Wall clock time and date at job start Mon Mar 8 2021 04:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35653 * 117.00271 * 2 1 4 4 C 1.40141 * 120.15112 * 179.97438 * 3 2 1 5 5 C 1.47541 * 120.18797 * 359.95778 * 4 3 2 6 6 O 1.21586 * 120.00250 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99261 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99461 * 179.97438 * 7 5 4 9 9 H 1.09003 * 112.84947 * 23.80533 * 8 7 5 10 10 C 1.53783 * 113.61134 * 154.99821 * 8 7 5 11 11 C 1.53785 * 87.07951 * 139.98471 * 10 8 7 12 12 H 1.08997 * 113.61669 * 89.19991 * 11 10 8 13 13 O 1.42899 * 113.61192 * 220.01939 * 11 10 8 14 14 C 1.42905 * 113.99778 * 208.46731 * 13 11 10 15 15 C 1.53785 * 87.17149 * 334.60896 * 11 10 8 16 16 C 1.39704 * 119.61712 * 180.22815 * 4 3 2 17 17 C 1.37794 * 119.90483 * 359.51864 * 16 4 3 18 18 C 1.50702 * 119.84748 * 180.22897 * 17 16 4 19 19 O 1.42902 * 109.47283 * 300.23783 * 18 17 16 20 20 Si 1.86292 * 109.47205 * 180.23188 * 18 17 16 21 21 C 1.38543 * 120.30076 * 0.46487 * 17 16 4 22 22 C 1.38054 * 120.38964 * 359.78813 * 21 17 16 23 23 H 1.09003 * 109.47612 * 300.00551 * 1 2 3 24 24 H 1.09000 * 109.46779 * 59.99996 * 1 2 3 25 25 H 1.09000 * 109.47649 * 180.02562 * 1 2 3 26 26 H 0.96997 * 120.00702 * 0.02562 * 7 5 4 27 27 H 1.09000 * 113.61637 * 25.43393 * 10 8 7 28 28 H 1.09007 * 113.61496 * 254.52811 * 10 8 7 29 29 H 1.09001 * 109.46558 * 60.00281 * 14 13 11 30 30 H 1.09001 * 109.47103 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.47187 * 300.00233 * 14 13 11 32 32 H 1.09000 * 113.61294 * 139.93697 * 15 11 10 33 33 H 1.08997 * 113.61578 * 270.84385 * 15 11 10 34 34 H 1.08000 * 120.04636 * 179.72422 * 16 4 3 35 35 H 1.09002 * 109.47202 * 60.23343 * 18 17 16 36 36 H 0.96698 * 113.99454 * 299.99566 * 19 18 17 37 37 H 1.48499 * 110.00214 * 179.97438 * 20 18 17 38 38 H 1.48506 * 110.00258 * 301.32243 * 20 18 17 39 39 H 1.08006 * 119.80430 * 179.76519 * 21 17 16 40 40 H 1.08002 * 119.95710 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 3.4442 1.2856 0.0005 5 6 4.2550 0.0530 0.0021 6 8 3.7094 -1.0336 0.0033 7 7 5.6005 0.1316 0.0020 8 6 6.4056 -1.0923 0.0041 9 1 5.8705 -1.9517 -0.4000 10 6 7.8111 -0.9061 -0.5916 11 6 8.3237 -1.8195 0.5344 12 1 8.3149 -2.8783 0.2759 13 8 9.5683 -1.3952 1.0937 14 6 10.3606 -2.4601 1.6233 15 6 7.0982 -1.3742 1.3499 16 6 4.0668 2.5362 0.0054 17 6 3.3038 3.6836 -0.0005 18 6 3.9769 5.0319 -0.0005 19 8 4.7916 5.1577 1.1668 20 14 2.6828 6.3720 -0.0020 21 6 1.9207 3.6033 -0.0014 22 6 1.2926 2.3739 -0.0009 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 6.0357 0.9984 0.0014 27 1 8.1809 0.1172 -0.5263 28 1 7.9237 -1.3352 -1.5873 29 1 10.5903 -3.1713 0.8299 30 1 11.2884 -2.0559 2.0283 31 1 9.8077 -2.9652 2.4153 32 1 6.6362 -2.1807 1.9192 33 1 7.2728 -0.4792 1.9469 34 1 5.1447 2.6036 0.0103 35 1 4.5996 5.1272 -0.8901 36 1 4.3025 5.0830 1.9976 37 1 3.3337 7.7067 -0.0013 38 1 1.8090 6.2330 -1.1947 39 1 1.3304 4.5077 -0.0022 40 1 0.2139 2.3194 -0.0021 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_12496546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:16 Heat of formation + Delta-G solvation = -84.794697 kcal Electronic energy + Delta-G solvation = -23708.652134 eV Core-core repulsion = 20070.955965 eV Total energy + Delta-G solvation = -3637.696170 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.85001 -40.84324 -39.54145 -39.18775 -37.26081 -37.09686 -34.40817 -32.42667 -31.78935 -28.56235 -27.81902 -26.79918 -26.15252 -25.93737 -24.27138 -22.51210 -21.58491 -21.00254 -19.44479 -18.38006 -18.31720 -17.95838 -17.12860 -16.87964 -16.72281 -16.40075 -16.20115 -16.03629 -15.86147 -15.71281 -15.56052 -15.03931 -14.60768 -14.53813 -14.39784 -13.69072 -13.56381 -13.50438 -13.31978 -13.13475 -12.75964 -12.43472 -12.20987 -12.14902 -12.09404 -12.05079 -11.86972 -11.77395 -11.01444 -10.50461 -10.39361 -10.29113 -10.03244 -9.29162 -4.97369 -0.28226 0.20691 1.34079 1.64992 1.74276 1.99680 2.03270 2.26111 2.66075 2.91539 3.39648 3.48461 3.51902 3.57717 3.67230 3.75500 3.79207 3.85246 3.98596 4.14806 4.28563 4.31003 4.36112 4.39999 4.50060 4.53856 4.55967 4.67257 4.69119 4.69729 4.73294 4.83960 4.89758 4.92123 4.94336 5.01674 5.10769 5.26818 5.46247 5.55639 6.23561 6.29337 6.48528 6.80576 7.16940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.172 3.828 4 C -0.198 4.198 5 C 0.558 3.442 6 O -0.564 6.564 7 N -0.706 5.706 8 C 0.123 3.877 9 H 0.105 0.895 10 C -0.133 4.133 11 C 0.063 3.937 12 H 0.104 0.896 13 O -0.396 6.396 14 C 0.023 3.977 15 C -0.167 4.167 16 C -0.017 4.017 17 C -0.167 4.167 18 C -0.066 4.066 19 O -0.555 6.555 20 Si 0.773 3.227 21 C -0.042 4.042 22 C -0.211 4.211 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.107 0.893 26 H 0.411 0.589 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.148 0.852 35 H 0.112 0.888 36 H 0.395 0.605 37 H -0.302 1.302 38 H -0.282 1.282 39 H 0.158 0.842 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 2.554 1.536 3.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.123 3.877 4 C -0.202 4.202 5 C 0.347 3.653 6 O -0.443 6.443 7 N -0.358 5.358 8 C 0.017 3.983 9 H 0.123 0.877 10 C -0.172 4.172 11 C 0.005 3.995 12 H 0.122 0.878 13 O -0.315 6.315 14 C -0.073 4.073 15 C -0.206 4.206 16 C -0.036 4.036 17 C -0.168 4.168 18 C -0.176 4.176 19 O -0.363 6.363 20 Si 0.679 3.321 21 C -0.060 4.060 22 C -0.230 4.230 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.126 0.874 26 H 0.249 0.751 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.165 0.835 35 H 0.129 0.871 36 H 0.245 0.755 37 H -0.230 1.230 38 H -0.209 1.209 39 H 0.175 0.825 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.117 2.496 0.681 3.343 hybrid contribution 0.352 -0.376 -0.321 0.606 sum -1.766 2.120 0.360 2.782 Atomic orbital electron populations 1.23455 0.76474 1.05496 1.02901 1.86334 1.23252 1.26387 1.86546 1.19405 0.91266 0.85605 0.91409 1.19409 0.91222 0.93919 1.15625 1.18348 0.82627 0.88720 0.75635 1.90799 1.72446 1.30271 1.50798 1.45746 1.05140 1.10055 1.74873 1.22198 0.90232 0.88490 0.97335 0.87693 1.23561 0.92598 1.02076 0.98922 1.23536 0.82764 0.98944 0.94248 0.87816 1.87906 1.31174 1.34394 1.78017 1.22963 0.95563 0.90564 0.98204 1.24018 0.96346 1.02653 0.97554 1.21089 1.00666 0.89270 0.92574 1.20258 0.93875 0.95959 1.06715 1.25082 1.02099 0.99081 0.91336 1.86475 1.38153 1.95321 1.16303 0.93805 0.77906 0.73912 0.86479 1.21287 0.93646 0.97941 0.93096 1.21481 1.01817 0.90849 1.08829 0.90604 0.90964 0.87449 0.75063 0.88073 0.89000 0.92900 0.88840 0.93454 0.91105 0.89077 0.83455 0.87091 0.75453 1.23013 1.20880 0.82470 0.81873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.74 8.57 -68.76 -0.59 -3.33 16 3 C 0.17 0.97 6.70 22.84 0.15 1.12 16 4 C -0.20 -1.16 5.89 -20.01 -0.12 -1.28 16 5 C 0.56 5.45 7.76 86.70 0.67 6.13 16 6 O -0.56 -10.15 14.76 16.93 0.25 -9.90 16 7 N -0.71 -2.31 5.31 -442.91 -2.35 -4.66 16 8 C 0.12 0.35 4.24 45.58 0.19 0.54 16 9 H 0.11 0.63 7.46 -2.39 -0.02 0.62 16 10 C -0.13 0.09 7.67 31.12 0.24 0.33 16 11 C 0.06 0.05 4.30 31.12 0.13 0.18 16 12 H 0.10 -0.19 7.88 -2.39 -0.02 -0.21 16 13 O -0.40 -1.55 10.71 -148.98 -1.60 -3.15 16 14 C 0.02 -0.02 10.85 113.37 1.23 1.21 16 15 C -0.17 -0.39 7.73 31.18 0.24 -0.14 16 16 C -0.02 0.00 9.08 22.52 0.20 0.20 16 17 C -0.17 0.39 5.39 -19.90 -0.11 0.28 16 18 C -0.07 0.24 2.81 71.24 0.20 0.44 16 19 O -0.55 1.62 12.76 -148.98 -1.90 -0.28 16 20 Si 0.77 -3.85 29.77 68.60 2.04 -1.80 16 21 C -0.04 0.16 8.66 22.30 0.19 0.35 16 22 C -0.21 0.28 9.03 22.34 0.20 0.48 16 23 H 0.08 -0.39 7.66 -2.39 -0.02 -0.41 16 24 H 0.07 -0.34 7.66 -2.39 -0.02 -0.35 16 25 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H 0.41 -0.76 6.76 -92.71 -0.63 -1.39 16 27 H 0.10 -0.14 8.12 -2.39 -0.02 -0.16 16 28 H 0.09 -0.21 8.14 -2.38 -0.02 -0.23 16 29 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.09 0.27 8.14 -2.39 -0.02 0.26 16 34 H 0.15 -0.49 6.40 -2.91 -0.02 -0.50 16 35 H 0.11 -0.32 7.96 -2.39 -0.02 -0.34 16 36 H 0.40 -4.13 8.70 -74.06 -0.64 -4.78 16 37 H -0.30 -1.00 7.11 99.48 0.71 -0.30 16 38 H -0.28 0.21 7.11 99.48 0.71 0.92 16 39 H 0.16 -1.44 4.85 -2.91 -0.01 -1.45 16 40 H 0.16 -1.09 6.30 -2.91 -0.02 -1.10 16 Total: 0.00 -22.51 332.76 0.25 -22.26 By element: Atomic # 1 Polarization: -9.91 SS G_CDS: -0.16 Total: -10.06 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 4.55 Total: 10.94 kcal Atomic # 7 Polarization: -2.31 SS G_CDS: -2.35 Total: -4.66 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -3.84 Total: -16.67 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: 2.04 Total: -1.80 kcal Total: -22.51 0.25 -22.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_12496546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.536 kcal (2) G-P(sol) polarization free energy of solvation -22.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds