Wall clock time and date at job start Mon Mar 8 2021 04:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00083 * 2 1 4 4 H 1.08999 * 112.90793 * 341.25336 * 3 2 1 5 5 C 1.53781 * 113.61595 * 112.50279 * 3 2 1 6 6 C 1.54049 * 87.08031 * 139.97562 * 5 3 2 7 7 H 1.09000 * 113.61076 * 89.06984 * 6 5 3 8 8 N 1.46494 * 113.69866 * 220.05561 * 6 5 3 9 9 C 1.34779 * 119.99525 * 252.42298 * 8 6 5 10 10 O 1.21696 * 120.00593 * 359.97438 * 9 8 6 11 11 C 1.46429 * 119.99565 * 180.02562 * 9 8 6 12 12 C 1.34808 * 120.00075 * 180.02562 * 11 9 8 13 13 C 1.47203 * 120.00439 * 179.97438 * 12 11 9 14 14 C 1.39837 * 120.16662 * 359.71952 * 13 12 11 15 15 C 1.37895 * 119.82364 * 179.78666 * 14 13 12 16 16 C 1.38401 * 120.17379 * 0.47314 * 15 14 13 17 17 C 1.50698 * 119.82967 * 179.76026 * 16 15 14 18 18 O 1.42893 * 109.47325 * 245.01852 * 17 16 15 19 19 Si 1.86298 * 109.46969 * 5.02186 * 17 16 15 20 20 C 1.38404 * 120.34194 * 359.77729 * 16 15 14 21 21 C 1.37893 * 120.17268 * 359.97438 * 20 16 15 22 22 C 1.53781 * 113.61404 * 210.00015 * 3 2 1 23 23 H 1.08997 * 109.47669 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47061 * 300.00053 * 1 2 3 25 25 H 1.08998 * 109.47276 * 59.99466 * 1 2 3 26 26 H 1.09005 * 113.61471 * 254.53145 * 5 3 2 27 27 H 1.09003 * 113.61469 * 25.42923 * 5 3 2 28 28 H 0.97000 * 120.00537 * 72.42383 * 8 6 5 29 29 H 1.07998 * 120.00505 * 359.97438 * 11 9 8 30 30 H 1.08009 * 119.99864 * 359.97438 * 12 11 9 31 31 H 1.07992 * 120.08783 * 0.02898 * 14 13 12 32 32 H 1.08003 * 119.91226 * 180.22829 * 15 14 13 33 33 H 1.09005 * 109.47002 * 125.01825 * 17 16 15 34 34 H 0.96701 * 114.00426 * 179.97438 * 18 17 16 35 35 H 1.48497 * 110.00090 * 299.99691 * 19 17 16 36 36 H 1.48501 * 110.00347 * 61.31847 * 19 17 16 37 37 H 1.08001 * 119.91436 * 179.97438 * 20 16 15 38 38 H 1.08001 * 120.08485 * 179.97438 * 21 20 16 39 39 H 1.09002 * 113.61445 * 334.56823 * 22 3 2 40 40 H 1.09002 * 113.61408 * 105.38554 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3142 2.0797 -0.3227 5 6 2.7534 1.6489 1.3017 6 6 3.8246 2.3191 0.4206 7 1 3.6238 3.3701 0.2126 8 7 5.1961 2.0800 0.8766 9 6 5.8986 3.0765 1.4509 10 8 5.3939 4.1751 1.5903 11 6 7.2697 2.8377 1.9062 12 6 7.9723 3.8342 2.4812 13 6 9.3504 3.5940 2.9394 14 6 9.9322 2.3318 2.7854 15 6 11.2252 2.1158 3.2131 16 6 11.9434 3.1416 3.8025 17 6 13.3541 2.8955 4.2721 18 8 13.4120 3.0236 5.6941 19 14 13.8811 1.1774 3.7813 20 6 11.3727 4.3922 3.9632 21 6 10.0825 4.6253 3.5360 22 6 3.3755 1.3718 -0.7045 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 2.2140 2.3477 1.9412 27 1 3.1166 0.7740 1.8411 28 1 5.5986 1.2045 0.7652 29 1 7.7179 1.8629 1.7822 30 1 7.5240 4.8090 2.6056 31 1 9.3718 1.5294 2.3290 32 1 11.6773 1.1425 3.0915 33 1 14.0220 3.6252 3.8141 34 1 14.2922 2.8775 6.0667 35 1 12.9783 0.1732 4.3993 36 1 13.8558 1.0412 2.3028 37 1 11.9393 5.1876 4.4244 38 1 9.6384 5.6016 3.6625 39 1 3.9088 0.4212 -0.7138 40 1 3.3381 1.8457 -1.6854 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9984030_12360594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:10 Heat of formation + Delta-G solvation = -37.542737 kcal Electronic energy + Delta-G solvation = -21498.145687 eV Core-core repulsion = 18052.954568 eV Total energy + Delta-G solvation = -3445.191119 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22837 -40.64663 -39.72752 -37.79886 -37.25659 -35.15209 -34.10220 -32.31272 -31.35673 -28.00028 -27.27590 -26.79681 -25.29672 -24.13614 -23.37827 -21.90337 -21.26996 -20.22603 -18.69666 -18.46677 -18.19457 -17.40294 -16.89829 -16.75789 -16.38301 -16.22528 -16.01387 -15.61656 -15.26623 -15.21898 -15.05139 -14.69204 -14.31837 -14.03952 -13.82656 -13.62308 -13.54348 -13.46064 -12.99534 -12.81626 -12.35876 -12.20051 -12.17809 -12.02350 -11.94644 -11.89641 -11.34373 -10.89750 -10.51061 -10.38644 -10.07178 -10.04073 -9.29456 -5.03472 -0.58872 0.29741 0.87355 1.20797 1.57879 1.89939 2.11763 2.26142 2.72370 2.88145 3.30016 3.39115 3.49481 3.54310 3.65471 3.75157 3.77333 3.80792 3.84121 4.09863 4.11930 4.21168 4.25551 4.29345 4.41984 4.43089 4.46728 4.65349 4.66975 4.73646 4.73906 4.87387 4.88037 4.92278 4.99629 5.03940 5.08963 5.30987 5.39778 5.50997 5.54437 5.79785 6.19456 6.50850 6.54458 7.24306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.064 3.936 4 H 0.093 0.907 5 C -0.169 4.169 6 C 0.124 3.876 7 H 0.120 0.880 8 N -0.714 5.714 9 C 0.550 3.450 10 O -0.543 6.543 11 C -0.216 4.216 12 C -0.014 4.014 13 C -0.073 4.073 14 C -0.094 4.094 15 C -0.125 4.125 16 C -0.063 4.063 17 C -0.075 4.075 18 O -0.545 6.545 19 Si 0.683 3.317 20 C -0.092 4.092 21 C -0.090 4.090 22 C -0.144 4.144 23 H 0.087 0.913 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.403 0.597 29 H 0.130 0.870 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.383 0.617 35 H -0.250 1.250 36 H -0.254 1.254 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.097 0.903 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 -1.972 -0.665 4.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.005 3.995 4 H 0.111 0.889 5 C -0.208 4.208 6 C 0.019 3.981 7 H 0.138 0.862 8 N -0.364 5.364 9 C 0.339 3.661 10 O -0.422 6.422 11 C -0.236 4.236 12 C -0.033 4.033 13 C -0.073 4.073 14 C -0.112 4.112 15 C -0.143 4.143 16 C -0.063 4.063 17 C -0.185 4.185 18 O -0.351 6.351 19 Si 0.585 3.415 20 C -0.110 4.110 21 C -0.108 4.108 22 C -0.182 4.182 23 H 0.105 0.895 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.238 0.762 29 H 0.147 0.853 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.139 0.861 33 H 0.094 0.906 34 H 0.231 0.769 35 H -0.175 1.175 36 H -0.179 1.179 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.115 0.885 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.315 -1.987 -1.067 3.232 hybrid contribution -0.375 0.128 -0.128 0.417 sum 1.939 -1.859 -1.196 2.941 Atomic orbital electron populations 1.22831 0.80733 1.03067 1.00159 1.87937 1.20031 1.26876 1.94565 1.23451 0.93744 0.85784 0.96508 0.88914 1.24069 0.97471 1.01426 0.97791 1.22246 0.80538 1.00493 0.94862 0.86249 1.45775 1.14679 1.14270 1.61684 1.18354 0.86185 0.84178 0.77337 1.90828 1.71509 1.23874 1.55990 1.22895 0.94587 1.00895 1.05250 1.22405 0.91067 0.99404 0.90439 1.19053 0.93756 0.94026 1.00510 1.21308 0.94574 0.96531 0.98767 1.20838 0.94970 0.97978 1.00500 1.19530 0.94501 0.94142 0.98115 1.24726 0.96038 1.12187 0.85594 1.86494 1.35805 1.94782 1.18038 0.95248 0.89167 0.76096 0.81025 1.20989 0.95026 0.96629 0.98320 1.21476 0.94087 0.98830 0.96436 1.23625 0.95706 1.00405 0.98492 0.89456 0.93843 0.93790 0.90558 0.88738 0.76164 0.85252 0.84296 0.85068 0.86103 0.90580 0.76890 1.17490 1.17912 0.84965 0.84775 0.88494 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.85 101.05 1.10 1.08 16 2 O -0.38 -0.66 10.71 -35.23 -0.38 -1.03 16 3 C 0.06 0.00 4.31 -25.92 -0.11 -0.11 16 4 H 0.09 -0.11 7.87 -51.93 -0.41 -0.52 16 5 C -0.17 -0.06 7.72 -25.78 -0.20 -0.26 16 6 C 0.12 0.04 4.25 -66.98 -0.28 -0.24 16 7 H 0.12 0.18 7.46 -51.93 -0.39 -0.20 16 8 N -0.71 -0.15 5.36 -54.27 -0.29 -0.44 16 9 C 0.55 1.49 7.74 -12.96 -0.10 1.39 16 10 O -0.54 -3.54 15.83 5.19 0.08 -3.46 16 11 C -0.22 -0.16 9.41 -37.50 -0.35 -0.51 16 12 C -0.01 -0.02 9.46 -37.16 -0.35 -0.37 16 13 C -0.07 -0.11 5.87 -105.06 -0.62 -0.73 16 14 C -0.09 -0.11 9.41 -39.11 -0.37 -0.48 16 15 C -0.13 -0.24 8.65 -39.65 -0.34 -0.59 16 16 C -0.06 -0.12 5.39 -104.50 -0.56 -0.69 16 17 C -0.07 0.03 2.79 36.00 0.10 0.13 16 18 O -0.54 0.02 12.81 -35.23 -0.45 -0.43 16 19 Si 0.68 -0.93 29.83 -169.99 -5.07 -6.00 16 20 C -0.09 -0.14 9.66 -39.65 -0.38 -0.52 16 21 C -0.09 -0.10 9.80 -39.11 -0.38 -0.49 16 22 C -0.14 0.11 7.65 -25.92 -0.20 -0.08 16 23 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 24 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 25 H 0.04 -0.06 8.14 -51.93 -0.42 -0.49 16 26 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 27 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.40 -0.95 8.71 -40.82 -0.36 -1.30 16 29 H 0.13 -0.23 6.07 -52.49 -0.32 -0.55 16 30 H 0.14 0.23 7.52 -52.48 -0.39 -0.16 16 31 H 0.13 -0.14 6.17 -52.49 -0.32 -0.46 16 32 H 0.12 0.15 4.84 -52.48 -0.25 -0.10 16 33 H 0.08 -0.16 7.96 -51.93 -0.41 -0.57 16 34 H 0.38 -1.95 8.74 45.56 0.40 -1.55 16 35 H -0.25 -0.44 7.04 56.52 0.40 -0.04 16 36 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 37 H 0.13 0.02 8.06 -52.49 -0.42 -0.40 16 38 H 0.13 -0.10 8.06 -52.49 -0.42 -0.52 16 39 H 0.10 -0.10 8.12 -51.93 -0.42 -0.52 16 40 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 LS Contribution 340.09 15.07 5.13 5.13 Total: 0.00 -8.74 340.09 -9.51 -18.24 By element: Atomic # 1 Polarization: -4.07 SS G_CDS: -5.46 Total: -9.53 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -3.06 Total: -2.47 kcal Atomic # 7 Polarization: -0.15 SS G_CDS: -0.29 Total: -0.44 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.75 Total: -4.93 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: -5.07 Total: -6.00 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -8.74 -9.51 -18.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_12360594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.301 kcal (2) G-P(sol) polarization free energy of solvation -8.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds