Wall clock time and date at job start Mon Mar 8 2021 04:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00425 * 2 1 4 4 H 1.09001 * 112.90387 * 341.25378 * 3 2 1 5 5 C 1.53785 * 113.61652 * 112.50118 * 3 2 1 6 6 C 1.53782 * 87.07877 * 139.98257 * 5 3 2 7 7 H 1.08996 * 113.68851 * 89.12960 * 6 5 3 8 8 N 1.46493 * 113.61105 * 220.01974 * 6 5 3 9 9 C 1.34783 * 120.00174 * 252.49882 * 8 6 5 10 10 O 1.21597 * 119.99426 * 0.02562 * 9 8 6 11 11 C 1.47571 * 120.00534 * 180.02562 * 9 8 6 12 12 C 1.40202 * 119.83021 * 0.02562 * 11 9 8 13 13 C 1.36238 * 120.38102 * 180.02562 * 12 11 9 14 14 C 1.39878 * 119.95479 * 359.73310 * 13 12 11 15 15 C 1.46261 * 133.83500 * 179.62678 * 14 13 12 16 16 C 1.50699 * 126.48357 * 0.68293 * 15 14 13 17 17 O 1.42894 * 109.47188 * 74.71406 * 16 15 14 18 18 Si 1.86298 * 109.46950 * 194.72079 * 16 15 14 19 19 C 1.34462 * 107.03252 * 180.42795 * 15 14 13 20 20 N 1.36562 * 109.98239 * 0.21917 * 19 15 14 21 21 C 1.37828 * 109.86570 * 0.02562 * 20 19 15 22 22 C 1.38640 * 133.38349 * 180.02562 * 21 20 19 23 23 C 1.53779 * 87.08397 * 334.56872 * 6 5 3 24 24 H 1.09000 * 109.47674 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47016 * 300.00527 * 1 2 3 26 26 H 1.09001 * 109.47206 * 60.00186 * 1 2 3 27 27 H 1.08997 * 113.61154 * 25.43455 * 5 3 2 28 28 H 1.08995 * 113.61106 * 254.53318 * 5 3 2 29 29 H 0.97003 * 120.00791 * 72.49770 * 8 6 5 30 30 H 1.08000 * 119.81489 * 0.02562 * 12 11 9 31 31 H 1.07994 * 120.02105 * 180.02562 * 13 12 11 32 32 H 1.09006 * 109.46662 * 314.71675 * 16 15 14 33 33 H 0.96709 * 113.99337 * 60.00344 * 17 16 15 34 34 H 1.48506 * 109.99834 * 180.02562 * 18 16 15 35 35 H 1.48502 * 110.00011 * 301.31529 * 18 16 15 36 36 H 1.07996 * 125.00412 * 180.22711 * 19 15 14 37 37 H 0.97004 * 125.06623 * 179.97438 * 20 19 15 38 38 H 1.08008 * 120.16602 * 0.02562 * 22 21 20 39 39 H 1.08994 * 113.61742 * 139.98003 * 23 6 5 40 40 H 1.08996 * 113.61324 * 270.88627 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3143 2.0797 -0.3227 5 6 2.7535 1.6488 1.3018 6 6 3.8228 2.3180 0.4222 7 1 3.6237 3.3693 0.2143 8 7 5.1935 2.0784 0.8803 9 6 5.8952 3.0743 1.4568 10 8 5.3903 4.1716 1.5970 11 6 7.2761 2.8332 1.9178 12 6 7.8550 1.5668 1.7539 13 6 9.1289 1.3317 2.1758 14 6 9.8682 2.3589 2.7713 15 6 11.2184 2.4443 3.3271 16 6 12.2368 1.3348 3.3814 17 8 12.7840 1.1262 2.0780 18 14 13.6015 1.8019 4.5605 19 6 11.3812 3.7016 3.7751 20 7 10.2443 4.4259 3.5561 21 6 9.2950 3.6344 2.9462 22 6 7.9981 3.8650 2.5137 23 6 3.3756 1.3718 -0.7045 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.1167 0.7740 1.8410 28 1 2.2141 2.3476 1.9411 29 1 5.5962 1.2030 0.7688 30 1 7.2879 0.7731 1.2904 31 1 9.5692 0.3541 2.0463 32 1 11.7574 0.4182 3.7253 33 1 13.2270 1.9024 1.7086 34 1 14.6128 0.7161 4.6226 35 1 14.2422 3.0672 4.1203 36 1 12.2787 4.0824 4.2397 37 1 10.1229 5.3582 3.7948 38 1 7.5500 4.8400 2.6372 39 1 3.3384 1.8469 -1.6848 40 1 3.9088 0.4212 -0.7137 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_12335838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:08:43 Heat of formation + Delta-G solvation = -19.732298 kcal Electronic energy + Delta-G solvation = -23716.975764 eV Core-core repulsion = 20078.904912 eV Total energy + Delta-G solvation = -3638.070852 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.46776 -41.29980 -39.93368 -37.99805 -37.55128 -37.23427 -34.28773 -33.26198 -30.73506 -30.58720 -27.80586 -26.78317 -26.52487 -25.68569 -23.82379 -23.63948 -21.56679 -21.06732 -20.74259 -19.40082 -18.38416 -18.30304 -17.52723 -16.98111 -16.89252 -16.55328 -16.33266 -16.12163 -15.80216 -15.65908 -15.44864 -15.08261 -14.95828 -14.78082 -14.75909 -14.35613 -13.89179 -13.53331 -13.47047 -13.09801 -12.74185 -12.65192 -12.49027 -12.25996 -12.15395 -12.13916 -11.85936 -11.76791 -11.10875 -10.79096 -10.48484 -10.44678 -10.15008 -9.36936 -8.79994 -4.82935 -0.33141 0.37149 1.38354 1.40423 1.64718 1.86866 1.88314 2.05258 2.22584 2.85687 2.93568 3.41318 3.53170 3.56245 3.61247 3.70695 3.80088 3.86233 3.88503 3.91272 4.11778 4.27516 4.32272 4.48951 4.49707 4.54868 4.56504 4.59897 4.71029 4.71800 4.80238 4.85419 4.93743 4.94993 4.97679 5.02412 5.21394 5.41005 5.42845 5.52787 5.61543 5.97933 6.25197 6.44512 6.51904 6.62740 7.10395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.062 3.938 4 H 0.104 0.896 5 C -0.167 4.167 6 C 0.121 3.879 7 H 0.107 0.893 8 N -0.700 5.700 9 C 0.563 3.437 10 O -0.582 6.582 11 C -0.137 4.137 12 C -0.108 4.108 13 C -0.083 4.083 14 C -0.080 4.080 15 C -0.225 4.225 16 C -0.049 4.049 17 O -0.554 6.554 18 Si 0.774 3.226 19 C 0.091 3.909 20 N -0.577 5.577 21 C 0.067 3.933 22 C -0.066 4.066 23 C -0.134 4.134 24 H 0.093 0.907 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.415 0.585 30 H 0.150 0.850 31 H 0.139 0.861 32 H 0.113 0.887 33 H 0.384 0.616 34 H -0.309 1.309 35 H -0.268 1.268 36 H 0.208 0.792 37 H 0.434 0.566 38 H 0.129 0.871 39 H 0.092 0.908 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 0.032 1.991 2.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.004 3.996 4 H 0.122 0.878 5 C -0.206 4.206 6 C 0.016 3.984 7 H 0.125 0.875 8 N -0.352 5.352 9 C 0.352 3.648 10 O -0.463 6.463 11 C -0.141 4.141 12 C -0.128 4.128 13 C -0.102 4.102 14 C -0.085 4.085 15 C -0.232 4.232 16 C -0.158 4.158 17 O -0.361 6.361 18 Si 0.678 3.322 19 C -0.039 4.039 20 N -0.180 5.180 21 C -0.040 4.040 22 C -0.087 4.087 23 C -0.172 4.172 24 H 0.111 0.889 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.089 0.911 29 H 0.253 0.747 30 H 0.168 0.832 31 H 0.157 0.843 32 H 0.131 0.869 33 H 0.233 0.767 34 H -0.237 1.237 35 H -0.194 1.194 36 H 0.224 0.776 37 H 0.275 0.725 38 H 0.147 0.853 39 H 0.110 0.890 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.114 0.336 2.297 2.575 hybrid contribution -0.063 0.574 -1.107 1.249 sum 1.051 0.911 1.190 1.830 Atomic orbital electron populations 1.22961 0.79826 1.03720 1.00789 1.87903 1.21184 1.27722 1.94659 1.23547 0.94225 0.85638 0.96204 0.87795 1.23991 0.97457 1.01131 0.97996 1.22210 0.80236 1.00247 0.95710 0.87467 1.45734 1.14647 1.14387 1.60397 1.18417 0.85759 0.83863 0.76742 1.90757 1.72032 1.25555 1.57961 1.19453 0.93708 0.95505 1.05478 1.20900 0.95638 0.95518 1.00696 1.20406 0.93503 0.98858 0.97406 1.19553 0.94653 0.93157 1.01116 1.20762 0.95315 0.96423 1.10697 1.24574 1.00722 0.99658 0.90831 1.86576 1.75616 1.41833 1.32115 0.94149 0.75530 0.76893 0.85583 1.22293 0.91181 0.90896 0.99506 1.41798 1.10953 1.13611 1.51615 1.18114 0.91751 0.91984 1.02103 1.20127 0.91077 0.99606 0.97905 1.23578 0.95076 1.00230 0.98345 0.88879 0.93464 0.92904 0.88973 0.91050 0.74656 0.83218 0.84285 0.86895 0.76744 1.23728 1.19413 0.77596 0.72545 0.85295 0.88987 0.87921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.40 -1.19 10.71 -148.98 -1.60 -2.79 16 3 C 0.06 -0.02 4.31 31.12 0.13 0.11 16 4 H 0.10 -0.30 7.87 -2.39 -0.02 -0.32 16 5 C -0.17 -0.16 7.71 31.12 0.24 0.08 16 6 C 0.12 0.14 4.24 45.52 0.19 0.34 16 7 H 0.11 0.44 7.46 -2.39 -0.02 0.42 16 8 N -0.70 -1.05 5.30 -443.17 -2.35 -3.40 16 9 C 0.56 4.35 7.76 86.71 0.67 5.02 16 10 O -0.58 -8.88 15.91 -4.02 -0.06 -8.95 16 11 C -0.14 -0.74 5.87 -20.08 -0.12 -0.86 16 12 C -0.11 -0.13 9.46 22.28 0.21 0.08 16 13 C -0.08 -0.20 10.03 22.20 0.22 0.02 16 14 C -0.08 -0.29 6.35 -20.14 -0.13 -0.42 16 15 C -0.22 0.10 5.57 -18.64 -0.10 0.00 16 16 C -0.05 0.07 3.06 71.24 0.22 0.28 16 17 O -0.55 -1.31 12.88 -148.98 -1.92 -3.23 16 18 Si 0.77 -3.59 30.82 68.60 2.11 -1.48 16 19 C 0.09 -0.43 10.43 83.09 0.87 0.44 16 20 N -0.58 1.75 6.07 -187.72 -1.14 0.61 16 21 C 0.07 0.22 7.26 38.96 0.28 0.50 16 22 C -0.07 -0.38 9.61 22.63 0.22 -0.16 16 23 C -0.13 0.27 7.66 31.12 0.24 0.51 16 24 H 0.09 -0.30 8.14 -2.39 -0.02 -0.31 16 25 H 0.05 -0.12 8.14 -2.38 -0.02 -0.14 16 26 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.41 -1.58 6.72 -92.71 -0.62 -2.20 16 30 H 0.15 -0.74 6.36 -2.91 -0.02 -0.75 16 31 H 0.14 0.00 8.06 -2.91 -0.02 -0.02 16 32 H 0.11 -0.18 7.96 -2.38 -0.02 -0.19 16 33 H 0.38 -1.32 8.70 -74.05 -0.64 -1.97 16 34 H -0.31 -1.34 7.11 99.48 0.71 -0.63 16 35 H -0.27 0.88 7.00 99.48 0.70 1.57 16 36 H 0.21 -2.38 6.27 -2.91 -0.02 -2.40 16 37 H 0.43 -3.70 8.96 -92.71 -0.83 -4.53 16 38 H 0.13 0.79 7.62 -2.91 -0.02 0.77 16 39 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.10 -0.29 8.12 -2.39 -0.02 -0.31 16 Total: 0.00 -21.90 338.92 -1.55 -23.44 By element: Atomic # 1 Polarization: -10.37 SS G_CDS: -0.97 Total: -11.34 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 4.38 Total: 7.14 kcal Atomic # 7 Polarization: 0.69 SS G_CDS: -3.49 Total: -2.80 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -3.58 Total: -14.97 kcal Atomic # 14 Polarization: -3.59 SS G_CDS: 2.11 Total: -1.48 kcal Total: -21.90 -1.55 -23.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_12335838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.710 kcal (2) G-P(sol) polarization free energy of solvation -21.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds