Wall clock time and date at job start Mon Mar 8 2021 04:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86304 * 109.47341 * 2 1 4 4 C 1.50701 * 109.46869 * 119.99795 * 2 1 3 5 5 C 1.34238 * 126.50414 * 255.03740 * 4 2 1 6 6 N 1.36831 * 109.93734 * 179.97438 * 5 4 2 7 7 C 1.46497 * 125.05946 * 180.27049 * 6 5 4 8 8 C 1.50706 * 109.46888 * 264.69854 * 7 6 5 9 9 O 1.21276 * 120.00049 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99784 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99735 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.85146 * 25.33495 * 11 10 8 13 13 C 1.53786 * 113.61378 * 156.53074 * 11 10 8 14 14 C 1.53774 * 87.08427 * 89.11905 * 13 11 10 15 15 H 1.09005 * 113.61315 * 270.80359 * 14 13 11 16 16 C 1.50694 * 113.61860 * 139.98399 * 14 13 11 17 17 C 1.38204 * 119.98401 * 119.99862 * 16 14 13 18 18 C 1.38342 * 119.99811 * 179.97438 * 17 16 14 19 19 Cl 1.73605 * 120.01474 * 179.97438 * 18 17 16 20 20 C 1.38444 * 119.96675 * 359.97438 * 18 17 16 21 21 Cl 1.73599 * 120.02033 * 180.02562 * 20 18 17 22 22 C 1.38342 * 119.95706 * 0.02562 * 20 18 17 23 23 C 1.38201 * 120.00284 * 359.74316 * 22 20 18 24 24 C 1.53788 * 113.61774 * 254.13539 * 11 10 8 25 25 C 1.37695 * 109.87616 * 0.02562 * 6 5 4 26 26 C 1.39078 * 133.51168 * 180.02562 * 25 6 5 27 27 C 1.37791 * 119.77620 * 179.97438 * 26 25 6 28 28 C 1.38786 * 120.66938 * 0.02562 * 27 26 25 29 29 C 1.36658 * 120.52498 * 359.95710 * 28 27 26 30 30 C 1.39591 * 119.76648 * 0.04442 * 29 28 27 31 31 H 0.96698 * 114.00001 * 300.00562 * 1 2 3 32 32 H 1.08994 * 109.47069 * 239.99838 * 2 1 3 33 33 H 1.48495 * 110.00115 * 178.67799 * 3 2 1 34 34 H 1.48493 * 110.00164 * 300.00015 * 3 2 1 35 35 H 1.07994 * 125.02768 * 359.97438 * 5 4 2 36 36 H 1.09002 * 109.47359 * 24.69466 * 7 6 5 37 37 H 1.08997 * 109.47204 * 144.70083 * 7 6 5 38 38 H 0.96998 * 120.00549 * 0.02562 * 10 8 7 39 39 H 1.09004 * 113.61451 * 203.66888 * 13 11 10 40 40 H 1.09000 * 113.61381 * 334.47703 * 13 11 10 41 41 H 1.07996 * 119.99745 * 359.95693 * 17 16 14 42 42 H 1.08004 * 119.99700 * 179.97438 * 22 20 18 43 43 H 1.07999 * 119.98553 * 180.27675 * 23 22 20 44 44 H 1.09000 * 113.60953 * 25.43026 * 24 11 10 45 45 H 1.08995 * 113.61498 * 156.33489 * 24 11 10 46 46 H 1.08001 * 120.11439 * 359.95196 * 26 25 6 47 47 H 1.08001 * 119.66625 * 179.97438 * 27 26 25 48 48 H 1.08003 * 119.73668 * 179.97438 * 28 27 26 49 49 H 1.08006 * 120.11944 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.4601 -0.1376 2.3233 6 7 2.8017 -1.0990 3.2351 7 6 3.4005 -0.8400 4.5467 8 6 4.8992 -0.9646 4.4481 9 8 5.4160 -1.2428 3.3868 10 7 5.6650 -0.7678 5.5395 11 6 7.1218 -0.8895 5.4438 12 1 7.4969 -0.7031 4.4375 13 6 7.8778 -0.1149 6.5363 14 6 7.7750 -1.3847 7.3975 15 1 6.8704 -1.4289 8.0040 16 6 9.0238 -1.6813 8.1871 17 6 8.9709 -1.7404 9.5668 18 6 10.1171 -2.0132 10.2919 19 17 10.0512 -2.0869 12.0252 20 6 11.3166 -2.2275 9.6347 21 17 12.7555 -2.5706 10.5431 22 6 11.3677 -2.1680 8.2535 23 6 10.2208 -1.9000 7.5304 24 6 7.6757 -2.1757 6.0793 25 6 2.4937 -2.3457 2.7384 26 6 2.6285 -3.6362 3.2393 27 6 2.2154 -4.7107 2.4822 28 6 1.6657 -4.5195 1.2222 29 6 1.5238 -3.2602 0.7108 30 6 1.9355 -2.1571 1.4606 31 1 -0.3933 0.4418 0.7650 32 1 1.7923 -0.5138 -0.8899 33 1 3.5346 1.7703 0.0322 34 1 1.5616 2.4679 -1.2084 35 1 2.5958 0.9248 2.4623 36 1 3.1404 0.1672 4.8725 37 1 3.0225 -1.5643 5.2682 38 1 5.2516 -0.5464 6.3886 39 1 8.9000 0.1439 6.2601 40 1 7.3202 0.7320 6.9362 41 1 8.0349 -1.5733 10.0789 42 1 12.3032 -2.3346 7.7401 43 1 10.2602 -1.8580 6.4519 44 1 6.9544 -2.9923 6.1118 45 1 8.6427 -2.4793 5.6785 46 1 3.0557 -3.7955 4.2183 47 1 2.3213 -5.7121 2.8727 48 1 1.3474 -5.3726 0.6415 49 1 1.0947 -3.1189 -0.2703 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9750034_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:40:58 Heat of formation + Delta-G solvation = 47.871160 kcal Electronic energy + Delta-G solvation = -35173.944542 eV Core-core repulsion = 30313.908003 eV Total energy + Delta-G solvation = -4860.036539 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 431.084 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.52633 -41.59839 -40.46572 -39.11010 -38.08259 -37.60501 -37.57898 -37.40703 -34.66485 -33.95674 -32.19758 -31.71380 -31.22205 -30.22235 -28.93187 -26.70741 -26.42783 -25.55547 -24.12086 -23.77109 -23.01036 -22.55576 -21.79727 -20.65428 -20.22078 -18.79461 -18.50385 -18.28457 -17.69156 -17.32317 -17.12368 -16.75228 -16.57808 -16.42185 -16.28204 -16.01687 -15.72190 -15.52010 -15.30314 -15.23725 -15.00700 -14.85024 -14.70028 -14.61834 -14.34420 -14.05331 -13.83721 -13.61677 -13.57321 -13.41543 -13.11755 -12.95838 -12.93495 -12.70709 -12.57567 -12.41728 -12.37370 -12.25649 -12.11534 -11.97001 -11.84528 -11.81291 -11.58930 -11.28068 -11.13529 -10.54359 -10.30192 -10.12930 -10.00468 -9.61433 -9.14859 -8.61442 -5.04880 -0.14723 0.04745 0.15023 0.63793 0.78876 1.18617 1.35033 1.44046 1.47840 1.65166 1.76513 2.00890 2.21431 2.33698 2.95199 3.42328 3.52244 3.58814 3.64364 3.67345 3.69679 3.72386 3.78154 3.89385 3.91915 3.98389 4.06570 4.08808 4.18122 4.19684 4.22289 4.30992 4.37140 4.48983 4.56780 4.62457 4.67497 4.72406 4.76533 4.79301 4.82483 4.88044 4.89399 4.96274 5.01352 5.06522 5.13868 5.14480 5.36672 5.50887 5.57440 5.60286 5.66374 5.73727 5.76045 6.21195 6.25261 6.50943 6.89793 7.17837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.042 4.042 3 Si 0.803 3.197 4 C -0.227 4.227 5 C 0.081 3.919 6 N -0.466 5.466 7 C 0.087 3.913 8 C 0.493 3.507 9 O -0.574 6.574 10 N -0.693 5.693 11 C 0.116 3.884 12 H 0.079 0.921 13 C -0.122 4.122 14 C -0.064 4.064 15 H 0.123 0.877 16 C -0.051 4.051 17 C -0.097 4.097 18 C -0.044 4.044 19 Cl -0.060 7.060 20 C -0.053 4.053 21 Cl -0.064 7.064 22 C -0.101 4.101 23 C -0.100 4.100 24 C -0.144 4.144 25 C 0.092 3.908 26 C -0.132 4.132 27 C -0.109 4.109 28 C -0.154 4.154 29 C -0.092 4.092 30 C -0.118 4.118 31 H 0.393 0.607 32 H 0.087 0.913 33 H -0.294 1.294 34 H -0.299 1.299 35 H 0.209 0.791 36 H 0.170 0.830 37 H 0.145 0.855 38 H 0.422 0.578 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.159 0.841 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.135 0.865 47 H 0.145 0.855 48 H 0.134 0.866 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.654 4.790 6.511 8.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.151 4.151 3 Si 0.708 3.292 4 C -0.234 4.234 5 C -0.044 4.044 6 N -0.148 5.148 7 C -0.037 4.037 8 C 0.279 3.721 9 O -0.452 6.452 10 N -0.347 5.347 11 C 0.010 3.990 12 H 0.097 0.903 13 C -0.160 4.160 14 C -0.082 4.082 15 H 0.141 0.859 16 C -0.051 4.051 17 C -0.115 4.115 18 C -0.072 4.072 19 Cl -0.031 7.031 20 C -0.081 4.081 21 Cl -0.035 7.035 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.183 4.183 25 C -0.014 4.014 26 C -0.152 4.152 27 C -0.128 4.128 28 C -0.173 4.173 29 C -0.110 4.110 30 C -0.122 4.122 31 H 0.243 0.757 32 H 0.104 0.896 33 H -0.221 1.221 34 H -0.227 1.227 35 H 0.226 0.774 36 H 0.187 0.813 37 H 0.162 0.838 38 H 0.260 0.740 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.177 0.823 42 H 0.171 0.829 43 H 0.175 0.825 44 H 0.088 0.912 45 H 0.114 0.886 46 H 0.152 0.848 47 H 0.162 0.838 48 H 0.152 0.848 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.469 4.917 5.355 7.417 hybrid contribution 0.560 -1.093 0.153 1.238 sum -0.910 3.824 5.507 6.766 Atomic orbital electron populations 1.86452 1.17798 1.82387 1.50220 1.24582 0.84685 1.10439 0.95399 0.94144 0.76652 0.73440 0.84962 1.20787 1.12074 0.91889 0.98690 1.22069 0.98633 0.95371 0.88330 1.43443 1.52044 1.03712 1.15623 1.22032 0.88457 1.09423 0.83789 1.21498 0.90699 0.76104 0.83802 1.90815 1.75518 1.48356 1.30478 1.45475 1.05993 1.70871 1.12331 1.21794 0.80203 0.97179 0.99791 0.90251 1.23372 1.01863 0.96731 0.94032 1.21719 0.95235 0.96989 0.94228 0.85902 1.19935 0.95844 0.96995 0.92349 1.21179 0.97193 0.99384 0.93760 1.20999 0.94581 1.05919 0.85658 1.98406 1.98657 1.96723 1.09338 1.21035 0.87484 1.06272 0.93282 1.98403 1.36987 1.93403 1.74668 1.21286 1.01063 0.99146 0.90425 1.21372 0.90950 0.97784 1.01654 1.23623 1.02325 0.97119 0.95189 1.18372 1.01534 0.87128 0.94333 1.20244 1.04467 0.89067 1.01424 1.21121 0.98330 0.99081 0.94311 1.20900 1.02437 0.96942 0.97046 1.20434 0.99344 0.91880 0.99374 1.19373 1.03998 0.93907 0.94937 0.75690 0.89567 1.22111 1.22698 0.77441 0.81276 0.83782 0.73961 0.88161 0.88565 0.82342 0.82883 0.82501 0.91198 0.88628 0.84764 0.83768 0.84800 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.13 12.88 -148.98 -1.92 -4.05 16 2 C -0.04 -0.16 3.06 71.24 0.22 0.06 16 3 Si 0.80 -0.87 30.76 68.60 2.11 1.24 16 4 C -0.23 -1.12 5.57 -18.62 -0.10 -1.22 16 5 C 0.08 -0.07 9.89 83.00 0.82 0.75 16 6 N -0.47 0.15 2.27 -520.00 -1.18 -1.03 16 7 C 0.09 -0.87 6.48 85.64 0.56 -0.32 16 8 C 0.49 -1.87 7.90 87.66 0.69 -1.18 16 9 O -0.57 -5.12 16.04 -3.02 -0.05 -5.17 16 10 N -0.69 7.29 5.26 -440.02 -2.32 4.97 16 11 C 0.12 -0.89 4.30 45.52 0.20 -0.69 16 12 H 0.08 -0.11 7.50 -2.39 -0.02 -0.13 16 13 C -0.12 1.43 7.29 31.12 0.23 1.66 16 14 C -0.06 0.72 3.87 -10.92 -0.04 0.67 16 15 H 0.12 -1.82 8.09 -2.38 -0.02 -1.84 16 16 C -0.05 0.35 5.29 -19.87 -0.11 0.24 16 17 C -0.10 0.42 9.49 22.29 0.21 0.63 16 18 C -0.04 -0.03 6.32 22.34 0.14 0.12 16 19 Cl -0.06 -0.15 27.96 -2.72 -0.08 -0.23 16 20 C -0.05 -0.07 6.32 22.34 0.14 0.07 16 21 Cl -0.06 -0.23 27.96 -2.72 -0.08 -0.31 16 22 C -0.10 0.26 9.83 22.29 0.22 0.48 16 23 C -0.10 0.60 8.62 22.27 0.19 0.79 16 24 C -0.14 1.17 7.27 31.22 0.23 1.39 16 25 C 0.09 0.56 6.80 39.03 0.27 0.83 16 26 C -0.13 -0.57 10.00 22.37 0.22 -0.35 16 27 C -0.11 -0.50 10.01 22.30 0.22 -0.28 16 28 C -0.15 -1.05 9.97 22.03 0.22 -0.83 16 29 C -0.09 -0.91 10.05 22.23 0.22 -0.68 16 30 C -0.12 -1.13 6.35 -20.20 -0.13 -1.26 16 31 H 0.39 -2.16 8.70 -74.06 -0.64 -2.80 16 32 H 0.09 0.65 7.96 -2.39 -0.02 0.63 16 33 H -0.29 -1.52 7.11 99.48 0.71 -0.82 16 34 H -0.30 -1.85 7.11 99.48 0.71 -1.15 16 35 H 0.21 -2.06 6.35 -2.91 -0.02 -2.08 16 36 H 0.17 -3.22 8.12 -2.39 -0.02 -3.24 16 37 H 0.14 -2.15 8.14 -2.39 -0.02 -2.17 16 38 H 0.42 -7.66 8.70 -92.71 -0.81 -8.46 16 39 H 0.10 -1.10 7.73 -2.39 -0.02 -1.12 16 40 H 0.10 -1.35 8.14 -2.39 -0.02 -1.37 16 41 H 0.16 -1.32 8.05 -2.91 -0.02 -1.34 16 42 H 0.15 -0.81 8.06 -2.91 -0.02 -0.83 16 43 H 0.16 -1.55 6.64 -2.91 -0.02 -1.57 16 44 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H 0.10 -0.74 6.30 -2.39 -0.02 -0.75 16 46 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 47 H 0.14 -0.07 8.06 -2.91 -0.02 -0.09 16 48 H 0.13 0.40 8.06 -2.91 -0.02 0.37 16 49 H 0.11 1.08 8.06 -2.91 -0.02 1.05 16 Total: 0.00 -32.70 440.90 0.73 -31.97 By element: Atomic # 1 Polarization: -27.90 SS G_CDS: -0.38 Total: -28.28 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 4.62 Total: 0.88 kcal Atomic # 7 Polarization: 7.44 SS G_CDS: -3.50 Total: 3.94 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -1.97 Total: -9.22 kcal Atomic # 14 Polarization: -0.87 SS G_CDS: 2.11 Total: 1.24 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.15 Total: -0.53 kcal Total: -32.70 0.73 -31.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9750034_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.842 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds