0.93924 0.98041 1.23409 0.92127 1.04753 0.95778 1.20976 1.03264 0.87893 1.00436 1.20542 0.92374 0.82797 1.17027 1.43445 1.00857 1.02987 0.97454 1.94521 0.96137 1.93942 1.55251 1.94480 1.64628 1.24849 1.52162 1.19318 0.90916 0.96130 0.94280 1.25221 1.11013 0.93426 0.91177 1.86384 1.77657 1.45441 1.26876 0.93524 0.75793 0.85917 0.76911 1.21045 1.01301 0.89559 1.08728 0.85034 0.90906 0.90936 0.85075 0.85295 0.73972 0.91049 0.87951 0.82588 0.82717 0.82168 0.87614 0.88884 0.79100 0.88151 0.73971 1.19493 1.20293 0.81454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -1.42 10.28 -79.60 -0.82 -2.24 16 3 C 0.16 0.67 6.70 22.57 0.15 0.82 16 4 C 0.10 0.33 6.70 22.57 0.15 0.48 16 5 O -0.29 -1.27 9.45 -67.05 -0.63 -1.91 16 6 C 0.02 -0.11 5.22 71.24 0.37 0.26 16 7 C 0.52 0.02 7.91 87.66 0.69 0.71 16 8 O -0.57 -6.54 16.10 16.00 0.26 -6.28 16 9 N -0.69 5.15 5.26 -440.04 -2.32 2.84 16 10 C 0.11 -0.72 4.32 45.52 0.20 -0.52 16 11 H 0.09 -0.10 7.47 -2.39 -0.02 -0.12 16 12 C -0.14 1.06 7.25 31.12 0.23 1.29 16 13 C -0.07 0.66 3.86 -11.01 -0.04 0.62 16 14 H 0.12 -1.54 8.09 -2.39 -0.02 -1.56 16 15 C -0.05 0.30 5.29 -19.87 -0.11 0.19 16 16 C -0.10 0.30 9.49 22.29 0.21 0.51 16 17 C -0.04 -0.07 6.32 22.34 0.14 0.07 16 18 Cl -0.06 -0.22 27.96 -2.72 -0.08 -0.30 16 19 C -0.05 -0.10 6.32 22.35 0.14 0.04 16 20 Cl -0.06 -0.26 27.96 -2.72 -0.08 -0.34 16 21 C -0.10 0.23 9.83 22.29 0.22 0.45 16 22 C -0.10 0.56 8.61 22.27 0.19 0.75 16 23 C -0.12 1.27 7.29 31.12 0.23 1.50 16 24 C -0.11 -0.09 8.54 22.35 0.19 0.10 16 25 C -0.04 -0.22 6.85 36.38 0.25 0.03 16 26 N 0.04 0.31 4.45 -46.46 -0.21 0.10 16 27 O -0.19 -1.76 18.44 18.88 0.35 -1.41 16 28 O -0.14 -1.26 14.62 25.11 0.37 -0.89 16 29 C 0.00 -0.02 5.29 -19.86 -0.11 -0.12 16 30 C -0.10 0.05 1.73 71.23 0.12 0.17 16 31 O -0.55 -0.07 11.77 -129.61 -1.53 -1.59 16 32 Si 0.78 -4.30 30.19 68.60 2.07 -2.23 16 33 C -0.19 -0.39 7.65 22.35 0.17 -0.22 16 34 H 0.13 -0.92 8.14 -2.39 -0.02 -0.94 16 35 H 0.07 -0.44 7.65 -2.39 -0.02 -0.46 16 36 H 0.07 -0.39 7.68 -2.39 -0.02 -0.41 16 37 H 0.13 -1.46 7.66 -2.39 -0.02 -1.48 16 38 H 0.13 -1.38 7.66 -2.39 -0.02 -1.40 16 39 H 0.42 -6.17 8.70 -92.70 -0.81 -6.98 16 40 H 0.07 -0.38 8.14 -2.38 -0.02 -0.40 16 41 H 0.10 -0.83 6.31 -2.39 -0.02 -0.84 16 42 H 0.16 -1.02 8.05 -2.91 -0.02 -1.04 16 43 H 0.16 -0.81 8.06 -2.91 -0.02 -0.84 16 44 H 0.16 -1.62 6.66 -2.91 -0.02 -1.64 16 45 H 0.11 -1.11 7.72 -2.38 -0.02 -1.12 16 46 H 0.09 -1.11 8.14 -2.39 -0.02 -1.13 16 47 H 0.19 -1.00 5.84 -2.91 -0.02 -1.01 16 48 H 0.10 -0.09 6.07 -2.39 -0.01 -0.10 16 49 H 0.41 -4.03 8.74 -74.06 -0.65 -4.68 16 50 H -0.27 0.57 6.74 99.48 0.67 1.25 16 51 H -0.28 0.31 7.11 99.48 0.71 1.01 16 52 H 0.17 -0.20 3.13 -2.91 -0.01 -0.21 16 Total: 0.00 -31.65 465.26 1.52 -30.13 By element: Atomic # 1 Polarization: -23.72 SS G_CDS: -0.39 Total: -24.10 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 4.52 Total: 8.23 kcal Atomic # 7 Polarization: 5.46 SS G_CDS: -2.52 Total: 2.94 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -2.00 Total: -14.32 kcal Atomic # 14 Polarization: -4.30 SS G_CDS: 2.07 Total: -2.23 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.15 Total: -0.64 kcal Total: -31.65 1.52 -30.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9750034_4549636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.181 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds