Wall clock time and date at job start Mon Mar 8 2021 04:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00083 * 2 1 4 4 H 1.08999 * 112.90793 * 341.25336 * 3 2 1 5 5 C 1.53781 * 113.61595 * 112.50279 * 3 2 1 6 6 C 1.54049 * 87.08031 * 139.97562 * 5 3 2 7 7 H 1.09000 * 113.61076 * 89.06984 * 6 5 3 8 8 N 1.46494 * 113.69866 * 220.05561 * 6 5 3 9 9 C 1.34779 * 119.99525 * 252.42298 * 8 6 5 10 10 O 1.21696 * 120.00593 * 359.97438 * 9 8 6 11 11 C 1.46429 * 119.99565 * 180.02562 * 9 8 6 12 12 C 1.34808 * 120.00075 * 180.02562 * 11 9 8 13 13 C 1.47203 * 120.00439 * 179.97438 * 12 11 9 14 14 C 1.39837 * 120.16662 * 359.71952 * 13 12 11 15 15 C 1.37895 * 119.82364 * 179.78666 * 14 13 12 16 16 C 1.38401 * 120.17379 * 0.47314 * 15 14 13 17 17 C 1.50698 * 119.82967 * 179.76026 * 16 15 14 18 18 O 1.42893 * 109.47325 * 245.01852 * 17 16 15 19 19 Si 1.86298 * 109.46969 * 5.02186 * 17 16 15 20 20 C 1.38404 * 120.34194 * 359.77729 * 16 15 14 21 21 C 1.37893 * 120.17268 * 359.97438 * 20 16 15 22 22 C 1.53781 * 113.61404 * 210.00015 * 3 2 1 23 23 H 1.08997 * 109.47669 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47061 * 300.00053 * 1 2 3 25 25 H 1.08998 * 109.47276 * 59.99466 * 1 2 3 26 26 H 1.09005 * 113.61471 * 254.53145 * 5 3 2 27 27 H 1.09003 * 113.61469 * 25.42923 * 5 3 2 28 28 H 0.97000 * 120.00537 * 72.42383 * 8 6 5 29 29 H 1.07998 * 120.00505 * 359.97438 * 11 9 8 30 30 H 1.08009 * 119.99864 * 359.97438 * 12 11 9 31 31 H 1.07992 * 120.08783 * 0.02898 * 14 13 12 32 32 H 1.08003 * 119.91226 * 180.22829 * 15 14 13 33 33 H 1.09005 * 109.47002 * 125.01825 * 17 16 15 34 34 H 0.96701 * 114.00426 * 179.97438 * 18 17 16 35 35 H 1.48497 * 110.00090 * 299.99691 * 19 17 16 36 36 H 1.48501 * 110.00347 * 61.31847 * 19 17 16 37 37 H 1.08001 * 119.91436 * 179.97438 * 20 16 15 38 38 H 1.08001 * 120.08485 * 179.97438 * 21 20 16 39 39 H 1.09002 * 113.61445 * 334.56823 * 22 3 2 40 40 H 1.09002 * 113.61408 * 105.38554 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3142 2.0797 -0.3227 5 6 2.7534 1.6489 1.3017 6 6 3.8246 2.3191 0.4206 7 1 3.6238 3.3701 0.2126 8 7 5.1961 2.0800 0.8766 9 6 5.8986 3.0765 1.4509 10 8 5.3939 4.1751 1.5903 11 6 7.2697 2.8377 1.9062 12 6 7.9723 3.8342 2.4812 13 6 9.3504 3.5940 2.9394 14 6 9.9322 2.3318 2.7854 15 6 11.2252 2.1158 3.2131 16 6 11.9434 3.1416 3.8025 17 6 13.3541 2.8955 4.2721 18 8 13.4120 3.0236 5.6941 19 14 13.8811 1.1774 3.7813 20 6 11.3727 4.3922 3.9632 21 6 10.0825 4.6253 3.5360 22 6 3.3755 1.3718 -0.7045 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 2.2140 2.3477 1.9412 27 1 3.1166 0.7740 1.8411 28 1 5.5986 1.2045 0.7652 29 1 7.7179 1.8629 1.7822 30 1 7.5240 4.8090 2.6056 31 1 9.3718 1.5294 2.3290 32 1 11.6773 1.1425 3.0915 33 1 14.0220 3.6252 3.8141 34 1 14.2922 2.8775 6.0667 35 1 12.9783 0.1732 4.3993 36 1 13.8558 1.0412 2.3028 37 1 11.9393 5.1876 4.4244 38 1 9.6384 5.6016 3.6625 39 1 3.9088 0.4212 -0.7138 40 1 3.3381 1.8457 -1.6854 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_12360594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:10 Heat of formation + Delta-G solvation = -37.580832 kcal Electronic energy + Delta-G solvation = -21498.147339 eV Core-core repulsion = 18052.954568 eV Total energy + Delta-G solvation = -3445.192771 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.33992 -40.68462 -39.84722 -37.75358 -37.31523 -35.23780 -34.23166 -32.36611 -31.40530 -27.98358 -27.29215 -26.79360 -25.32942 -24.18824 -23.42740 -21.99802 -21.32372 -20.29555 -18.78449 -18.39745 -18.22841 -17.45525 -16.95607 -16.78377 -16.43530 -16.27886 -16.05992 -15.76139 -15.29586 -15.23902 -15.11485 -14.72239 -14.36756 -14.09581 -13.86999 -13.64007 -13.54660 -13.48509 -13.06633 -12.80084 -12.40932 -12.22782 -12.18330 -12.05774 -11.96912 -11.90007 -11.43548 -11.12790 -10.52181 -10.31600 -10.16896 -10.13550 -9.35850 -4.94641 -0.67379 0.22382 0.76613 1.28932 1.63679 1.95143 2.05079 2.11531 2.66073 2.89973 3.35384 3.38998 3.47291 3.49706 3.62936 3.72882 3.75829 3.82731 3.89095 4.06249 4.09651 4.19744 4.26478 4.30924 4.47437 4.48910 4.51655 4.66991 4.67598 4.69793 4.81970 4.83626 4.89424 4.91318 4.94625 4.99010 5.04260 5.24762 5.33627 5.44140 5.46904 5.75130 6.21519 6.45287 6.88435 7.11436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.062 3.938 4 H 0.104 0.896 5 C -0.167 4.167 6 C 0.120 3.880 7 H 0.106 0.894 8 N -0.701 5.701 9 C 0.545 3.455 10 O -0.589 6.589 11 C -0.211 4.211 12 C -0.017 4.017 13 C -0.082 4.082 14 C -0.098 4.098 15 C -0.145 4.145 16 C -0.081 4.081 17 C -0.083 4.083 18 O -0.564 6.564 19 Si 0.773 3.227 20 C -0.102 4.102 21 C -0.097 4.097 22 C -0.133 4.133 23 H 0.093 0.907 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.418 0.582 29 H 0.157 0.843 30 H 0.130 0.870 31 H 0.152 0.848 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.404 0.596 35 H -0.295 1.295 36 H -0.288 1.288 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.102 0.898 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.017 -2.488 -0.926 4.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.003 3.997 4 H 0.122 0.878 5 C -0.206 4.206 6 C 0.015 3.985 7 H 0.124 0.876 8 N -0.351 5.351 9 C 0.335 3.665 10 O -0.471 6.471 11 C -0.231 4.231 12 C -0.037 4.037 13 C -0.082 4.082 14 C -0.115 4.115 15 C -0.162 4.162 16 C -0.081 4.081 17 C -0.193 4.193 18 O -0.374 6.374 19 Si 0.679 3.321 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.171 4.171 23 H 0.112 0.888 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.255 0.745 29 H 0.175 0.825 30 H 0.148 0.852 31 H 0.169 0.831 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.255 0.745 35 H -0.223 1.223 36 H -0.215 1.215 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.121 0.879 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.913 -2.523 -1.323 4.074 hybrid contribution -0.602 0.257 -0.038 0.656 sum 2.311 -2.266 -1.361 3.511 Atomic orbital electron populations 1.22964 0.79788 1.03749 1.00806 1.87901 1.21229 1.27732 1.94666 1.23549 0.94273 0.85626 0.96227 0.87835 1.24038 0.97546 1.01068 0.97987 1.22217 0.80537 1.00096 0.95647 0.87626 1.45715 1.14504 1.14469 1.60426 1.18697 0.86887 0.83851 0.77033 1.90805 1.72570 1.25703 1.58029 1.23005 0.93509 1.01965 1.04657 1.22370 0.91179 0.99340 0.90811 1.19122 0.93758 0.94375 1.00919 1.21567 0.94536 0.97017 0.98408 1.21015 0.95614 0.98231 1.01343 1.19933 0.95811 0.94311 0.98049 1.24878 0.95130 1.13490 0.85764 1.86441 1.37953 1.94913 1.18095 0.94311 0.87145 0.73210 0.77432 1.21189 0.95308 0.96937 0.98585 1.21738 0.94179 0.99517 0.96025 1.23563 0.95023 1.00209 0.98342 0.88840 0.93490 0.92857 0.91190 0.89057 0.74494 0.82515 0.85174 0.83057 0.86071 0.88626 0.74465 1.22330 1.21489 0.83921 0.83413 0.87947 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.40 -1.28 10.71 -148.98 -1.60 -2.88 16 3 C 0.06 -0.01 4.31 31.12 0.13 0.13 16 4 H 0.10 -0.27 7.87 -2.39 -0.02 -0.29 16 5 C -0.17 -0.20 7.72 31.21 0.24 0.05 16 6 C 0.12 0.13 4.25 45.61 0.19 0.32 16 7 H 0.11 0.45 7.46 -2.39 -0.02 0.43 16 8 N -0.70 -0.29 5.36 -443.82 -2.38 -2.67 16 9 C 0.54 3.28 7.74 86.38 0.67 3.95 16 10 O -0.59 -8.61 15.83 -4.34 -0.07 -8.68 16 11 C -0.21 -0.31 9.41 23.62 0.22 -0.09 16 12 C -0.02 -0.06 9.46 23.84 0.23 0.17 16 13 C -0.08 -0.27 5.87 -20.15 -0.12 -0.39 16 14 C -0.10 -0.24 9.41 22.58 0.21 -0.03 16 15 C -0.14 -0.63 8.65 22.23 0.19 -0.44 16 16 C -0.08 -0.33 5.39 -19.79 -0.11 -0.44 16 17 C -0.08 0.10 2.79 71.24 0.20 0.29 16 18 O -0.56 0.39 12.81 -148.98 -1.91 -1.52 16 19 Si 0.77 -2.08 29.83 68.60 2.05 -0.03 16 20 C -0.10 -0.33 9.66 22.23 0.21 -0.11 16 21 C -0.10 -0.27 9.80 22.58 0.22 -0.05 16 22 C -0.13 0.28 7.65 31.12 0.24 0.51 16 23 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 24 H 0.05 -0.11 8.14 -2.38 -0.02 -0.13 16 25 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.07 0.16 8.14 -2.38 -0.02 0.14 16 27 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.42 -2.28 8.71 -92.71 -0.81 -3.09 16 29 H 0.16 -0.76 6.07 -2.91 -0.02 -0.78 16 30 H 0.13 0.63 7.52 -2.91 -0.02 0.61 16 31 H 0.15 -0.44 6.17 -2.91 -0.02 -0.46 16 32 H 0.12 0.41 4.84 -2.91 -0.01 0.39 16 33 H 0.10 -0.50 7.96 -2.38 -0.02 -0.52 16 34 H 0.40 -4.54 8.74 -74.06 -0.65 -5.19 16 35 H -0.30 -1.37 7.04 99.48 0.70 -0.67 16 36 H -0.29 -0.76 7.11 99.48 0.71 -0.05 16 37 H 0.14 0.03 8.06 -2.91 -0.02 0.01 16 38 H 0.15 -0.16 8.06 -2.91 -0.02 -0.18 16 39 H 0.10 -0.30 8.12 -2.39 -0.02 -0.32 16 40 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 Total: 0.00 -21.20 340.09 -0.29 -21.50 By element: Atomic # 1 Polarization: -10.43 SS G_CDS: -0.36 Total: -10.79 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 3.97 Total: 5.08 kcal Atomic # 7 Polarization: -0.29 SS G_CDS: -2.38 Total: -2.67 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -3.57 Total: -13.08 kcal Atomic # 14 Polarization: -2.08 SS G_CDS: 2.05 Total: -0.03 kcal Total: -21.20 -0.29 -21.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_12360594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.085 kcal (2) G-P(sol) polarization free energy of solvation -21.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds