Wall clock time and date at job start Mon Mar 8 2021 04:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00106 * 2 1 4 4 H 1.09001 * 112.85109 * 18.80561 * 3 2 1 5 5 C 1.53781 * 113.61590 * 149.99835 * 3 2 1 6 6 C 1.53781 * 87.08257 * 140.06595 * 5 3 2 7 7 H 1.09001 * 113.61551 * 89.20116 * 6 5 3 8 8 N 1.46500 * 113.61779 * 220.01917 * 6 5 3 9 9 C 1.34770 * 120.00275 * 203.46626 * 8 6 5 10 10 O 1.21283 * 120.00191 * 0.02562 * 9 8 6 11 11 C 1.50706 * 120.00088 * 179.97438 * 9 8 6 12 12 C 1.50701 * 109.47152 * 180.02562 * 11 9 8 13 13 C 1.38275 * 119.93612 * 90.00221 * 12 11 9 14 14 C 1.38122 * 120.06800 * 179.97438 * 13 12 11 15 15 C 1.38830 * 119.92834 * 359.97438 * 14 13 12 16 16 N 1.40195 * 120.06093 * 179.97438 * 15 14 13 17 17 C 1.36574 * 125.67229 * 295.04242 * 16 15 14 18 18 C 1.50705 * 125.89351 * 359.96545 * 17 16 15 19 19 C 1.34841 * 108.20493 * 179.68741 * 17 16 15 20 20 C 1.40950 * 107.46730 * 0.43130 * 19 17 16 21 21 C 1.50699 * 126.26639 * 179.82960 * 20 19 17 22 22 O 1.42892 * 109.47249 * 104.69148 * 21 20 19 23 23 Si 1.86298 * 109.47032 * 344.68534 * 21 20 19 24 24 C 1.34847 * 107.46260 * 359.56902 * 20 19 17 25 25 C 1.50708 * 125.89511 * 180.26513 * 24 20 19 26 26 C 1.38821 * 119.87026 * 0.25442 * 15 14 13 27 27 C 1.38122 * 119.93774 * 359.49232 * 26 15 14 28 28 C 1.53780 * 87.17269 * 334.60951 * 6 5 3 29 29 H 1.09001 * 109.46561 * 60.00050 * 1 2 3 30 30 H 1.09001 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46744 * 300.00021 * 1 2 3 32 32 H 1.09001 * 113.61575 * 25.51873 * 5 3 2 33 33 H 1.09002 * 113.69047 * 254.62441 * 5 3 2 34 34 H 0.97009 * 119.99744 * 23.47375 * 8 6 5 35 35 H 1.09001 * 109.46853 * 60.00133 * 11 9 8 36 36 H 1.09004 * 109.47381 * 300.00748 * 11 9 8 37 37 H 1.08002 * 119.96500 * 359.95823 * 13 12 11 38 38 H 1.07995 * 120.03552 * 179.97438 * 14 13 12 39 39 H 1.08998 * 109.47462 * 90.00511 * 18 17 16 40 40 H 1.09007 * 109.46907 * 210.00021 * 18 17 16 41 41 H 1.08995 * 109.47318 * 329.99870 * 18 17 16 42 42 H 1.07997 * 126.27266 * 180.25599 * 19 17 16 43 43 H 1.09004 * 109.46453 * 224.69217 * 21 20 19 44 44 H 0.96703 * 114.00176 * 299.99748 * 22 21 20 45 45 H 1.48506 * 109.99834 * 58.68765 * 23 21 20 46 46 H 1.48502 * 110.00011 * 180.02562 * 23 21 20 47 47 H 1.08993 * 109.47150 * 90.02470 * 25 24 20 48 48 H 1.09001 * 109.46338 * 210.01983 * 25 24 20 49 49 H 1.09001 * 109.47175 * 330.01893 * 25 24 20 50 50 H 1.08003 * 120.02794 * 179.72099 * 26 15 14 51 51 H 1.07992 * 119.96745 * 180.25284 * 27 26 15 52 52 H 1.09000 * 113.61668 * 139.93723 * 28 6 5 53 53 H 1.09000 * 113.62069 * 270.83910 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0789 0.3238 5 6 3.3756 1.3719 0.7045 6 6 3.8221 2.3199 -0.4210 7 1 3.6222 3.3708 -0.2117 8 7 5.1930 2.0819 -0.8795 9 6 5.8830 3.0701 -1.4825 10 8 5.3692 4.1566 -1.6453 11 6 7.2934 2.8254 -1.9537 12 6 7.8360 4.0802 -2.5879 13 6 8.5022 5.0122 -1.8135 14 6 9.0010 6.1630 -2.3920 15 6 8.8335 6.3831 -3.7525 16 7 9.3382 7.5504 -4.3425 17 6 8.9182 8.8226 -4.0772 18 6 7.8352 9.2106 -3.1036 19 6 9.6438 9.6719 -4.8324 20 6 10.5380 8.8978 -5.5992 21 6 11.5440 9.4202 -6.5922 22 8 12.8532 9.3543 -6.0235 23 14 11.1386 11.1888 -7.0148 24 6 10.3323 7.6045 -5.2773 25 6 11.0718 6.4230 -5.8503 26 6 8.1601 5.4478 -4.5264 27 6 7.6680 4.2964 -3.9432 28 6 2.7531 1.6533 -1.3029 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9095 0.4216 0.7125 33 1 3.3395 1.8454 1.6857 34 1 5.6040 1.2129 -0.7491 35 1 7.2971 2.0173 -2.6852 36 1 7.9176 2.5490 -1.1039 37 1 8.6323 4.8403 -0.7552 38 1 9.5209 6.8908 -1.7867 39 1 8.2741 9.3793 -2.1202 40 1 7.3491 10.1242 -3.4460 41 1 7.0993 8.4091 -3.0404 42 1 9.5543 10.7480 -4.8491 43 1 11.5099 8.8135 -7.4972 44 1 12.9566 9.8721 -5.2133 45 1 11.1504 12.0204 -5.7845 46 1 12.1232 11.7155 -7.9938 47 1 11.9497 6.2129 -5.2395 48 1 10.4163 5.5521 -5.8559 49 1 11.3841 6.6493 -6.8698 50 1 8.0243 5.6186 -5.5842 51 1 7.1477 3.5666 -4.5456 52 1 2.2138 2.3540 -1.9403 53 1 3.1164 0.7801 -1.8448 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_12335864.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:08:59 Heat of formation + Delta-G solvation = -6.874167 kcal Electronic energy + Delta-G solvation = -32869.887766 eV Core-core repulsion = 28481.997867 eV Total energy + Delta-G solvation = -4387.889898 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.193 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.85696 -41.35936 -40.35309 -39.45832 -37.85452 -37.26006 -34.90319 -34.16999 -33.71951 -32.09825 -32.00013 -30.15530 -28.70829 -27.75187 -26.90572 -26.74504 -25.00898 -24.42221 -23.96235 -23.00895 -21.55723 -21.06365 -20.88860 -20.34043 -18.29824 -18.13804 -17.98685 -17.59984 -17.17893 -17.03623 -16.61608 -16.36292 -16.09040 -15.97405 -15.70834 -15.65795 -15.50643 -15.04846 -14.98491 -14.69736 -14.57883 -14.51801 -14.31373 -14.12070 -14.01478 -13.59903 -13.48811 -13.47836 -13.42774 -13.23141 -13.11991 -12.85824 -12.79915 -12.75782 -12.58986 -12.18654 -12.14861 -12.13048 -12.06669 -11.86463 -11.69769 -10.99735 -10.49543 -10.48736 -10.14278 -10.08293 -10.05472 -9.39866 -8.84443 -4.84726 -0.06128 0.26477 1.12524 1.42753 1.60434 1.67036 1.75982 1.82902 2.02468 2.08552 2.60383 2.96064 3.42928 3.53661 3.56206 3.57704 3.72151 3.73809 3.79734 3.83792 3.85870 3.97754 4.00899 4.12333 4.22023 4.27135 4.31029 4.33247 4.42235 4.50379 4.52843 4.53137 4.56303 4.58059 4.63816 4.66378 4.70944 4.71809 4.72677 4.76445 4.84244 4.91256 4.93844 4.96064 4.99266 5.00934 5.06084 5.08870 5.15897 5.27344 5.35729 5.44145 5.51107 5.73260 5.98437 6.16773 6.23747 6.50066 6.54651 6.57222 7.24820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.058 3.942 4 H 0.100 0.900 5 C -0.133 4.133 6 C 0.124 3.876 7 H 0.101 0.899 8 N -0.707 5.707 9 C 0.515 3.485 10 O -0.579 6.579 11 C -0.100 4.100 12 C -0.061 4.061 13 C -0.096 4.096 14 C -0.117 4.117 15 C 0.100 3.900 16 N -0.403 5.403 17 C 0.014 3.986 18 C -0.082 4.082 19 C -0.200 4.200 20 C -0.203 4.203 21 C -0.045 4.045 22 O -0.551 6.551 23 Si 0.772 3.228 24 C 0.038 3.962 25 C -0.080 4.080 26 C -0.116 4.116 27 C -0.096 4.096 28 C -0.167 4.167 29 H 0.046 0.954 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.418 0.582 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.151 0.849 43 H 0.115 0.885 44 H 0.381 0.619 45 H -0.287 1.287 46 H -0.302 1.302 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.088 0.912 50 H 0.130 0.870 51 H 0.147 0.853 52 H 0.066 0.934 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 -6.245 2.933 7.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.000 4.000 4 H 0.117 0.883 5 C -0.171 4.171 6 C 0.019 3.981 7 H 0.119 0.881 8 N -0.359 5.359 9 C 0.303 3.697 10 O -0.458 6.458 11 C -0.139 4.139 12 C -0.062 4.062 13 C -0.115 4.115 14 C -0.136 4.136 15 C 0.011 3.989 16 N -0.077 5.077 17 C -0.094 4.094 18 C -0.139 4.139 19 C -0.224 4.224 20 C -0.209 4.209 21 C -0.155 4.155 22 O -0.359 6.359 23 Si 0.678 3.322 24 C -0.072 4.072 25 C -0.138 4.138 26 C -0.135 4.135 27 C -0.115 4.115 28 C -0.206 4.206 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.256 0.744 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.144 0.856 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.168 0.832 43 H 0.132 0.868 44 H 0.230 0.770 45 H -0.214 1.214 46 H -0.231 1.231 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.106 0.894 50 H 0.148 0.852 51 H 0.165 0.835 52 H 0.085 0.915 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.711 -5.486 2.465 7.067 hybrid contribution 0.628 0.000 0.931 1.123 sum -3.083 -5.485 3.396 7.150 Atomic orbital electron populations 1.22956 0.79876 1.03721 1.00728 1.87897 1.21129 1.27788 1.94681 1.23617 0.94377 0.85502 0.96548 0.88255 1.23551 0.94892 1.00322 0.98310 1.22072 0.81041 0.99711 0.95307 0.88080 1.45843 1.14456 1.15726 1.59915 1.21018 0.88433 0.83643 0.76643 1.90746 1.71765 1.26290 1.57047 1.20796 0.91964 0.96853 1.04265 1.19644 0.96832 0.96183 0.93516 1.21138 0.97002 0.92596 1.00743 1.21200 1.00553 0.98594 0.93272 1.17826 1.00522 0.87666 0.92860 1.41554 1.29048 1.04385 1.32718 1.20748 1.02296 0.82531 1.03855 1.20349 0.94425 1.02456 0.96684 1.20772 1.00591 0.99181 1.01821 1.19674 1.03605 0.92448 1.05217 1.24451 0.81538 1.12870 0.96617 1.86527 1.30409 1.73429 1.45529 0.93837 0.87120 0.72194 0.79040 1.20579 0.94013 0.96995 0.95597 1.20329 0.98697 0.93383 1.01363 1.21232 0.97512 0.94338 1.00463 1.21155 0.98419 0.96987 0.94894 1.24007 0.97668 1.01072 0.97819 0.93535 0.88846 0.92981 0.87776 0.89253 0.74392 0.84747 0.84681 0.83588 0.85605 0.90571 0.88649 0.92551 0.83185 0.86764 0.76997 1.21382 1.23074 0.91386 0.91257 0.89352 0.85172 0.83530 0.91513 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.40 -0.62 10.72 -148.98 -1.60 -2.22 16 3 C 0.06 -0.12 4.31 31.18 0.13 0.02 16 4 H 0.10 -0.39 7.87 -2.39 -0.02 -0.41 16 5 C -0.13 0.63 7.66 31.12 0.24 0.86 16 6 C 0.12 -0.30 4.21 45.52 0.19 -0.11 16 7 H 0.10 0.14 7.50 -2.39 -0.02 0.12 16 8 N -0.71 3.57 5.36 -440.04 -2.36 1.21 16 9 C 0.51 -0.33 7.82 87.66 0.69 0.36 16 10 O -0.58 -5.55 15.65 -3.04 -0.05 -5.59 16 11 C -0.10 0.71 5.83 29.10 0.17 0.88 16 12 C -0.06 0.05 4.37 -19.85 -0.09 -0.03 16 13 C -0.10 -0.05 9.69 22.25 0.22 0.17 16 14 C -0.12 -0.43 9.73 22.38 0.22 -0.22 16 15 C 0.10 0.54 4.83 38.08 0.18 0.73 16 16 N -0.40 -2.86 2.79 -320.25 -0.89 -3.76 16 17 C 0.01 0.10 6.81 41.04 0.28 0.38 16 18 C -0.08 -0.23 9.93 71.24 0.71 0.48 16 19 C -0.20 -1.23 9.27 22.15 0.21 -1.03 16 20 C -0.20 -1.31 5.35 -19.98 -0.11 -1.42 16 21 C -0.05 -0.20 2.60 71.24 0.19 -0.02 16 22 O -0.55 -3.88 12.88 -148.98 -1.92 -5.80 16 23 Si 0.77 2.09 30.87 68.60 2.12 4.21 16 24 C 0.04 0.27 6.81 41.04 0.28 0.55 16 25 C -0.08 -0.27 9.87 71.24 0.70 0.43 16 26 C -0.12 -0.39 8.80 22.38 0.20 -0.19 16 27 C -0.10 -0.03 9.69 22.25 0.22 0.18 16 28 C -0.17 0.25 7.73 31.18 0.24 0.49 16 29 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.10 -0.61 8.11 -2.39 -0.02 -0.63 16 33 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.42 -4.67 8.71 -92.70 -0.81 -5.48 16 35 H 0.13 -1.65 8.08 -2.39 -0.02 -1.66 16 36 H 0.14 -1.68 8.08 -2.38 -0.02 -1.69 16 37 H 0.15 -0.53 8.06 -2.91 -0.02 -0.55 16 38 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 39 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.09 -0.02 8.14 -2.38 -0.02 -0.04 16 41 H 0.06 0.27 7.83 -2.39 -0.02 0.25 16 42 H 0.15 0.51 6.53 -2.91 -0.02 0.49 16 43 H 0.11 0.30 7.50 -2.38 -0.02 0.29 16 44 H 0.38 0.91 8.70 -74.06 -0.64 0.26 16 45 H -0.29 -1.94 7.01 99.48 0.70 -1.24 16 46 H -0.30 -2.79 7.11 99.48 0.71 -2.09 16 47 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 48 H 0.07 0.13 6.86 -2.39 -0.02 0.11 16 49 H 0.09 0.16 7.50 -2.39 -0.02 0.14 16 50 H 0.13 0.31 8.06 -2.91 -0.02 0.29 16 51 H 0.15 -0.55 8.06 -2.91 -0.02 -0.58 16 52 H 0.07 0.01 8.14 -2.39 -0.02 0.00 16 53 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: 0.00 -22.39 437.36 0.89 -21.50 By element: Atomic # 1 Polarization: -12.72 SS G_CDS: -0.50 Total: -13.22 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 6.09 Total: 3.68 kcal Atomic # 7 Polarization: 0.70 SS G_CDS: -3.25 Total: -2.55 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -3.56 Total: -13.61 kcal Atomic # 14 Polarization: 2.09 SS G_CDS: 2.12 Total: 4.21 kcal Total: -22.39 0.89 -21.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_12335864.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.626 kcal (2) G-P(sol) polarization free energy of solvation -22.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds