Wall clock time and date at job start Mon Mar 8 2021 04:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00261 * 2 1 4 4 H 1.09005 * 112.84905 * 341.19625 * 3 2 1 5 5 C 1.53780 * 113.69077 * 112.46426 * 3 2 1 6 6 C 1.53782 * 87.07973 * 139.99460 * 5 3 2 7 7 H 1.09001 * 113.69152 * 89.12279 * 6 5 3 8 8 N 1.46499 * 113.61688 * 220.01682 * 6 5 3 9 9 C 1.34777 * 120.00199 * 252.50182 * 8 6 5 10 10 O 1.21283 * 119.99750 * 359.97438 * 9 8 6 11 11 C 1.50702 * 119.99928 * 180.27479 * 9 8 6 12 12 C 1.50700 * 109.46869 * 179.72354 * 11 9 8 13 13 C 1.38233 * 119.99587 * 269.72348 * 12 11 9 14 14 C 1.38234 * 119.99743 * 179.77104 * 13 12 11 15 15 C 1.38236 * 119.99925 * 0.50201 * 14 13 12 16 16 C 1.50700 * 120.00186 * 179.72438 * 15 14 13 17 17 O 1.42902 * 109.46963 * 120.02388 * 16 15 14 18 18 Si 1.86299 * 109.47128 * 0.02562 * 16 15 14 19 19 C 1.38238 * 120.00255 * 359.75238 * 15 14 13 20 20 C 1.38233 * 119.99980 * 90.00014 * 12 11 9 21 21 C 1.53781 * 87.08318 * 334.56664 * 6 5 3 22 22 H 1.08996 * 109.47001 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46997 * 300.00219 * 1 2 3 24 24 H 1.08997 * 109.47119 * 59.99820 * 1 2 3 25 25 H 1.08993 * 113.61656 * 25.44783 * 5 3 2 26 26 H 1.09004 * 113.61428 * 254.54085 * 5 3 2 27 27 H 0.97000 * 119.99484 * 72.49279 * 8 6 5 28 28 H 1.09004 * 109.46965 * 299.72211 * 11 9 8 29 29 H 1.08994 * 109.46990 * 59.72065 * 11 9 8 30 30 H 1.07996 * 120.00354 * 359.97438 * 13 12 11 31 31 H 1.08005 * 120.00464 * 180.23067 * 14 13 12 32 32 H 1.08999 * 109.47633 * 240.02579 * 16 15 14 33 33 H 0.96702 * 114.00081 * 300.00252 * 17 16 15 34 34 H 1.48506 * 109.99834 * 58.68049 * 18 16 15 35 35 H 1.48502 * 110.00370 * 179.97438 * 18 16 15 36 36 H 1.07990 * 120.00467 * 179.97438 * 19 15 14 37 37 H 1.07998 * 120.00331 * 0.02562 * 20 12 11 38 38 H 1.08996 * 113.61616 * 139.97547 * 21 6 5 39 39 H 1.08990 * 113.61630 * 270.80129 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3138 2.0789 -0.3238 5 6 2.7532 1.6510 1.3013 6 6 3.8220 2.3199 0.4210 7 1 3.6222 3.3708 0.2116 8 7 5.1929 2.0819 0.8794 9 6 5.8938 3.0791 1.4547 10 8 5.3897 4.1736 1.5923 11 6 7.3062 2.8360 1.9206 12 6 7.8637 4.1030 2.5164 13 6 8.5354 5.0065 1.7143 14 6 9.0427 6.1710 2.2598 15 6 8.8873 6.4270 3.6094 16 6 9.4457 7.6935 4.2053 17 8 8.3839 8.4580 4.7800 18 14 10.2789 8.6925 2.8717 19 6 8.2201 5.5209 4.4124 20 6 7.7083 4.3589 3.8659 21 6 3.3756 1.3719 -0.7046 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 3.1169 0.7772 1.8417 26 1 2.2133 2.3504 1.9398 27 1 5.5961 1.2066 0.7691 28 1 7.3098 2.0481 2.6739 29 1 7.9209 2.5316 1.0736 30 1 8.6611 4.8043 0.6609 31 1 9.5643 6.8788 1.6325 32 1 10.1719 7.4421 4.9782 33 1 7.6994 8.7175 4.1481 34 1 9.3068 9.0148 1.7963 35 1 10.8334 9.9446 3.4464 36 1 8.0990 5.7207 5.4668 37 1 7.1878 3.6507 4.4934 38 1 3.3381 1.8458 -1.6854 39 1 3.9105 0.4223 -0.7135 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_12335836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:08:40 Heat of formation + Delta-G solvation = -59.442841 kcal Electronic energy + Delta-G solvation = -20915.749151 eV Core-core repulsion = 17597.834512 eV Total energy + Delta-G solvation = -3317.914639 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.40099 -40.58601 -39.65362 -37.82278 -37.23680 -34.37432 -33.78360 -31.93056 -29.81337 -27.79497 -26.78180 -26.09283 -24.55575 -23.81053 -22.21329 -21.45071 -20.88971 -18.58074 -18.27986 -18.02993 -17.17020 -16.91401 -16.61095 -16.37856 -16.23473 -16.03852 -15.92245 -15.47907 -15.10466 -14.77718 -14.65191 -14.45691 -13.98342 -13.58851 -13.48987 -13.31946 -13.04102 -12.83561 -12.76929 -12.28779 -12.19903 -12.13518 -11.99880 -11.87515 -11.62884 -10.98284 -10.63279 -10.50101 -10.06291 -9.87103 -9.61541 -4.95761 0.24019 0.45842 1.29240 1.58801 1.60715 1.92725 2.11980 2.74710 2.96863 3.37855 3.42925 3.52662 3.61026 3.78638 3.79469 3.85653 3.91549 4.04978 4.06190 4.30554 4.36954 4.47507 4.50126 4.52234 4.54567 4.63693 4.70565 4.71254 4.72745 4.83371 4.92824 4.95169 5.00166 5.07904 5.09282 5.38293 5.50946 5.53322 5.59793 6.02219 6.22979 6.41994 6.55041 7.25349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.059 3.941 4 H 0.100 0.900 5 C -0.167 4.167 6 C 0.123 3.877 7 H 0.100 0.900 8 N -0.707 5.707 9 C 0.514 3.486 10 O -0.581 6.581 11 C -0.098 4.098 12 C -0.071 4.071 13 C -0.110 4.110 14 C -0.123 4.123 15 C -0.126 4.126 16 C -0.086 4.086 17 O -0.550 6.550 18 Si 0.773 3.227 19 C -0.108 4.108 20 C -0.117 4.117 21 C -0.132 4.132 22 H 0.093 0.907 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.419 0.581 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.125 0.875 33 H 0.384 0.616 34 H -0.289 1.289 35 H -0.302 1.302 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.089 0.911 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 -6.001 -3.616 7.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.001 3.999 4 H 0.117 0.883 5 C -0.206 4.206 6 C 0.018 3.982 7 H 0.118 0.882 8 N -0.359 5.359 9 C 0.302 3.698 10 O -0.461 6.461 11 C -0.138 4.138 12 C -0.071 4.071 13 C -0.128 4.128 14 C -0.140 4.140 15 C -0.126 4.126 16 C -0.194 4.194 17 O -0.358 6.358 18 Si 0.679 3.321 19 C -0.126 4.126 20 C -0.135 4.135 21 C -0.170 4.170 22 H 0.112 0.888 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.112 0.888 26 H 0.084 0.916 27 H 0.256 0.744 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.143 0.857 33 H 0.233 0.767 34 H -0.216 1.216 35 H -0.230 1.230 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.107 0.893 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.732 -4.753 -3.423 6.108 hybrid contribution -1.552 0.325 0.432 1.643 sum 0.180 -4.428 -2.990 5.346 Atomic orbital electron populations 1.22954 0.79889 1.03733 1.00709 1.87899 1.21117 1.27743 1.94679 1.23575 0.94367 0.85520 0.96477 0.88252 1.23983 0.97690 1.01073 0.97881 1.22075 0.81079 0.99704 0.95389 0.88160 1.45844 1.14332 1.14789 1.60976 1.21104 0.88549 0.83746 0.76439 1.90735 1.72373 1.26081 1.56881 1.20774 0.91662 0.96909 1.04405 1.19580 0.97595 0.96367 0.93584 1.21239 0.97500 0.93572 1.00501 1.21169 1.00413 0.98198 0.94262 1.20339 1.00741 0.97188 0.94336 1.25294 0.93448 0.93026 1.07658 1.86550 1.36274 1.73046 1.39957 0.94097 0.84064 0.79085 0.74883 1.21084 0.97610 0.93735 1.00169 1.21239 0.99302 0.97682 0.95276 1.23553 0.94857 1.00325 0.98283 0.88806 0.93590 0.92971 0.88827 0.91617 0.74380 0.85310 0.84663 0.83965 0.84157 0.85706 0.76693 1.21582 1.23046 0.85928 0.85158 0.89257 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.40 -0.89 10.72 -148.98 -1.60 -2.49 16 3 C 0.06 -0.07 4.31 31.12 0.13 0.07 16 4 H 0.10 -0.30 7.87 -2.38 -0.02 -0.32 16 5 C -0.17 0.05 7.71 31.12 0.24 0.29 16 6 C 0.12 -0.12 4.24 45.52 0.19 0.07 16 7 H 0.10 0.30 7.46 -2.39 -0.02 0.29 16 8 N -0.71 2.39 5.35 -440.03 -2.36 0.03 16 9 C 0.51 0.79 7.82 87.66 0.69 1.48 16 10 O -0.58 -6.97 15.63 -3.04 -0.05 -7.01 16 11 C -0.10 0.48 5.83 29.10 0.17 0.65 16 12 C -0.07 -0.10 4.37 -19.87 -0.09 -0.19 16 13 C -0.11 -0.14 9.70 22.27 0.22 0.08 16 14 C -0.12 -0.22 8.67 22.27 0.19 -0.03 16 15 C -0.13 -0.45 5.39 -19.86 -0.11 -0.55 16 16 C -0.09 -0.21 2.82 71.24 0.20 -0.01 16 17 O -0.55 -3.43 12.77 -148.98 -1.90 -5.34 16 18 Si 0.77 0.27 29.79 68.60 2.04 2.32 16 19 C -0.11 -0.51 9.61 22.27 0.21 -0.30 16 20 C -0.12 -0.39 9.70 22.27 0.22 -0.17 16 21 C -0.13 0.49 7.66 31.12 0.24 0.73 16 22 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 23 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 24 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 25 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 26 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.42 -4.05 8.73 -92.71 -0.81 -4.86 16 28 H 0.13 -1.22 8.09 -2.38 -0.02 -1.24 16 29 H 0.14 -1.44 8.08 -2.39 -0.02 -1.46 16 30 H 0.14 -0.45 8.06 -2.91 -0.02 -0.48 16 31 H 0.14 -0.30 4.88 -2.91 -0.01 -0.31 16 32 H 0.13 0.05 7.96 -2.39 -0.02 0.03 16 33 H 0.38 0.62 8.70 -74.06 -0.64 -0.02 16 34 H -0.29 -1.43 7.11 99.48 0.71 -0.72 16 35 H -0.30 -2.31 7.11 99.48 0.71 -1.61 16 36 H 0.12 0.52 8.06 -2.92 -0.02 0.50 16 37 H 0.13 0.06 8.06 -2.91 -0.02 0.03 16 38 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.10 -0.52 8.12 -2.39 -0.02 -0.54 16 Total: 0.00 -20.57 330.09 -0.48 -21.05 By element: Atomic # 1 Polarization: -11.50 SS G_CDS: -0.35 Total: -11.86 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 3.74 Total: 3.30 kcal Atomic # 7 Polarization: 2.39 SS G_CDS: -2.36 Total: 0.03 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -3.55 Total: -14.84 kcal Atomic # 14 Polarization: 0.27 SS G_CDS: 2.04 Total: 2.32 kcal Total: -20.57 -0.48 -21.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_12335836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.395 kcal (2) G-P(sol) polarization free energy of solvation -20.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds