Wall clock time and date at job start Mon Mar 8 2021 04:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46864 * 2 1 4 4 C 1.53001 * 109.47286 * 294.99831 * 3 2 1 5 5 C 1.53002 * 109.46793 * 174.99805 * 3 2 1 6 6 C 1.50702 * 109.46792 * 184.58103 * 5 3 2 7 7 O 1.21281 * 120.00288 * 37.71982 * 6 5 3 8 8 N 1.34775 * 120.00184 * 217.71216 * 6 5 3 9 9 C 1.46500 * 120.00473 * 175.17576 * 8 6 5 10 10 H 1.09005 * 112.84438 * 23.79857 * 9 8 6 11 11 C 1.53780 * 113.62066 * 154.99997 * 9 8 6 12 12 C 1.53775 * 87.08079 * 139.97888 * 11 9 8 13 13 H 1.09004 * 113.61498 * 89.20342 * 12 11 9 14 14 O 1.42903 * 113.61352 * 220.01786 * 12 11 9 15 15 C 1.42902 * 114.00054 * 209.99944 * 14 12 11 16 16 C 1.53783 * 113.60909 * 252.50058 * 9 8 6 17 17 N 1.46491 * 109.47515 * 304.58436 * 5 3 2 18 18 C 1.36341 * 125.63842 * 299.69773 * 17 5 3 19 19 C 1.34852 * 108.21865 * 179.83033 * 18 17 5 20 20 C 1.40885 * 107.41867 * 0.42119 * 19 18 17 21 21 C 1.34849 * 107.41835 * 359.73621 * 20 19 18 22 22 C 1.50697 * 125.89512 * 180.02562 * 21 20 19 23 23 O 1.42893 * 109.47612 * 209.97749 * 22 21 20 24 24 Si 1.86304 * 109.47014 * 329.97926 * 22 21 20 25 25 H 1.09001 * 109.46944 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47250 * 299.99433 * 1 2 3 27 27 H 1.09000 * 109.47486 * 60.00063 * 1 2 3 28 28 H 1.09002 * 109.46968 * 239.99838 * 2 1 3 29 29 H 1.09001 * 109.46966 * 120.00014 * 2 1 3 30 30 H 1.08999 * 109.47421 * 55.00410 * 3 2 1 31 31 H 1.08997 * 109.46986 * 180.72642 * 4 3 2 32 32 H 1.08993 * 109.47039 * 300.73094 * 4 3 2 33 33 H 1.09005 * 109.46598 * 60.72730 * 4 3 2 34 34 H 1.09005 * 109.46750 * 64.59070 * 5 3 2 35 35 H 0.97011 * 119.99949 * 355.16993 * 8 6 5 36 36 H 1.09004 * 113.61178 * 25.42715 * 11 9 8 37 37 H 1.08996 * 113.69043 * 254.53912 * 11 9 8 38 38 H 1.08995 * 109.46741 * 60.00374 * 15 14 12 39 39 H 1.08993 * 109.47278 * 300.00361 * 15 14 12 40 40 H 1.09002 * 109.46864 * 180.02562 * 15 14 12 41 41 H 1.08998 * 113.61592 * 105.46945 * 16 9 8 42 42 H 1.08997 * 113.61945 * 334.55980 * 16 9 8 43 43 H 1.07999 * 125.88914 * 359.97438 * 18 17 5 44 44 H 1.08003 * 126.28713 * 180.16296 * 19 18 17 45 45 H 1.08003 * 126.29323 * 179.74146 * 20 19 18 46 46 H 1.08997 * 109.47154 * 89.97666 * 22 21 20 47 47 H 0.96702 * 114.00251 * 59.99611 * 23 22 21 48 48 H 1.48494 * 110.00021 * 58.67718 * 24 22 21 49 49 H 1.48495 * 110.00263 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6352 2.1265 -1.3074 5 6 3.5648 1.4443 0.1258 6 6 4.0577 2.8639 0.2390 7 8 3.4213 3.6781 0.8737 8 7 5.2060 3.2288 -0.3651 9 6 5.6312 4.6305 -0.3446 10 1 5.2064 5.1895 0.4892 11 6 7.1498 4.8161 -0.5006 12 6 6.8307 6.0194 -1.4033 13 1 6.7351 6.9596 -0.8600 14 8 7.6856 6.1221 -2.5438 15 6 7.8965 7.4621 -2.9934 16 6 5.4845 5.3385 -1.7018 17 7 3.9571 0.6943 1.3214 18 6 3.5976 0.9955 2.6016 19 6 4.1476 0.0767 3.4212 20 6 4.8813 -0.8191 2.6186 21 6 4.7469 -0.4170 1.3385 22 6 5.3629 -1.0816 0.1344 23 8 5.6146 -0.1012 -0.8742 24 14 6.9662 -1.8933 0.6254 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6054 1.9815 0.8418 31 1 2.0096 3.1502 -1.3128 32 1 2.0591 1.5800 -2.1497 33 1 0.5484 2.1367 -1.3907 34 1 4.0026 0.9770 -0.7563 35 1 5.7510 2.5631 -0.8133 36 1 7.6385 3.9946 -1.0246 37 1 7.6554 5.0874 0.4261 38 1 8.3544 8.0454 -2.1947 39 1 6.9404 7.9082 -3.2669 40 1 8.5552 7.4544 -3.8618 41 1 4.6445 6.0318 -1.7441 42 1 5.5179 4.6600 -2.5542 43 1 2.9772 1.8253 2.9065 44 1 4.0477 0.0374 4.4959 45 1 5.4472 -1.6713 2.9649 46 1 4.6783 -1.8353 -0.2545 47 1 6.2174 0.6024 -0.5971 48 1 6.7225 -2.8927 1.6964 49 1 7.5841 -2.5519 -0.5534 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_12360566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:06 Heat of formation + Delta-G solvation = -32.168902 kcal Electronic energy + Delta-G solvation = -29613.383948 eV Core-core repulsion = 25737.301750 eV Total energy + Delta-G solvation = -3876.082198 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.83907 -41.19229 -39.94685 -37.91220 -37.75473 -37.13124 -34.42584 -33.28921 -31.11905 -30.85853 -28.11285 -27.52306 -26.75908 -26.09052 -25.75219 -24.35810 -22.16044 -21.91952 -21.24042 -20.96200 -20.23149 -18.86757 -18.30752 -18.22770 -17.24356 -16.96349 -16.68666 -16.27304 -16.24242 -16.01202 -15.62603 -15.49469 -15.23912 -15.00962 -14.84242 -14.78436 -14.36035 -14.18570 -14.07921 -13.54774 -13.46584 -13.36978 -13.29043 -13.24127 -13.04768 -12.76289 -12.65853 -12.25204 -12.21515 -12.14271 -12.00949 -11.98754 -11.85152 -11.76014 -11.67240 -11.19501 -10.63372 -10.47300 -10.18125 -9.60432 -9.00238 -4.91959 0.91258 1.12628 1.37176 1.69694 1.83121 1.95982 2.06056 2.30250 2.91480 3.12521 3.41371 3.42923 3.51122 3.54589 3.61572 3.76975 3.80402 3.88233 3.96317 4.10838 4.21818 4.30455 4.36655 4.42400 4.48454 4.50912 4.52148 4.55562 4.58660 4.63638 4.66308 4.71685 4.73721 4.86396 4.89741 4.94649 4.95458 4.97535 4.98464 5.01975 5.07989 5.25000 5.26818 5.33078 5.35862 5.41050 5.94783 6.15128 6.25540 6.28860 6.35133 6.46816 6.99068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.086 4.086 4 C -0.145 4.145 5 C 0.111 3.889 6 C 0.515 3.485 7 O -0.560 6.560 8 N -0.696 5.696 9 C 0.121 3.879 10 H 0.105 0.895 11 C -0.133 4.133 12 C 0.060 3.940 13 H 0.101 0.899 14 O -0.394 6.394 15 C 0.023 3.977 16 C -0.166 4.166 17 N -0.417 5.417 18 C -0.011 4.011 19 C -0.203 4.203 20 C -0.203 4.203 21 C -0.012 4.012 22 C -0.046 4.046 23 O -0.546 6.546 24 Si 0.795 3.205 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.157 0.843 35 H 0.414 0.586 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.154 0.846 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.119 0.881 47 H 0.387 0.613 48 H -0.286 1.286 49 H -0.287 1.287 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.751 1.379 -2.439 4.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.105 4.105 4 C -0.203 4.203 5 C 0.005 3.995 6 C 0.299 3.701 7 O -0.436 6.436 8 N -0.348 5.348 9 C 0.016 3.984 10 H 0.123 0.877 11 C -0.171 4.171 12 C 0.002 3.998 13 H 0.118 0.882 14 O -0.313 6.313 15 C -0.073 4.073 16 C -0.205 4.205 17 N -0.094 5.094 18 C -0.141 4.141 19 C -0.227 4.227 20 C -0.228 4.228 21 C -0.123 4.123 22 C -0.156 4.156 23 O -0.353 6.353 24 Si 0.698 3.302 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.174 0.826 35 H 0.252 0.748 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.113 0.887 43 H 0.171 0.829 44 H 0.161 0.839 45 H 0.163 0.837 46 H 0.136 0.864 47 H 0.237 0.763 48 H -0.213 1.213 49 H -0.214 1.214 Dipole moment (debyes) X Y Z Total from point charges 3.327 0.896 -2.680 4.365 hybrid contribution -0.882 0.147 0.161 0.909 sum 2.444 1.043 -2.518 3.661 Atomic orbital electron populations 1.21786 0.94920 1.02054 1.02085 1.21465 0.96670 0.94584 1.02080 1.21313 0.91173 0.97885 1.00140 1.21831 1.02883 0.99781 0.95787 1.22049 0.97989 0.89252 0.90161 1.20808 0.81044 0.89979 0.78224 1.90718 1.57260 1.54206 1.41452 1.45879 1.22808 1.10315 1.55813 1.22208 0.95949 0.81878 0.98340 0.87712 1.23578 0.94429 0.98789 1.00294 1.23548 0.90046 0.98689 0.87542 0.88157 1.87906 1.68127 1.28306 1.46943 1.22948 1.01119 0.82864 1.00343 1.23992 0.98104 1.00257 0.98131 1.43731 1.38435 1.21933 1.05317 1.21916 1.05956 1.02984 0.83234 1.21053 1.04194 0.97819 0.99683 1.20842 1.07004 1.03174 0.91743 1.20987 1.01691 0.92804 0.96863 1.24960 1.09300 0.94741 0.86560 1.86396 1.69412 1.39998 1.39480 0.93098 0.78076 0.81930 0.77060 0.92292 0.93267 0.91683 0.91208 0.92782 0.91396 0.93460 0.90926 0.90898 0.82624 0.74828 0.87382 0.89087 0.92987 0.93554 0.88915 0.91201 0.88663 0.82870 0.83939 0.83707 0.86380 0.76342 1.21253 1.21390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.10 9.67 71.98 0.70 0.59 16 2 C -0.11 -0.13 5.28 30.59 0.16 0.03 16 3 C -0.09 -0.15 1.60 -10.79 -0.02 -0.17 16 4 C -0.15 -0.01 8.75 71.98 0.63 0.62 16 5 C 0.11 0.02 2.00 44.25 0.09 0.11 16 6 C 0.51 1.26 5.72 87.66 0.50 1.76 16 7 O -0.56 -5.75 15.70 -3.03 -0.05 -5.80 16 8 N -0.70 2.28 5.35 -440.03 -2.36 -0.08 16 9 C 0.12 -0.29 4.27 45.52 0.19 -0.10 16 10 H 0.10 0.14 7.42 -2.38 -0.02 0.12 16 11 C -0.13 0.70 7.66 31.12 0.24 0.94 16 12 C 0.06 -0.17 4.31 31.12 0.13 -0.03 16 13 H 0.10 -0.47 7.87 -2.39 -0.02 -0.49 16 14 O -0.39 -0.31 10.71 -148.98 -1.60 -1.91 16 15 C 0.02 -0.07 10.85 113.37 1.23 1.16 16 16 C -0.17 0.37 7.71 31.12 0.24 0.61 16 17 N -0.42 -0.78 1.58 -491.52 -0.78 -1.56 16 18 C -0.01 -0.06 10.48 83.21 0.87 0.81 16 19 C -0.20 -0.95 10.86 22.14 0.24 -0.71 16 20 C -0.20 -0.56 9.43 22.14 0.21 -0.35 16 21 C -0.01 -0.01 6.15 41.08 0.25 0.25 16 22 C -0.05 0.15 2.96 71.23 0.21 0.37 16 23 O -0.55 3.34 9.85 -148.98 -1.47 1.87 16 24 Si 0.79 -3.26 31.31 68.60 2.15 -1.11 16 25 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.06 -0.04 6.58 -2.39 -0.02 -0.06 16 28 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.05 0.24 7.23 -2.39 -0.02 0.22 16 30 H 0.07 0.43 7.61 -2.39 -0.02 0.41 16 31 H 0.05 0.13 7.26 -2.39 -0.02 0.11 16 32 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.07 -0.03 6.60 -2.38 -0.02 -0.04 16 34 H 0.16 -0.45 5.15 -2.38 -0.01 -0.46 16 35 H 0.41 -3.66 7.30 -92.70 -0.68 -4.33 16 36 H 0.11 -0.75 8.12 -2.38 -0.02 -0.77 16 37 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H 0.05 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 40 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.14 0.39 8.06 -2.91 -0.02 0.37 16 45 H 0.15 0.16 6.68 -2.91 -0.02 0.14 16 46 H 0.12 -0.33 7.96 -2.39 -0.02 -0.35 16 47 H 0.39 -4.81 7.29 -74.06 -0.54 -5.35 16 48 H -0.29 -0.46 6.78 99.48 0.67 0.21 16 49 H -0.29 -0.50 7.11 99.48 0.71 0.21 16 Total: 0.00 -15.23 386.71 1.52 -13.71 By element: Atomic # 1 Polarization: -10.74 SS G_CDS: -0.27 Total: -11.01 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 5.88 Total: 5.87 kcal Atomic # 7 Polarization: 1.50 SS G_CDS: -3.13 Total: -1.63 kcal Atomic # 8 Polarization: -2.72 SS G_CDS: -3.11 Total: -5.83 kcal Atomic # 14 Polarization: -3.26 SS G_CDS: 2.15 Total: -1.11 kcal Total: -15.23 1.52 -13.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_12360566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.457 kcal (2) G-P(sol) polarization free energy of solvation -15.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds