Wall clock time and date at job start Mon Mar 8 2021 04:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00261 * 2 1 4 4 H 1.09005 * 112.84905 * 341.19625 * 3 2 1 5 5 C 1.53780 * 113.69077 * 112.46426 * 3 2 1 6 6 C 1.53782 * 87.07973 * 139.99460 * 5 3 2 7 7 H 1.09001 * 113.69152 * 89.12279 * 6 5 3 8 8 N 1.46499 * 113.61688 * 220.01682 * 6 5 3 9 9 C 1.34777 * 120.00199 * 252.50182 * 8 6 5 10 10 O 1.21283 * 119.99750 * 359.97438 * 9 8 6 11 11 C 1.50702 * 119.99928 * 180.27479 * 9 8 6 12 12 C 1.50700 * 109.46869 * 179.72354 * 11 9 8 13 13 C 1.38233 * 119.99587 * 269.72348 * 12 11 9 14 14 C 1.38234 * 119.99743 * 179.77104 * 13 12 11 15 15 C 1.38236 * 119.99925 * 0.50201 * 14 13 12 16 16 C 1.50700 * 120.00186 * 179.72438 * 15 14 13 17 17 O 1.42902 * 109.46963 * 120.02388 * 16 15 14 18 18 Si 1.86299 * 109.47128 * 0.02562 * 16 15 14 19 19 C 1.38238 * 120.00255 * 359.75238 * 15 14 13 20 20 C 1.38233 * 119.99980 * 90.00014 * 12 11 9 21 21 C 1.53781 * 87.08318 * 334.56664 * 6 5 3 22 22 H 1.08996 * 109.47001 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46997 * 300.00219 * 1 2 3 24 24 H 1.08997 * 109.47119 * 59.99820 * 1 2 3 25 25 H 1.08993 * 113.61656 * 25.44783 * 5 3 2 26 26 H 1.09004 * 113.61428 * 254.54085 * 5 3 2 27 27 H 0.97000 * 119.99484 * 72.49279 * 8 6 5 28 28 H 1.09004 * 109.46965 * 299.72211 * 11 9 8 29 29 H 1.08994 * 109.46990 * 59.72065 * 11 9 8 30 30 H 1.07996 * 120.00354 * 359.97438 * 13 12 11 31 31 H 1.08005 * 120.00464 * 180.23067 * 14 13 12 32 32 H 1.08999 * 109.47633 * 240.02579 * 16 15 14 33 33 H 0.96702 * 114.00081 * 300.00252 * 17 16 15 34 34 H 1.48506 * 109.99834 * 58.68049 * 18 16 15 35 35 H 1.48502 * 110.00370 * 179.97438 * 18 16 15 36 36 H 1.07990 * 120.00467 * 179.97438 * 19 15 14 37 37 H 1.07998 * 120.00331 * 0.02562 * 20 12 11 38 38 H 1.08996 * 113.61616 * 139.97547 * 21 6 5 39 39 H 1.08990 * 113.61630 * 270.80129 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3138 2.0789 -0.3238 5 6 2.7532 1.6510 1.3013 6 6 3.8220 2.3199 0.4210 7 1 3.6222 3.3708 0.2116 8 7 5.1929 2.0819 0.8794 9 6 5.8938 3.0791 1.4547 10 8 5.3897 4.1736 1.5923 11 6 7.3062 2.8360 1.9206 12 6 7.8637 4.1030 2.5164 13 6 8.5354 5.0065 1.7143 14 6 9.0427 6.1710 2.2598 15 6 8.8873 6.4270 3.6094 16 6 9.4457 7.6935 4.2053 17 8 8.3839 8.4580 4.7800 18 14 10.2789 8.6925 2.8717 19 6 8.2201 5.5209 4.4124 20 6 7.7083 4.3589 3.8659 21 6 3.3756 1.3719 -0.7046 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 3.1169 0.7772 1.8417 26 1 2.2133 2.3504 1.9398 27 1 5.5961 1.2066 0.7691 28 1 7.3098 2.0481 2.6739 29 1 7.9209 2.5316 1.0736 30 1 8.6611 4.8043 0.6609 31 1 9.5643 6.8788 1.6325 32 1 10.1719 7.4421 4.9782 33 1 7.6994 8.7175 4.1481 34 1 9.3068 9.0148 1.7963 35 1 10.8334 9.9446 3.4464 36 1 8.0990 5.7207 5.4668 37 1 7.1878 3.6507 4.4934 38 1 3.3381 1.8458 -1.6854 39 1 3.9105 0.4223 -0.7135 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9984030_12335836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:08:40 Heat of formation + Delta-G solvation = -59.291896 kcal Electronic energy + Delta-G solvation = -20915.742605 eV Core-core repulsion = 17597.834512 eV Total energy + Delta-G solvation = -3317.908093 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.38901 -40.58361 -39.60473 -37.72495 -37.21868 -34.32739 -33.78846 -31.89602 -29.82627 -27.86701 -26.84391 -26.06496 -24.58308 -23.77154 -22.17535 -21.44685 -20.93083 -18.48798 -18.28789 -18.04356 -17.14824 -16.92496 -16.61100 -16.35106 -16.17289 -16.03781 -15.92392 -15.41843 -15.11224 -14.72100 -14.63785 -14.42786 -13.86379 -13.66923 -13.56869 -13.26350 -13.07210 -12.85187 -12.80992 -12.23775 -12.21610 -12.16355 -11.94809 -11.92145 -11.54560 -10.87643 -10.54161 -10.52796 -10.06015 -9.81693 -9.57761 -4.91995 0.28284 0.51289 1.33985 1.62948 1.65724 2.01317 2.06550 2.75985 2.91139 3.36582 3.42684 3.46512 3.58035 3.73272 3.76963 3.80157 3.88809 3.95903 4.06280 4.23800 4.25618 4.39164 4.40213 4.41348 4.50718 4.60325 4.62835 4.63951 4.71887 4.72821 4.85464 4.90184 4.98789 5.05484 5.11493 5.41847 5.46602 5.58856 5.62519 6.04421 6.16988 6.45580 6.46316 7.21935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.063 3.937 4 H 0.092 0.908 5 C -0.169 4.169 6 C 0.124 3.876 7 H 0.118 0.882 8 N -0.720 5.720 9 C 0.515 3.485 10 O -0.528 6.528 11 C -0.104 4.104 12 C -0.063 4.063 13 C -0.100 4.100 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.075 4.075 17 O -0.530 6.530 18 Si 0.684 3.316 19 C -0.091 4.091 20 C -0.104 4.104 21 C -0.144 4.144 22 H 0.087 0.913 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.403 0.597 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.377 0.623 34 H -0.261 1.261 35 H -0.258 1.258 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.102 -4.687 -2.701 5.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.005 3.995 4 H 0.110 0.890 5 C -0.208 4.208 6 C 0.019 3.981 7 H 0.136 0.864 8 N -0.372 5.372 9 C 0.302 3.698 10 O -0.404 6.404 11 C -0.144 4.144 12 C -0.063 4.063 13 C -0.118 4.118 14 C -0.132 4.132 15 C -0.118 4.118 16 C -0.184 4.184 17 O -0.337 6.337 18 Si 0.585 3.415 19 C -0.109 4.109 20 C -0.122 4.122 21 C -0.182 4.182 22 H 0.106 0.894 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.238 0.762 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.224 0.776 34 H -0.185 1.185 35 H -0.183 1.183 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.220 -3.371 -2.503 4.372 hybrid contribution -1.338 -0.083 0.132 1.347 sum -0.119 -3.453 -2.371 4.191 Atomic orbital electron populations 1.22831 0.80726 1.03079 1.00154 1.87937 1.20030 1.26861 1.94564 1.23459 0.93765 0.85786 0.96511 0.88992 1.24015 0.97544 1.01400 0.97800 1.22185 0.80698 1.00399 0.94810 0.86418 1.45933 1.14787 1.14404 1.62109 1.20633 0.87676 0.84340 0.77177 1.90752 1.71093 1.23942 1.54573 1.20704 0.93352 0.97504 1.02830 1.19266 0.97970 0.95310 0.93758 1.20906 0.97770 0.93667 0.99483 1.20938 1.00283 0.97646 0.94328 1.20270 1.00431 0.97129 0.93953 1.25029 0.93641 0.92930 1.06847 1.86585 1.35511 1.72737 1.38832 0.95096 0.86669 0.82163 0.77570 1.20958 0.96838 0.93069 1.00031 1.21017 0.99124 0.97547 0.94508 1.23621 0.95703 1.00401 0.98474 0.89437 0.93856 0.93796 0.88724 0.90650 0.76219 0.87637 0.87559 0.85780 0.85596 0.86441 0.77560 1.18546 1.18320 0.85634 0.86010 0.90007 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 101.05 1.10 1.07 16 2 O -0.38 -0.46 10.72 -35.23 -0.38 -0.84 16 3 C 0.06 -0.03 4.31 -25.92 -0.11 -0.15 16 4 H 0.09 -0.14 7.87 -51.93 -0.41 -0.55 16 5 C -0.17 0.06 7.71 -25.92 -0.20 -0.14 16 6 C 0.12 -0.07 4.24 -67.12 -0.28 -0.35 16 7 H 0.12 0.11 7.46 -51.93 -0.39 -0.28 16 8 N -0.72 0.96 5.35 -53.02 -0.28 0.68 16 9 C 0.52 0.49 7.82 -10.98 -0.09 0.40 16 10 O -0.53 -2.92 15.63 5.55 0.09 -2.83 16 11 C -0.10 0.18 5.83 -29.03 -0.17 0.01 16 12 C -0.06 -0.06 4.37 -104.63 -0.46 -0.51 16 13 C -0.10 -0.09 9.70 -39.58 -0.38 -0.47 16 14 C -0.11 -0.10 8.67 -39.58 -0.34 -0.45 16 15 C -0.12 -0.17 5.39 -104.62 -0.56 -0.74 16 16 C -0.07 -0.07 2.82 36.01 0.10 0.04 16 17 O -0.53 -1.35 12.77 -35.23 -0.45 -1.80 16 18 Si 0.68 -0.01 29.79 -169.99 -5.06 -5.07 16 19 C -0.09 -0.17 9.61 -39.58 -0.38 -0.55 16 20 C -0.10 -0.15 9.70 -39.58 -0.38 -0.53 16 21 C -0.14 0.22 7.66 -25.92 -0.20 0.02 16 22 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 23 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 24 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 25 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 26 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 27 H 0.40 -1.63 8.73 -40.82 -0.36 -1.98 16 28 H 0.11 -0.39 8.09 -51.93 -0.42 -0.81 16 29 H 0.11 -0.42 8.08 -51.93 -0.42 -0.84 16 30 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 31 H 0.13 -0.11 4.88 -52.48 -0.26 -0.36 16 32 H 0.12 -0.01 7.96 -51.93 -0.41 -0.42 16 33 H 0.38 0.05 8.70 45.56 0.40 0.44 16 34 H -0.26 -0.58 7.11 56.52 0.40 -0.18 16 35 H -0.26 -0.82 7.11 56.52 0.40 -0.42 16 36 H 0.13 0.17 8.06 -52.49 -0.42 -0.26 16 37 H 0.12 0.00 8.06 -52.49 -0.42 -0.42 16 38 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 39 H 0.10 -0.18 8.12 -51.93 -0.42 -0.60 16 LS Contribution 330.09 15.07 4.97 4.97 Total: 0.00 -8.29 330.09 -9.17 -17.46 By element: Atomic # 1 Polarization: -4.52 SS G_CDS: -5.69 Total: -10.21 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.37 Total: -2.35 kcal Atomic # 7 Polarization: 0.96 SS G_CDS: -0.28 Total: 0.68 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.74 Total: -5.48 kcal Atomic # 14 Polarization: -0.01 SS G_CDS: -5.06 Total: -5.07 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -8.29 -9.17 -17.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_12335836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.835 kcal (2) G-P(sol) polarization free energy of solvation -8.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds