Wall clock time and date at job start Mon Mar 8 2021 04:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 114.00358 * 2 1 4 4 H 1.09002 * 112.84177 * 341.18951 * 3 2 1 5 5 C 1.53772 * 113.61749 * 112.49700 * 3 2 1 6 6 C 1.53779 * 87.08189 * 139.98027 * 5 3 2 7 7 H 1.09004 * 113.61443 * 89.11418 * 6 5 3 8 8 N 1.46500 * 113.61657 * 220.01835 * 6 5 3 9 9 C 1.34775 * 120.00345 * 252.49742 * 8 6 5 10 10 O 1.21279 * 119.99692 * 0.02562 * 9 8 6 11 11 C 1.50702 * 120.00256 * 179.97438 * 9 8 6 12 12 C 1.53004 * 109.47016 * 64.99924 * 11 9 8 13 13 O 1.42895 * 109.47030 * 184.99997 * 11 9 8 14 14 C 1.35899 * 116.99737 * 155.32424 * 13 11 9 15 15 C 1.38732 * 120.05726 * 5.08806 * 14 13 11 16 16 C 1.38146 * 119.94053 * 179.74751 * 15 14 13 17 17 C 1.38260 * 120.05963 * 0.50133 * 16 15 14 18 18 C 1.50703 * 119.94747 * 179.75087 * 17 16 15 19 19 O 1.42897 * 109.46906 * 245.02146 * 18 17 16 20 20 Si 1.86305 * 109.46691 * 5.01876 * 18 17 16 21 21 C 1.38267 * 120.10894 * 359.77031 * 17 16 15 22 22 C 1.38141 * 120.05694 * 359.97438 * 21 17 16 23 23 C 1.53776 * 87.08146 * 334.56774 * 6 5 3 24 24 H 1.09003 * 109.46660 * 60.00009 * 1 2 3 25 25 H 1.08994 * 109.47456 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46910 * 300.00806 * 1 2 3 27 27 H 1.08999 * 113.61718 * 254.53101 * 5 3 2 28 28 H 1.08998 * 113.61600 * 25.43529 * 5 3 2 29 29 H 0.97006 * 119.99717 * 72.50182 * 8 6 5 30 30 H 1.09000 * 109.47022 * 305.00144 * 11 9 8 31 31 H 1.08990 * 109.47112 * 179.97438 * 12 11 9 32 32 H 1.08998 * 109.46984 * 300.00663 * 12 11 9 33 33 H 1.08999 * 109.46706 * 59.99818 * 12 11 9 34 34 H 1.07998 * 120.02865 * 359.97438 * 15 14 13 35 35 H 1.08004 * 119.96780 * 180.23098 * 16 15 14 36 36 H 1.08999 * 109.47388 * 125.01996 * 18 17 16 37 37 H 0.96706 * 114.00450 * 59.99735 * 19 18 17 38 38 H 1.48495 * 109.99880 * 58.68704 * 20 18 17 39 39 H 1.48507 * 109.99445 * 180.02562 * 20 18 17 40 40 H 1.08007 * 119.96767 * 179.97438 * 21 17 16 41 41 H 1.08004 * 120.02354 * 179.97438 * 22 21 17 42 42 H 1.08999 * 113.61696 * 270.88224 * 23 6 5 43 43 H 1.08999 * 113.61707 * 139.97578 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3138 2.0788 -0.3239 5 6 2.7535 1.6489 1.3017 6 6 3.8228 2.3180 0.4222 7 1 3.6224 3.3692 0.2148 8 7 5.1936 2.0785 0.8804 9 6 5.8952 3.0744 1.4568 10 8 5.3916 4.1688 1.5966 11 6 7.3050 2.8278 1.9287 12 6 8.1999 2.5245 0.7253 13 8 7.7916 3.9898 2.6033 14 6 8.7831 3.8045 3.5141 15 6 9.3503 2.5491 3.6780 16 6 10.3616 2.3646 4.6008 17 6 10.8014 3.4274 5.3681 18 6 11.9010 3.2221 6.3780 19 8 11.3855 3.4364 7.6934 20 14 12.5519 1.4818 6.2419 21 6 10.2338 4.6784 5.2105 22 6 9.2259 4.8693 4.2854 23 6 3.3757 1.3717 -0.7045 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.2141 2.3477 1.9411 28 1 3.1166 0.7741 1.8410 29 1 5.5962 1.2030 0.7689 30 1 7.3160 1.9792 2.6127 31 1 9.2196 2.3466 1.0665 32 1 7.8286 1.6383 0.2107 33 1 8.1888 3.3731 0.0413 34 1 9.0041 1.7176 3.0821 35 1 10.8061 1.3883 4.7262 36 1 12.7085 3.9282 6.1847 37 1 10.6621 2.8415 7.9342 38 1 13.0618 1.2362 4.8691 39 1 13.6365 1.2663 7.2333 40 1 10.5788 5.5069 5.8114 41 1 8.7826 5.8465 4.1630 42 1 3.9089 0.4211 -0.7136 43 1 3.3386 1.8468 -1.6848 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9984030_10157680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:08:17 Heat of formation + Delta-G solvation = -86.745270 kcal Electronic energy + Delta-G solvation = -24921.975704 eV Core-core repulsion = 21128.657332 eV Total energy + Delta-G solvation = -3793.318372 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84556 -41.05027 -39.96899 -38.93331 -37.34428 -37.08014 -34.63292 -33.02481 -31.87310 -31.48945 -27.94898 -26.91670 -26.77079 -25.98863 -24.70836 -23.84332 -22.39148 -21.55957 -21.01820 -19.55787 -18.63675 -18.17643 -18.07734 -16.95076 -16.89535 -16.86040 -16.59017 -16.24450 -16.12708 -15.80662 -15.59868 -15.38905 -15.19165 -14.82769 -14.63630 -14.44186 -14.09657 -13.82020 -13.61294 -13.57683 -13.45116 -13.40572 -12.94497 -12.86782 -12.30045 -12.27068 -12.20715 -12.07066 -12.01867 -11.94963 -11.71672 -10.82117 -10.56226 -10.41113 -10.17296 -10.04839 -9.20818 -5.05987 0.28331 0.29038 1.29169 1.43115 1.44843 1.61503 1.96488 2.39529 2.65441 2.82621 3.28463 3.40471 3.41389 3.48656 3.54468 3.65087 3.67318 3.74794 3.76364 3.81704 3.86469 4.18316 4.21225 4.27884 4.36709 4.39532 4.41098 4.48552 4.51240 4.58986 4.60137 4.65272 4.70252 4.80778 4.86441 4.87474 4.93994 4.94711 5.16043 5.24806 5.35019 5.50129 5.68234 6.14045 6.22266 6.36938 6.58746 7.05482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.376 6.376 3 C 0.064 3.936 4 H 0.093 0.907 5 C -0.169 4.169 6 C 0.125 3.875 7 H 0.121 0.879 8 N -0.714 5.714 9 C 0.520 3.480 10 O -0.512 6.512 11 C 0.066 3.934 12 C -0.178 4.178 13 O -0.283 6.283 14 C 0.136 3.864 15 C -0.209 4.209 16 C -0.074 4.074 17 C -0.158 4.158 18 C -0.063 4.063 19 O -0.541 6.541 20 Si 0.684 3.316 21 C -0.051 4.051 22 C -0.146 4.146 23 C -0.143 4.143 24 H 0.044 0.956 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.403 0.597 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.379 0.621 38 H -0.258 1.258 39 H -0.255 1.255 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.098 0.902 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 -5.573 -1.929 6.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.005 3.995 4 H 0.111 0.889 5 C -0.208 4.208 6 C 0.021 3.979 7 H 0.139 0.861 8 N -0.367 5.367 9 C 0.305 3.695 10 O -0.385 6.385 11 C 0.006 3.994 12 C -0.235 4.235 13 O -0.196 6.196 14 C 0.090 3.910 15 C -0.227 4.227 16 C -0.092 4.092 17 C -0.158 4.158 18 C -0.174 4.174 19 O -0.346 6.346 20 Si 0.586 3.414 21 C -0.069 4.069 22 C -0.165 4.165 23 C -0.182 4.182 24 H 0.062 0.938 25 H 0.106 0.894 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.239 0.761 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.130 0.870 37 H 0.226 0.774 38 H -0.183 1.183 39 H -0.180 1.180 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.116 0.884 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.361 -4.785 -2.049 5.380 hybrid contribution 0.006 0.152 -0.310 0.346 sum -1.355 -4.633 -2.359 5.373 Atomic orbital electron populations 1.22837 0.80666 1.03105 1.00191 1.87937 1.20079 1.26802 1.94559 1.23444 0.93758 0.85877 0.96403 0.88871 1.24028 0.97417 1.01469 0.97871 1.22244 0.79996 1.00710 0.94998 0.86144 1.45764 1.14877 1.14042 1.61999 1.20119 0.86607 0.84831 0.77954 1.90773 1.70423 1.23630 1.53665 1.22202 0.92283 0.89194 0.95740 1.22360 1.00418 1.03559 0.97199 1.86232 1.49838 1.32203 1.51316 1.19083 0.88476 0.94062 0.89348 1.21210 1.01171 0.96591 1.03738 1.20760 0.95717 0.97828 0.94847 1.20244 1.00833 0.94371 1.00399 1.24976 0.97272 1.12235 0.82927 1.86507 1.55762 1.63055 1.29296 0.94871 0.85459 0.80157 0.80901 1.20862 0.93745 0.96838 0.95422 1.20545 0.99875 0.98660 0.97402 1.23630 0.95722 1.00346 0.98462 0.93777 0.89425 0.93806 0.90452 0.88629 0.76144 0.88103 0.90251 0.90109 0.90421 0.84886 0.85312 0.87025 0.77406 1.18301 1.17988 0.84833 0.84672 0.88387 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.85 101.05 1.10 1.06 16 2 O -0.38 -0.26 10.71 -35.23 -0.38 -0.64 16 3 C 0.06 -0.07 4.31 -25.92 -0.11 -0.18 16 4 H 0.09 -0.20 7.87 -51.93 -0.41 -0.61 16 5 C -0.17 0.16 7.71 -25.92 -0.20 -0.04 16 6 C 0.13 -0.13 4.24 -67.12 -0.28 -0.42 16 7 H 0.12 0.04 7.47 -51.93 -0.39 -0.35 16 8 N -0.71 1.17 5.32 -53.02 -0.28 0.88 16 9 C 0.52 0.76 7.18 -10.99 -0.08 0.69 16 10 O -0.51 -3.21 16.11 -14.30 -0.23 -3.44 16 11 C 0.07 -0.03 2.64 -27.88 -0.07 -0.10 16 12 C -0.18 0.44 9.12 37.16 0.34 0.78 16 13 O -0.28 -0.82 9.34 -39.28 -0.37 -1.19 16 14 C 0.14 0.24 6.60 -39.22 -0.26 -0.02 16 15 C -0.21 0.07 8.23 -39.43 -0.32 -0.25 16 16 C -0.07 0.05 8.66 -39.61 -0.34 -0.29 16 17 C -0.16 -0.05 5.35 -104.60 -0.56 -0.61 16 18 C -0.06 0.01 2.80 36.01 0.10 0.11 16 19 O -0.54 -0.23 12.83 -35.23 -0.45 -0.68 16 20 Si 0.68 -0.77 29.80 -169.99 -5.07 -5.84 16 21 C -0.05 -0.05 9.68 -39.61 -0.38 -0.44 16 22 C -0.15 -0.27 9.99 -39.43 -0.39 -0.67 16 23 C -0.14 0.31 7.66 -25.92 -0.20 0.11 16 24 H 0.04 -0.09 8.14 -51.93 -0.42 -0.52 16 25 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 26 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 27 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 28 H 0.10 -0.07 8.14 -51.93 -0.42 -0.50 16 29 H 0.40 -1.85 8.51 -40.82 -0.35 -2.20 16 30 H 0.10 -0.30 6.31 -51.93 -0.33 -0.63 16 31 H 0.08 -0.22 6.91 -51.93 -0.36 -0.57 16 32 H 0.08 -0.40 7.92 -51.93 -0.41 -0.81 16 33 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 34 H 0.13 -0.38 5.43 -52.49 -0.29 -0.67 16 35 H 0.13 -0.37 4.90 -52.48 -0.26 -0.63 16 36 H 0.11 0.04 7.96 -51.93 -0.41 -0.38 16 37 H 0.38 -1.29 8.70 45.56 0.40 -0.89 16 38 H -0.26 -0.29 7.11 56.52 0.40 0.11 16 39 H -0.25 -0.58 7.11 56.52 0.40 -0.17 16 40 H 0.13 0.04 8.06 -52.48 -0.42 -0.39 16 41 H 0.14 0.20 8.06 -52.48 -0.42 -0.22 16 42 H 0.10 -0.25 8.12 -51.93 -0.42 -0.67 16 43 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 LS Contribution 356.54 15.07 5.37 5.37 Total: 0.00 -9.30 356.54 -9.30 -18.61 By element: Atomic # 1 Polarization: -6.57 SS G_CDS: -6.22 Total: -12.80 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.67 Total: -0.28 kcal Atomic # 7 Polarization: 1.17 SS G_CDS: -0.28 Total: 0.88 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -1.43 Total: -5.95 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: -5.07 Total: -5.84 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -9.30 -9.30 -18.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_10157680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.140 kcal (2) G-P(sol) polarization free energy of solvation -9.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds