Wall clock time and date at job start Mon Mar 8 2021 04:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99903 * 2 1 4 4 H 1.08993 * 112.90736 * 341.24804 * 3 2 1 5 5 C 1.53962 * 113.66723 * 112.55150 * 3 2 1 6 6 C 1.53782 * 87.11063 * 139.88843 * 5 3 2 7 7 H 1.08997 * 113.61225 * 89.18406 * 6 5 3 8 8 N 1.46499 * 113.61191 * 220.09091 * 6 5 3 9 9 C 1.34783 * 119.99531 * 252.49880 * 8 6 5 10 10 O 1.21719 * 120.00145 * 0.02562 * 9 8 6 11 11 C 1.46568 * 119.99783 * 180.02562 * 9 8 6 12 12 C 1.40853 * 126.58103 * 180.02562 * 11 9 8 13 13 C 1.40093 * 132.86315 * 359.97438 * 12 11 9 14 14 C 1.36448 * 119.25137 * 179.97438 * 13 12 11 15 15 C 1.50709 * 120.29166 * 180.02562 * 14 13 12 16 16 O 1.42899 * 109.47060 * 120.00377 * 15 14 13 17 17 Si 1.86305 * 109.46828 * 240.00187 * 15 14 13 18 18 C 1.40150 * 119.41341 * 0.02562 * 14 13 12 19 19 C 1.35186 * 120.31879 * 359.97438 * 18 14 13 20 20 N 1.36248 * 120.70334 * 0.02562 * 19 18 14 21 21 N 1.40019 * 132.01043 * 180.02562 * 20 19 18 22 22 C 1.30735 * 109.60418 * 179.72708 * 21 20 19 23 23 C 1.53781 * 87.08260 * 334.63747 * 6 5 3 24 24 H 1.08998 * 109.46809 * 299.99633 * 1 2 3 25 25 H 1.08997 * 109.47166 * 60.00208 * 1 2 3 26 26 H 1.09001 * 109.46682 * 179.97438 * 1 2 3 27 27 H 1.08997 * 113.53543 * 25.33518 * 5 3 2 28 28 H 1.08998 * 113.73879 * 254.47115 * 5 3 2 29 29 H 0.96997 * 120.00777 * 72.49903 * 8 6 5 30 30 H 1.08000 * 120.37623 * 359.96238 * 13 12 11 31 31 H 1.09002 * 109.47034 * 0.02562 * 15 14 13 32 32 H 0.96705 * 113.99744 * 59.99394 * 16 15 14 33 33 H 1.48504 * 109.99474 * 179.97438 * 17 15 14 34 34 H 1.48496 * 110.00005 * 301.32135 * 17 15 14 35 35 H 1.08000 * 119.84589 * 180.02562 * 18 14 13 36 36 H 1.07998 * 119.64973 * 179.97438 * 19 18 14 37 37 H 1.08003 * 125.62979 * 180.26617 * 22 21 20 38 38 H 1.09002 * 113.61445 * 139.98212 * 23 6 5 39 39 H 1.09002 * 113.61408 * 270.79943 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3143 2.0797 -0.3227 5 6 2.7556 1.6501 1.3023 6 6 3.8253 2.3175 0.4218 7 1 3.6264 3.3689 0.2145 8 7 5.1960 2.0755 0.8788 9 6 5.8998 3.0704 1.4546 10 8 5.3964 4.1696 1.5953 11 6 7.2713 2.8286 1.9113 12 6 8.1276 3.7617 2.5279 13 6 7.9737 5.1090 2.8797 14 6 9.0090 5.7635 3.4811 15 6 8.8688 7.2127 3.8700 16 8 9.0476 7.3466 5.2814 17 14 10.1591 8.2215 2.9820 18 6 10.2039 5.0760 3.7339 19 6 10.3300 3.7759 3.3857 20 7 9.3020 3.1137 2.7848 21 7 9.1738 1.7947 2.3328 22 6 7.9825 1.6194 1.8235 23 6 3.3756 1.3719 -0.7045 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1177 0.7747 1.8413 28 1 2.2189 2.3497 1.9431 29 1 5.5971 1.1995 0.7670 30 1 7.0462 5.6238 2.6770 31 1 7.8759 7.5684 3.5945 32 1 9.9111 7.0482 5.5984 33 1 10.0310 9.6528 3.3566 34 1 11.5161 7.7257 3.3249 35 1 11.0276 5.5871 4.2099 36 1 11.2558 3.2567 3.5852 37 1 7.6074 0.6980 1.4031 38 1 3.3385 1.8471 -1.6848 39 1 3.9083 0.4209 -0.7150 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_11618758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:08:27 Heat of formation + Delta-G solvation = 24.986382 kcal Electronic energy + Delta-G solvation = -24111.051455 eV Core-core repulsion = 20409.493839 eV Total energy + Delta-G solvation = -3701.557616 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.32681 -41.05689 -39.71409 -39.27173 -37.32210 -37.20219 -34.37700 -33.95007 -32.12540 -30.34475 -27.85281 -27.30538 -26.71200 -25.52392 -24.63836 -23.43691 -22.95218 -21.41317 -20.87047 -19.08022 -18.61660 -18.25981 -17.78144 -17.46963 -17.01334 -16.77556 -16.53190 -16.19096 -16.08120 -15.85824 -15.50172 -15.47878 -15.07952 -14.73585 -14.55250 -14.22827 -13.81999 -13.51475 -13.45079 -13.41300 -13.23264 -12.72315 -12.48648 -12.20911 -12.10167 -12.05202 -11.89903 -11.81991 -11.60277 -10.95023 -10.89107 -10.45235 -10.33123 -10.04592 -8.80862 -4.88561 -0.57225 -0.14828 1.00769 1.01893 1.21563 1.60492 1.89049 2.07445 2.18558 2.47256 2.95106 3.10355 3.23251 3.36574 3.48269 3.54473 3.58794 3.70094 3.85025 3.86055 3.90275 3.99066 4.18181 4.32283 4.35769 4.42274 4.54874 4.56300 4.57391 4.73629 4.76200 4.77910 4.87182 4.98616 4.99801 5.09704 5.10006 5.15553 5.27278 5.56567 5.64325 6.27041 6.28212 6.46335 6.60794 7.28917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.061 3.939 4 H 0.103 0.897 5 C -0.168 4.168 6 C 0.127 3.873 7 H 0.107 0.893 8 N -0.703 5.703 9 C 0.600 3.400 10 O -0.589 6.589 11 C -0.341 4.341 12 C 0.153 3.847 13 C -0.115 4.115 14 C -0.050 4.050 15 C -0.085 4.085 16 O -0.542 6.542 17 Si 0.769 3.231 18 C -0.156 4.156 19 C 0.117 3.883 20 N -0.274 5.274 21 N -0.340 5.340 22 C 0.131 3.869 23 C -0.133 4.133 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.413 0.587 30 H 0.152 0.848 31 H 0.123 0.877 32 H 0.390 0.610 33 H -0.294 1.294 34 H -0.254 1.254 35 H 0.191 0.809 36 H 0.205 0.795 37 H 0.233 0.767 38 H 0.091 0.909 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.423 -0.925 -2.358 3.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.003 3.997 4 H 0.121 0.879 5 C -0.208 4.208 6 C 0.022 3.978 7 H 0.125 0.875 8 N -0.354 5.354 9 C 0.390 3.610 10 O -0.471 6.471 11 C -0.356 4.356 12 C 0.032 3.968 13 C -0.135 4.135 14 C -0.056 4.056 15 C -0.192 4.192 16 O -0.350 6.350 17 Si 0.669 3.331 18 C -0.177 4.177 19 C -0.009 4.009 20 N -0.038 5.038 21 N -0.160 5.160 22 C -0.050 4.050 23 C -0.171 4.171 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.250 0.750 30 H 0.170 0.830 31 H 0.141 0.859 32 H 0.241 0.759 33 H -0.221 1.221 34 H -0.178 1.178 35 H 0.208 0.792 36 H 0.222 0.778 37 H 0.249 0.751 38 H 0.110 0.890 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.380 -0.304 -2.004 3.942 hybrid contribution -0.796 -0.283 1.001 1.310 sum 2.585 -0.587 -1.003 2.834 Atomic orbital electron populations 1.22952 0.79906 1.03667 1.00754 1.87901 1.21113 1.27817 1.94664 1.23589 0.94306 0.85529 0.96286 0.87889 1.24032 0.97690 1.01065 0.97973 1.22117 0.80222 1.00124 0.95359 0.87496 1.45497 1.14484 1.14139 1.61290 1.17039 0.83916 0.83807 0.76212 1.90746 1.72040 1.25402 1.58947 1.19705 0.97840 0.95217 1.22838 1.19549 0.87020 0.93799 0.96474 1.20664 1.01072 0.90612 1.01174 1.20575 0.93018 0.97372 0.94682 1.25312 1.12610 0.94792 0.86497 1.86682 1.41134 1.87111 1.20115 0.93415 0.74956 0.75340 0.89342 1.21096 0.99526 0.92949 1.04158 1.22193 0.92099 0.92870 0.93699 1.46309 1.10479 1.09239 1.37754 1.77571 1.21684 0.91948 1.24836 1.24599 0.89242 0.98694 0.92453 1.23565 0.94868 1.00293 0.98360 0.93563 0.92882 0.88930 0.89186 0.91348 0.74968 0.83023 0.85894 0.75940 1.22058 1.17804 0.79239 0.77800 0.75081 0.89000 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.40 -1.20 10.72 -148.98 -1.60 -2.79 16 3 C 0.06 -0.02 4.32 31.18 0.13 0.11 16 4 H 0.10 -0.30 7.87 -2.39 -0.02 -0.32 16 5 C -0.17 -0.19 7.72 31.18 0.24 0.05 16 6 C 0.13 0.10 4.24 45.52 0.19 0.30 16 7 H 0.11 0.40 7.46 -2.39 -0.02 0.38 16 8 N -0.70 -0.67 5.35 -444.08 -2.37 -3.04 16 9 C 0.60 4.65 7.78 86.41 0.67 5.32 16 10 O -0.59 -8.66 15.31 -4.41 -0.07 -8.73 16 11 C -0.34 -2.12 6.17 -19.90 -0.12 -2.24 16 12 C 0.15 1.03 6.76 39.50 0.27 1.30 16 13 C -0.12 -0.51 9.35 22.30 0.21 -0.30 16 14 C -0.05 0.06 4.53 -19.82 -0.09 -0.03 16 15 C -0.08 0.22 2.84 71.24 0.20 0.42 16 16 O -0.54 0.17 12.88 -148.98 -1.92 -1.75 16 17 Si 0.77 -3.90 31.97 68.60 2.19 -1.70 16 18 C -0.16 0.86 8.38 22.03 0.18 1.04 16 19 C 0.12 -0.34 11.18 83.30 0.93 0.59 16 20 N -0.27 -1.16 3.86 -187.28 -0.72 -1.88 16 21 N -0.34 -1.81 12.57 -56.62 -0.71 -2.52 16 22 C 0.13 0.22 11.44 85.42 0.98 1.20 16 23 C -0.13 0.33 7.66 31.12 0.24 0.57 16 24 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 25 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 26 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.41 -2.07 7.65 -92.71 -0.71 -2.78 16 30 H 0.15 0.97 7.01 -2.91 -0.02 0.95 16 31 H 0.12 -0.26 7.71 -2.39 -0.02 -0.28 16 32 H 0.39 -3.30 8.08 -74.05 -0.60 -3.89 16 33 H -0.29 -0.84 7.11 99.48 0.71 -0.13 16 34 H -0.25 1.18 7.05 99.48 0.70 1.88 16 35 H 0.19 -2.40 7.26 -2.91 -0.02 -2.42 16 36 H 0.21 -1.91 8.06 -2.91 -0.02 -1.93 16 37 H 0.23 -1.78 7.46 -2.91 -0.02 -1.80 16 38 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.10 -0.36 8.12 -2.39 -0.02 -0.38 16 Total: 0.00 -24.23 335.54 -0.11 -24.33 By element: Atomic # 1 Polarization: -11.27 SS G_CDS: -0.18 Total: -11.45 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 5.27 Total: 9.53 kcal Atomic # 7 Polarization: -3.63 SS G_CDS: -3.81 Total: -7.44 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -3.58 Total: -13.27 kcal Atomic # 14 Polarization: -3.90 SS G_CDS: 2.19 Total: -1.70 kcal Total: -24.23 -0.11 -24.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_11618758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.320 kcal (2) G-P(sol) polarization free energy of solvation -24.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds