Wall clock time and date at job start Mon Mar 8 2021 04:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86300 * 109.47218 * 2 1 4 4 C 1.50697 * 109.47299 * 239.99648 * 2 1 3 5 5 C 1.32770 * 124.71519 * 300.00186 * 4 2 1 6 6 C 1.44424 * 113.08847 * 179.97438 * 5 4 2 7 7 C 1.47190 * 123.46536 * 179.97438 * 6 5 4 8 8 O 1.21639 * 119.99614 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00124 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00150 * 180.02562 * 9 7 6 11 11 H 1.09005 * 112.84772 * 23.80489 * 10 9 7 12 12 C 1.53781 * 113.61346 * 154.99446 * 10 9 7 13 13 C 1.53788 * 87.07832 * 89.12091 * 12 10 9 14 14 H 1.09000 * 113.60896 * 270.79859 * 13 12 10 15 15 C 1.50692 * 113.61290 * 139.97904 * 13 12 10 16 16 C 1.38224 * 119.98630 * 299.97483 * 15 13 12 17 17 C 1.38239 * 120.04028 * 180.02562 * 16 15 13 18 18 C 1.38305 * 120.00472 * 359.97438 * 17 16 15 19 19 Cl 1.73595 * 120.02354 * 180.02562 * 18 17 16 20 20 C 1.38489 * 119.95773 * 359.71004 * 18 17 16 21 21 Cl 1.73604 * 120.02167 * 180.29678 * 20 18 17 22 22 C 1.38256 * 119.97923 * 120.00218 * 15 13 12 23 23 C 1.53775 * 113.61479 * 252.49570 * 10 9 7 24 24 C 1.36009 * 113.07550 * 0.25049 * 6 5 4 25 25 S 1.70453 * 110.81707 * 359.61976 * 24 6 5 26 26 H 0.96703 * 113.99777 * 60.00332 * 1 2 3 27 27 H 1.09006 * 109.46654 * 120.00026 * 2 1 3 28 28 H 1.48503 * 109.99805 * 298.67812 * 3 2 1 29 29 H 1.48499 * 110.00049 * 59.99644 * 3 2 1 30 30 H 1.08004 * 123.45576 * 359.97438 * 5 4 2 31 31 H 0.97001 * 120.00197 * 359.97438 * 9 7 6 32 32 H 1.08994 * 113.61895 * 334.56913 * 12 10 9 33 33 H 1.08996 * 113.68697 * 203.67474 * 12 10 9 34 34 H 1.08005 * 119.97313 * 359.97438 * 16 15 13 35 35 H 1.08000 * 119.99872 * 179.97438 * 17 16 15 36 36 H 1.08002 * 119.99676 * 359.97438 * 22 15 13 37 37 H 1.09004 * 113.61539 * 156.33343 * 23 10 9 38 38 H 1.09003 * 113.61551 * 25.43356 * 23 10 9 39 39 H 1.08005 * 124.59227 * 179.73335 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6690 -1.9764 -1.5326 6 6 2.2773 -2.4006 -2.7719 7 6 2.1353 -3.7581 -3.3229 8 8 1.4771 -4.5901 -2.7277 9 7 2.7344 -4.0791 -4.4866 10 6 2.5926 -5.4301 -5.0353 11 1 1.6975 -5.9399 -4.6788 12 6 2.7736 -5.4975 -6.5609 13 6 4.2739 -5.7056 -6.2947 14 1 4.8392 -4.7758 -6.2323 15 6 4.9139 -6.7196 -7.2075 16 6 4.4569 -8.0241 -7.2193 17 6 5.0435 -8.9553 -8.0557 18 6 6.0880 -8.5819 -8.8819 19 17 6.8246 -9.7508 -9.9329 20 6 6.5416 -7.2735 -8.8748 21 17 7.8475 -6.8012 -9.9167 22 6 5.9583 -6.3447 -8.0322 23 6 3.8713 -6.2771 -4.9250 24 6 2.9998 -1.4185 -3.3747 25 16 2.9441 0.0208 -2.4632 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5139 0.8901 28 1 1.5880 2.4585 -1.2243 29 1 1.5615 2.4679 1.2084 30 1 1.0628 -2.6226 -0.9151 31 1 3.2589 -3.4155 -4.9614 32 1 2.5461 -4.5607 -7.0695 33 1 2.2885 -6.3579 -7.0218 34 1 3.6415 -8.3160 -6.5740 35 1 4.6862 -9.9744 -8.0641 36 1 6.3149 -5.3253 -8.0225 37 1 3.6861 -7.3512 -4.9374 38 1 4.5301 -5.9696 -4.1128 39 1 3.5347 -1.5343 -4.3058 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9750034_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:40:41 Heat of formation + Delta-G solvation = 9.451118 kcal Electronic energy + Delta-G solvation = -26269.222602 eV Core-core repulsion = 22129.625721 eV Total energy + Delta-G solvation = -4139.596881 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.014 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.72573 -40.68355 -39.35813 -38.69224 -37.56743 -37.44936 -37.14529 -34.64621 -32.26108 -31.89894 -31.17926 -26.99848 -26.73628 -26.68970 -25.30712 -24.06261 -22.80794 -22.17846 -20.59397 -20.27833 -18.90058 -18.59913 -18.08175 -17.68954 -17.16901 -16.81717 -16.57500 -16.43303 -16.07562 -15.78196 -15.62398 -15.37511 -15.18221 -14.91405 -14.63289 -14.39617 -14.04881 -13.89317 -13.64052 -13.53914 -13.51583 -13.33099 -12.94626 -12.92709 -12.63739 -12.42876 -12.41596 -12.35594 -11.95700 -11.88783 -11.79414 -11.57980 -11.27563 -11.05762 -10.76690 -10.19847 -9.99127 -9.95930 -9.60345 -9.43116 -5.04633 -0.32367 -0.13193 0.06244 0.40908 0.71492 0.80084 0.82480 1.19747 1.23392 1.56523 1.91369 2.06330 2.25570 2.35459 3.30591 3.42233 3.53400 3.60254 3.67959 3.69510 3.88921 3.93681 3.99703 4.00560 4.09835 4.19430 4.29752 4.38171 4.50948 4.63489 4.68452 4.72550 4.77681 4.83630 4.88735 4.95917 5.02270 5.02549 5.08358 5.14632 5.18709 5.37968 5.58823 5.60594 6.40632 6.46802 7.15805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.047 4.047 3 Si 0.730 3.270 4 C -0.247 4.247 5 C -0.076 4.076 6 C -0.183 4.183 7 C 0.578 3.422 8 O -0.583 6.583 9 N -0.693 5.693 10 C 0.113 3.887 11 H 0.086 0.914 12 C -0.123 4.123 13 C -0.065 4.065 14 H 0.120 0.880 15 C -0.050 4.050 16 C -0.099 4.099 17 C -0.099 4.099 18 C -0.053 4.053 19 Cl -0.063 7.063 20 C -0.044 4.044 21 Cl -0.061 7.061 22 C -0.097 4.097 23 C -0.142 4.142 24 C -0.188 4.188 25 S 0.250 5.750 26 H 0.388 0.612 27 H 0.129 0.871 28 H -0.251 1.251 29 H -0.277 1.277 30 H 0.131 0.869 31 H 0.415 0.585 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.160 0.840 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 5.240 -1.654 6.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.157 4.157 3 Si 0.631 3.369 4 C -0.364 4.364 5 C -0.106 4.106 6 C -0.201 4.201 7 C 0.365 3.635 8 O -0.464 6.464 9 N -0.344 5.344 10 C 0.007 3.993 11 H 0.104 0.896 12 C -0.161 4.161 13 C -0.083 4.083 14 H 0.138 0.862 15 C -0.051 4.051 16 C -0.116 4.116 17 C -0.118 4.118 18 C -0.080 4.080 19 Cl -0.034 7.034 20 C -0.072 4.072 21 Cl -0.032 7.032 22 C -0.116 4.116 23 C -0.180 4.180 24 C -0.327 4.327 25 S 0.517 5.483 26 H 0.238 0.762 27 H 0.147 0.853 28 H -0.176 1.176 29 H -0.203 1.203 30 H 0.149 0.851 31 H 0.253 0.747 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.175 0.825 37 H 0.121 0.879 38 H 0.089 0.911 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.918 6.553 -1.098 7.257 hybrid contribution -1.262 -1.889 -0.689 2.374 sum 1.656 4.664 -1.787 5.262 Atomic orbital electron populations 1.86614 1.18236 1.80379 1.50107 1.24728 0.83266 1.11326 0.96417 0.94476 0.90289 0.72212 0.79945 1.24821 1.08866 0.98732 1.03954 1.20981 0.99161 0.94992 0.95446 1.20079 1.06696 0.94779 0.98546 1.17888 0.78154 0.86685 0.80726 1.90800 1.42673 1.51984 1.60970 1.45363 1.52644 1.13847 1.22595 1.21889 0.99193 0.82980 0.95233 0.89579 1.23406 0.94268 1.04652 0.93799 1.21658 0.95800 0.97611 0.93215 0.86242 1.19904 0.94392 0.94911 0.95858 1.21385 1.00176 0.92052 0.98034 1.21294 0.93884 1.02029 0.94603 1.21037 0.99077 0.89577 0.98358 1.98402 1.82075 1.57841 1.65114 1.20987 0.94712 0.93439 0.98026 1.98404 1.47209 1.91941 1.65596 1.21172 0.95991 0.99884 0.94537 1.23589 0.96809 1.00960 0.96672 1.26195 1.02523 0.98082 1.05869 1.82986 1.44493 1.09828 1.11016 0.76224 0.85301 1.17632 1.20319 0.85120 0.74672 0.89076 0.87603 0.82262 0.82738 0.82485 0.87928 0.91144 0.77668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.31 12.85 -148.98 -1.91 -3.22 16 2 C -0.05 0.07 2.95 71.23 0.21 0.28 16 3 Si 0.73 -3.06 30.91 68.60 2.12 -0.94 16 4 C -0.25 0.30 5.68 24.51 0.14 0.44 16 5 C -0.08 -0.27 9.91 22.67 0.22 -0.04 16 6 C -0.18 -0.14 5.98 -19.87 -0.12 -0.26 16 7 C 0.58 2.41 7.79 86.60 0.67 3.09 16 8 O -0.58 -8.19 16.40 -4.16 -0.07 -8.26 16 9 N -0.69 2.89 5.23 -443.52 -2.32 0.57 16 10 C 0.11 -0.49 4.32 45.52 0.20 -0.29 16 11 H 0.09 0.08 7.46 -2.38 -0.02 0.06 16 12 C -0.12 1.13 7.29 31.12 0.23 1.36 16 13 C -0.06 0.60 3.86 -11.01 -0.04 0.56 16 14 H 0.12 -1.48 8.09 -2.39 -0.02 -1.50 16 15 C -0.05 0.29 5.29 -19.87 -0.11 0.18 16 16 C -0.10 0.54 8.61 22.27 0.19 0.73 16 17 C -0.10 0.23 9.83 22.29 0.22 0.45 16 18 C -0.05 -0.09 6.32 22.35 0.14 0.05 16 19 Cl -0.06 -0.25 27.96 -2.72 -0.08 -0.32 16 20 C -0.04 -0.06 6.32 22.35 0.14 0.09 16 21 Cl -0.06 -0.19 27.96 -2.72 -0.08 -0.26 16 22 C -0.10 0.32 9.49 22.29 0.21 0.54 16 23 C -0.14 0.89 7.25 31.12 0.23 1.12 16 24 C -0.19 1.28 10.38 67.30 0.70 1.97 16 25 S 0.25 -1.71 20.18 -56.49 -1.14 -2.85 16 26 H 0.39 -1.47 8.70 -74.06 -0.64 -2.12 16 27 H 0.13 -0.30 7.96 -2.38 -0.02 -0.32 16 28 H -0.25 0.54 7.11 99.48 0.71 1.24 16 29 H -0.28 -0.84 7.11 99.48 0.71 -0.14 16 30 H 0.13 1.03 8.06 -2.91 -0.02 1.00 16 31 H 0.42 -4.65 7.20 -92.71 -0.67 -5.31 16 32 H 0.09 -0.98 8.14 -2.39 -0.02 -1.00 16 33 H 0.11 -1.01 7.72 -2.39 -0.02 -1.03 16 34 H 0.16 -1.54 6.65 -2.91 -0.02 -1.56 16 35 H 0.15 -0.80 8.06 -2.91 -0.02 -0.82 16 36 H 0.16 -1.11 8.05 -2.91 -0.02 -1.14 16 37 H 0.10 -0.74 6.31 -2.38 -0.02 -0.75 16 38 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.21 -3.03 7.01 -2.91 -0.02 -3.05 16 Total: 0.00 -21.38 374.55 -0.38 -21.76 By element: Atomic # 1 Polarization: -16.59 SS G_CDS: -0.14 Total: -16.72 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 3.24 Total: 10.24 kcal Atomic # 7 Polarization: 2.89 SS G_CDS: -2.32 Total: 0.57 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -1.98 Total: -11.48 kcal Atomic # 14 Polarization: -3.06 SS G_CDS: 2.12 Total: -0.94 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -1.14 Total: -2.85 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.15 Total: -0.59 kcal Total: -21.38 -0.38 -21.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9750034_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.208 kcal (2) G-P(sol) polarization free energy of solvation -21.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds