Wall clock time and date at job start Mon Mar 8 2021 04:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 114.00358 * 2 1 4 4 H 1.09002 * 112.84177 * 341.18951 * 3 2 1 5 5 C 1.53772 * 113.61749 * 112.49700 * 3 2 1 6 6 C 1.53779 * 87.08189 * 139.98027 * 5 3 2 7 7 H 1.09004 * 113.61443 * 89.11418 * 6 5 3 8 8 N 1.46500 * 113.61657 * 220.01835 * 6 5 3 9 9 C 1.34775 * 120.00345 * 252.49742 * 8 6 5 10 10 O 1.21279 * 119.99692 * 0.02562 * 9 8 6 11 11 C 1.50702 * 120.00256 * 179.97438 * 9 8 6 12 12 C 1.53004 * 109.47016 * 64.99924 * 11 9 8 13 13 O 1.42895 * 109.47030 * 184.99997 * 11 9 8 14 14 C 1.35899 * 116.99737 * 155.32424 * 13 11 9 15 15 C 1.38732 * 120.05726 * 5.08806 * 14 13 11 16 16 C 1.38146 * 119.94053 * 179.74751 * 15 14 13 17 17 C 1.38260 * 120.05963 * 0.50133 * 16 15 14 18 18 C 1.50703 * 119.94747 * 179.75087 * 17 16 15 19 19 O 1.42897 * 109.46906 * 245.02146 * 18 17 16 20 20 Si 1.86305 * 109.46691 * 5.01876 * 18 17 16 21 21 C 1.38267 * 120.10894 * 359.77031 * 17 16 15 22 22 C 1.38141 * 120.05694 * 359.97438 * 21 17 16 23 23 C 1.53776 * 87.08146 * 334.56774 * 6 5 3 24 24 H 1.09003 * 109.46660 * 60.00009 * 1 2 3 25 25 H 1.08994 * 109.47456 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46910 * 300.00806 * 1 2 3 27 27 H 1.08999 * 113.61718 * 254.53101 * 5 3 2 28 28 H 1.08998 * 113.61600 * 25.43529 * 5 3 2 29 29 H 0.97006 * 119.99717 * 72.50182 * 8 6 5 30 30 H 1.09000 * 109.47022 * 305.00144 * 11 9 8 31 31 H 1.08990 * 109.47112 * 179.97438 * 12 11 9 32 32 H 1.08998 * 109.46984 * 300.00663 * 12 11 9 33 33 H 1.08999 * 109.46706 * 59.99818 * 12 11 9 34 34 H 1.07998 * 120.02865 * 359.97438 * 15 14 13 35 35 H 1.08004 * 119.96780 * 180.23098 * 16 15 14 36 36 H 1.08999 * 109.47388 * 125.01996 * 18 17 16 37 37 H 0.96706 * 114.00450 * 59.99735 * 19 18 17 38 38 H 1.48495 * 109.99880 * 58.68704 * 20 18 17 39 39 H 1.48507 * 109.99445 * 180.02562 * 20 18 17 40 40 H 1.08007 * 119.96767 * 179.97438 * 21 17 16 41 41 H 1.08004 * 120.02354 * 179.97438 * 22 21 17 42 42 H 1.08999 * 113.61696 * 270.88224 * 23 6 5 43 43 H 1.08999 * 113.61707 * 139.97578 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3138 2.0788 -0.3239 5 6 2.7535 1.6489 1.3017 6 6 3.8228 2.3180 0.4222 7 1 3.6224 3.3692 0.2148 8 7 5.1936 2.0785 0.8804 9 6 5.8952 3.0744 1.4568 10 8 5.3916 4.1688 1.5966 11 6 7.3050 2.8278 1.9287 12 6 8.1999 2.5245 0.7253 13 8 7.7916 3.9898 2.6033 14 6 8.7831 3.8045 3.5141 15 6 9.3503 2.5491 3.6780 16 6 10.3616 2.3646 4.6008 17 6 10.8014 3.4274 5.3681 18 6 11.9010 3.2221 6.3780 19 8 11.3855 3.4364 7.6934 20 14 12.5519 1.4818 6.2419 21 6 10.2338 4.6784 5.2105 22 6 9.2259 4.8693 4.2854 23 6 3.3757 1.3717 -0.7045 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.2141 2.3477 1.9411 28 1 3.1166 0.7741 1.8410 29 1 5.5962 1.2030 0.7689 30 1 7.3160 1.9792 2.6127 31 1 9.2196 2.3466 1.0665 32 1 7.8286 1.6383 0.2107 33 1 8.1888 3.3731 0.0413 34 1 9.0041 1.7176 3.0821 35 1 10.8061 1.3883 4.7262 36 1 12.7085 3.9282 6.1847 37 1 10.6621 2.8415 7.9342 38 1 13.0618 1.2362 4.8691 39 1 13.6365 1.2663 7.2333 40 1 10.5788 5.5069 5.8114 41 1 8.7826 5.8465 4.1630 42 1 3.9089 0.4211 -0.7136 43 1 3.3386 1.8468 -1.6848 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_10157680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:08:16 Heat of formation + Delta-G solvation = -87.749016 kcal Electronic energy + Delta-G solvation = -24922.019229 eV Core-core repulsion = 21128.657332 eV Total energy + Delta-G solvation = -3793.361898 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.87059 -41.03502 -39.97129 -38.97474 -37.31970 -37.09719 -34.67072 -32.96276 -31.85688 -31.47677 -27.83710 -26.82874 -26.70777 -25.94721 -24.64266 -23.83121 -22.40683 -21.56919 -20.95030 -19.54501 -18.62061 -18.16025 -18.06224 -16.96808 -16.88510 -16.81484 -16.58031 -16.22239 -16.06517 -15.78774 -15.58085 -15.44931 -15.17644 -14.77395 -14.61246 -14.44577 -14.09412 -13.76090 -13.55929 -13.47552 -13.39468 -13.29443 -12.88497 -12.75927 -12.26627 -12.21562 -12.15840 -12.06134 -12.02893 -11.85904 -11.69686 -10.92775 -10.48549 -10.39709 -10.17452 -10.05558 -9.23783 -4.98633 0.25790 0.28740 1.34367 1.36918 1.47320 1.65917 1.99562 2.44451 2.63959 2.92537 3.39041 3.48689 3.51514 3.56924 3.66576 3.72240 3.76842 3.84861 3.87096 3.88065 3.94060 4.27717 4.29529 4.35772 4.48751 4.51173 4.54784 4.58140 4.62739 4.70114 4.71562 4.72296 4.85605 4.93613 4.94412 4.95586 5.00358 5.08888 5.17424 5.24260 5.41038 5.48517 5.68805 6.23282 6.26096 6.43738 6.79764 7.06626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.394 6.394 3 C 0.060 3.940 4 H 0.100 0.900 5 C -0.167 4.167 6 C 0.122 3.878 7 H 0.102 0.898 8 N -0.695 5.695 9 C 0.517 3.483 10 O -0.570 6.570 11 C 0.063 3.937 12 C -0.173 4.173 13 O -0.314 6.314 14 C 0.121 3.879 15 C -0.202 4.202 16 C -0.072 4.072 17 C -0.161 4.161 18 C -0.074 4.074 19 O -0.559 6.559 20 Si 0.781 3.219 21 C -0.060 4.060 22 C -0.167 4.167 23 C -0.131 4.131 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.421 0.579 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.102 0.898 37 H 0.395 0.605 38 H -0.281 1.281 39 H -0.303 1.303 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 -7.998 -2.506 8.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.313 6.313 3 C 0.001 3.999 4 H 0.118 0.882 5 C -0.206 4.206 6 C 0.017 3.983 7 H 0.120 0.880 8 N -0.348 5.348 9 C 0.303 3.697 10 O -0.448 6.448 11 C 0.004 3.996 12 C -0.230 4.230 13 O -0.228 6.228 14 C 0.076 3.924 15 C -0.220 4.220 16 C -0.089 4.089 17 C -0.162 4.162 18 C -0.183 4.183 19 O -0.367 6.367 20 Si 0.687 3.313 21 C -0.079 4.079 22 C -0.186 4.186 23 C -0.169 4.169 24 H 0.070 0.930 25 H 0.112 0.888 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.259 0.741 30 H 0.149 0.851 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.076 0.924 34 H 0.181 0.819 35 H 0.174 0.826 36 H 0.120 0.880 37 H 0.245 0.755 38 H -0.208 1.208 39 H -0.232 1.232 40 H 0.150 0.850 41 H 0.143 0.857 42 H 0.126 0.874 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.173 -7.246 -2.639 7.801 hybrid contribution -0.070 0.917 -0.102 0.925 sum -1.244 -6.329 -2.741 7.009 Atomic orbital electron populations 1.22955 0.79887 1.03728 1.00719 1.87899 1.21093 1.27654 1.94668 1.23552 0.94368 0.85610 0.96364 0.88171 1.24001 0.97445 1.01199 0.97964 1.22174 0.80229 1.00110 0.95800 0.87959 1.45641 1.14444 1.14253 1.60499 1.20592 0.87409 0.84352 0.77311 1.90747 1.71794 1.26018 1.56288 1.22450 0.91123 0.89100 0.96918 1.22378 1.00544 1.04029 0.96084 1.86195 1.50381 1.34306 1.51873 1.19239 0.88779 0.94924 0.89457 1.21508 1.00534 0.96412 1.03592 1.21059 0.95303 0.98567 0.94015 1.20361 1.00820 0.94355 1.00654 1.25198 0.97032 1.13378 0.82712 1.86468 1.56644 1.64090 1.29476 0.93793 0.82893 0.77529 0.77069 1.20918 0.93903 0.97535 0.95503 1.20620 1.00722 0.98820 0.98452 1.23565 0.94832 1.00306 0.98159 0.93011 0.88820 0.93546 0.91421 0.88487 0.74054 0.85126 0.89434 0.87035 0.92375 0.81919 0.82648 0.88013 0.75534 1.20793 1.23193 0.84969 0.85686 0.87373 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 10.85 113.37 1.23 1.16 16 2 O -0.39 -0.37 10.71 -148.98 -1.60 -1.97 16 3 C 0.06 -0.14 4.31 31.12 0.13 -0.01 16 4 H 0.10 -0.42 7.87 -2.39 -0.02 -0.44 16 5 C -0.17 0.27 7.71 31.12 0.24 0.51 16 6 C 0.12 -0.23 4.24 45.52 0.19 -0.04 16 7 H 0.10 0.24 7.47 -2.38 -0.02 0.22 16 8 N -0.69 2.62 5.32 -440.05 -2.34 0.28 16 9 C 0.52 1.79 7.18 87.66 0.63 2.42 16 10 O -0.57 -8.44 16.11 15.96 0.26 -8.18 16 11 C 0.06 -0.09 2.64 29.85 0.08 -0.01 16 12 C -0.17 1.09 9.12 71.98 0.66 1.75 16 13 O -0.31 -2.14 9.34 -73.42 -0.69 -2.83 16 14 C 0.12 0.49 6.60 22.51 0.15 0.64 16 15 C -0.20 0.45 8.23 22.37 0.18 0.63 16 16 C -0.07 0.21 8.66 22.25 0.19 0.41 16 17 C -0.16 -0.06 5.35 -19.85 -0.11 -0.17 16 18 C -0.07 0.03 2.80 71.24 0.20 0.23 16 19 O -0.56 -0.47 12.83 -148.98 -1.91 -2.38 16 20 Si 0.78 -2.54 29.80 68.60 2.04 -0.49 16 21 C -0.06 -0.20 9.68 22.25 0.22 0.01 16 22 C -0.17 -0.93 9.99 22.37 0.22 -0.71 16 23 C -0.13 0.67 7.66 31.12 0.24 0.91 16 24 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 25 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.42 -4.66 8.51 -92.70 -0.79 -5.45 16 30 H 0.13 -1.06 6.31 -2.39 -0.02 -1.07 16 31 H 0.09 -0.66 6.91 -2.39 -0.02 -0.67 16 32 H 0.11 -1.42 7.92 -2.39 -0.02 -1.44 16 33 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.16 -1.46 5.43 -2.91 -0.02 -1.48 16 35 H 0.16 -1.36 4.90 -2.91 -0.01 -1.37 16 36 H 0.10 0.13 7.96 -2.39 -0.02 0.11 16 37 H 0.39 -2.91 8.70 -74.05 -0.64 -3.55 16 38 H -0.28 -0.20 7.11 99.48 0.71 0.50 16 39 H -0.30 -1.50 7.11 99.48 0.71 -0.79 16 40 H 0.13 0.33 8.06 -2.91 -0.02 0.31 16 41 H 0.13 0.78 8.06 -2.91 -0.02 0.75 16 42 H 0.11 -0.75 8.12 -2.39 -0.02 -0.77 16 43 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 Total: 0.00 -24.67 356.54 -0.13 -24.80 By element: Atomic # 1 Polarization: -16.59 SS G_CDS: -0.36 Total: -16.95 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 4.46 Total: 7.72 kcal Atomic # 7 Polarization: 2.62 SS G_CDS: -2.34 Total: 0.28 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -3.94 Total: -15.36 kcal Atomic # 14 Polarization: -2.54 SS G_CDS: 2.04 Total: -0.49 kcal Total: -24.67 -0.13 -24.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_10157680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.950 kcal (2) G-P(sol) polarization free energy of solvation -24.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds