Wall clock time and date at job start Mon Mar 8 2021 04:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35889 * 116.99480 * 2 1 4 4 C 1.38818 * 119.93231 * 179.97438 * 3 2 1 5 5 C 1.37923 * 120.06167 * 180.23398 * 4 3 2 6 6 C 1.39356 * 119.93632 * 359.50337 * 5 4 3 7 7 C 1.48413 * 120.06640 * 180.25297 * 6 5 4 8 8 N 1.31617 * 126.03688 * 223.34726 * 7 6 5 9 9 N 1.40078 * 108.10560 * 179.90521 * 8 7 6 10 10 C 1.46498 * 125.92834 * 180.11972 * 9 8 7 11 11 C 1.50697 * 109.47581 * 305.28252 * 10 9 8 12 12 O 1.21276 * 119.99796 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00175 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99929 * 179.97438 * 13 11 10 15 15 H 1.08996 * 112.85168 * 336.20005 * 14 13 11 16 16 C 1.53779 * 113.61343 * 107.50942 * 14 13 11 17 17 C 1.53780 * 87.08491 * 139.98161 * 16 14 13 18 18 H 1.08998 * 113.61779 * 89.11350 * 17 16 14 19 19 O 1.42897 * 113.61483 * 220.01811 * 17 16 14 20 20 C 1.42898 * 114.00291 * 247.49356 * 19 17 16 21 21 C 1.53786 * 113.61260 * 205.00344 * 14 13 11 22 22 C 1.35034 * 108.13984 * 0.36162 * 9 8 7 23 23 C 1.35086 * 107.98064 * 359.78368 * 22 9 8 24 24 C 1.50703 * 126.07575 * 180.02562 * 23 22 9 25 25 O 1.42898 * 109.46915 * 104.01461 * 24 23 22 26 26 Si 1.86301 * 109.46986 * 344.01641 * 24 23 22 27 27 C 1.39352 * 119.87303 * 0.50078 * 6 5 4 28 28 C 1.37929 * 119.93101 * 359.75076 * 27 6 5 29 29 H 1.08994 * 109.47306 * 59.99661 * 1 2 3 30 30 H 1.09001 * 109.46925 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47178 * 299.98883 * 1 2 3 32 32 H 1.07995 * 119.97026 * 359.96756 * 4 3 2 33 33 H 1.08000 * 120.03414 * 179.73146 * 5 4 3 34 34 H 1.09004 * 109.46758 * 65.28157 * 10 9 8 35 35 H 1.09000 * 109.47054 * 185.27292 * 10 9 8 36 36 H 0.96996 * 119.99354 * 0.02562 * 13 11 10 37 37 H 1.09004 * 113.61189 * 254.52443 * 16 14 13 38 38 H 1.08997 * 113.61610 * 25.42832 * 16 14 13 39 39 H 1.08999 * 109.46903 * 60.00073 * 20 19 17 40 40 H 1.08998 * 109.47412 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.46899 * 300.00058 * 20 19 17 42 42 H 1.09005 * 113.61463 * 334.56874 * 21 14 13 43 43 H 1.09001 * 113.61217 * 105.38697 * 21 14 13 44 44 H 1.07996 * 126.01112 * 179.76292 * 22 9 8 45 45 H 1.09000 * 109.46914 * 224.01554 * 24 23 22 46 46 H 0.96699 * 114.00365 * 300.00095 * 25 24 23 47 47 H 1.48496 * 109.99829 * 58.67953 * 26 24 23 48 48 H 1.48505 * 109.99743 * 180.02562 * 26 24 23 49 49 H 1.07997 * 120.03866 * 179.73008 * 27 6 5 50 50 H 1.08004 * 119.96305 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2108 0.0000 4 6 3.4322 1.2820 0.0005 5 6 4.0610 2.5095 0.0054 6 6 3.3033 3.6791 -0.0007 7 6 3.9770 5.0015 -0.0011 8 7 3.6357 6.0446 0.7254 9 7 4.5227 7.0883 0.4321 10 6 4.4994 8.4281 1.0241 11 6 3.1347 9.0381 0.8332 12 8 2.2671 8.4152 0.2587 13 7 2.8783 10.2759 1.3009 14 6 1.5518 10.8690 1.1147 15 1 1.0103 10.4390 0.2722 16 6 0.7235 10.9438 2.4082 17 6 0.2539 12.3294 1.9344 18 1 -0.6436 12.2986 1.3167 19 8 0.1743 13.2965 2.9834 20 6 -1.1575 13.7157 3.2876 21 6 1.5579 12.4068 1.1229 22 6 5.3997 6.6468 -0.4949 23 6 5.0907 5.3638 -0.7836 24 6 5.8101 4.4775 -1.7675 25 8 6.6313 3.5474 -1.0587 26 14 6.8759 5.5235 -2.8815 27 6 1.9118 3.6046 -0.0011 28 6 1.2884 2.3741 -0.0007 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5136 0.8901 32 1 4.0189 0.3753 0.0015 33 1 5.1396 2.5643 0.0102 34 1 4.7205 8.3586 2.0893 35 1 5.2482 9.0533 0.5378 36 1 3.5723 10.7742 1.7600 37 1 -0.0766 10.2051 2.4577 38 1 1.3295 10.9742 3.3137 39 1 -1.7475 12.8538 3.5993 40 1 -1.1324 14.4490 4.0936 41 1 -1.6085 14.1638 2.4022 42 1 2.3922 12.8372 1.6769 43 1 1.4331 12.8491 0.1345 44 1 6.2061 7.2188 -0.9294 45 1 5.0805 3.9342 -2.3679 46 1 7.3050 3.9617 -0.5023 47 1 7.8539 6.2938 -2.0719 48 1 7.5903 4.6612 -3.8569 49 1 1.3219 4.5092 -0.0014 50 1 0.2100 2.3158 -0.0006 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_12622750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:25 Heat of formation + Delta-G solvation = -2.616005 kcal Electronic energy + Delta-G solvation = -33473.112482 eV Core-core repulsion = 28856.836747 eV Total energy + Delta-G solvation = -4616.275735 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.47387 -41.23908 -40.96984 -39.80408 -38.46119 -37.76396 -37.28311 -34.70375 -34.09723 -32.32238 -31.82615 -31.22343 -29.00692 -28.08766 -27.71270 -26.78015 -25.99188 -24.91124 -23.92031 -23.34822 -21.89216 -21.54977 -21.17464 -20.80933 -19.18030 -18.74634 -18.35874 -18.12604 -17.33905 -17.08070 -16.94854 -16.70326 -16.60724 -16.55530 -16.24420 -16.01449 -15.78818 -15.68004 -15.35108 -15.26300 -14.89192 -14.72764 -14.59244 -14.47585 -14.30520 -13.84041 -13.65396 -13.60378 -13.49388 -13.21375 -13.03490 -12.78343 -12.76867 -12.48553 -12.23102 -12.20947 -12.15509 -12.01626 -11.88451 -11.75779 -11.56799 -11.15438 -10.51134 -10.45735 -10.35266 -10.11736 -10.04470 -9.62526 -8.98604 -4.80093 0.08808 0.33033 0.84208 1.30969 1.45233 1.47330 1.64804 1.67800 2.05997 2.07455 2.31626 2.75699 2.89901 3.36737 3.42470 3.51625 3.55957 3.63843 3.71573 3.78371 3.79569 3.86132 3.93152 3.97237 4.14587 4.22032 4.23424 4.28511 4.34577 4.36246 4.44035 4.48378 4.49353 4.51971 4.67101 4.69685 4.70839 4.73959 4.78194 4.83208 4.92211 4.92752 4.94191 5.01120 5.03453 5.09407 5.25012 5.44776 5.51589 5.57753 5.72867 5.94274 6.22519 6.36187 6.46649 6.63240 6.68204 7.15705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.125 3.875 4 C -0.164 4.164 5 C -0.053 4.053 6 C -0.068 4.068 7 C 0.118 3.882 8 N -0.295 5.295 9 N -0.360 5.360 10 C 0.110 3.890 11 C 0.498 3.502 12 O -0.562 6.562 13 N -0.701 5.701 14 C 0.127 3.873 15 H 0.100 0.900 16 C -0.169 4.169 17 C 0.059 3.941 18 H 0.099 0.901 19 O -0.395 6.395 20 C 0.023 3.977 21 C -0.129 4.129 22 C 0.075 3.925 23 C -0.261 4.261 24 C -0.046 4.046 25 O -0.545 6.545 26 Si 0.769 3.231 27 C -0.062 4.062 28 C -0.212 4.212 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.142 0.858 33 H 0.156 0.844 34 H 0.138 0.862 35 H 0.180 0.820 36 H 0.421 0.579 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.218 0.782 45 H 0.100 0.900 46 H 0.385 0.615 47 H -0.254 1.254 48 H -0.306 1.306 49 H 0.119 0.881 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 8.124 -0.058 8.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.079 3.921 4 C -0.183 4.183 5 C -0.072 4.072 6 C -0.070 4.070 7 C -0.047 4.047 8 N -0.117 5.117 9 N -0.141 5.141 10 C -0.014 4.014 11 C 0.283 3.717 12 O -0.439 6.439 13 N -0.355 5.355 14 C 0.021 3.979 15 H 0.118 0.882 16 C -0.208 4.208 17 C 0.000 4.000 18 H 0.117 0.883 19 O -0.314 6.314 20 C -0.073 4.073 21 C -0.167 4.167 22 C -0.070 4.070 23 C -0.272 4.272 24 C -0.155 4.155 25 O -0.354 6.354 26 Si 0.672 3.328 27 C -0.081 4.081 28 C -0.231 4.231 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.081 0.919 32 H 0.159 0.841 33 H 0.173 0.827 34 H 0.156 0.844 35 H 0.197 0.803 36 H 0.259 0.741 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.125 0.875 43 H 0.110 0.890 44 H 0.234 0.766 45 H 0.118 0.882 46 H 0.234 0.766 47 H -0.179 1.179 48 H -0.234 1.234 49 H 0.137 0.863 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.119 7.967 0.010 8.045 hybrid contribution 0.245 -0.672 0.684 0.990 sum 1.364 7.294 0.694 7.453 Atomic orbital electron populations 1.23348 0.76492 1.05625 1.02235 1.86058 1.23429 1.26772 1.88397 1.19321 0.92715 0.84522 0.95534 1.20581 0.91501 0.99079 1.07120 1.21449 1.01468 0.89731 0.94515 1.17856 0.92501 0.89860 1.06803 1.20702 0.95395 0.92458 0.96186 1.77718 1.14240 0.95565 1.24173 1.48116 1.23034 1.10365 1.32608 1.21979 0.96573 0.79056 1.03798 1.21090 0.90518 0.81843 0.78201 1.90807 1.48518 1.61731 1.42862 1.45698 1.14582 1.16113 1.59085 1.22060 0.84082 0.93700 0.98008 0.88153 1.23996 1.00367 0.97364 0.99072 1.23573 0.99003 0.87967 0.89441 0.88283 1.87896 1.28626 1.59989 1.54879 1.22952 0.83093 0.99799 1.01440 1.23547 0.98090 0.93749 1.01321 1.22835 0.96577 0.95237 0.92367 1.20542 1.02433 0.96370 1.07903 1.24509 0.97969 0.95971 0.97053 1.86516 1.49554 1.35674 1.63617 0.94044 0.79486 0.81058 0.78253 1.21043 0.93643 0.97386 0.96040 1.21310 1.01063 0.91499 1.09224 0.91689 0.86285 0.91854 0.84060 0.82694 0.84418 0.80290 0.74073 0.91942 0.88859 0.93699 0.88811 0.92902 0.87476 0.89011 0.76563 0.88163 0.76556 1.17856 1.23442 0.86270 0.83538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 113.37 1.11 1.12 16 2 O -0.33 -2.74 10.49 -92.30 -0.97 -3.70 16 3 C 0.12 1.20 6.69 22.55 0.15 1.35 16 4 C -0.16 -1.53 9.97 22.33 0.22 -1.31 16 5 C -0.05 -0.50 9.04 22.46 0.20 -0.29 16 6 C -0.07 -0.77 5.73 -20.03 -0.11 -0.88 16 7 C 0.12 1.21 6.66 42.53 0.28 1.50 16 8 N -0.30 -3.41 11.66 -48.16 -0.56 -3.97 16 9 N -0.36 -0.83 3.41 -351.92 -1.20 -2.03 16 10 C 0.11 -0.74 6.99 85.63 0.60 -0.14 16 11 C 0.50 0.18 7.86 87.66 0.69 0.86 16 12 O -0.56 -6.85 15.29 -3.02 -0.05 -6.89 16 13 N -0.70 3.80 5.35 -440.06 -2.36 1.44 16 14 C 0.13 -0.29 4.24 45.52 0.19 -0.09 16 15 H 0.10 0.21 7.46 -2.39 -0.02 0.19 16 16 C -0.17 0.11 7.71 31.12 0.24 0.35 16 17 C 0.06 -0.11 4.31 31.12 0.13 0.03 16 18 H 0.10 -0.36 7.87 -2.39 -0.02 -0.37 16 19 O -0.40 -0.65 10.71 -148.98 -1.60 -2.25 16 20 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 21 C -0.13 0.68 7.66 31.12 0.24 0.92 16 22 C 0.08 -0.11 9.96 83.47 0.83 0.72 16 23 C -0.26 -0.95 5.34 -19.95 -0.11 -1.05 16 24 C -0.05 -0.06 2.18 71.24 0.16 0.09 16 25 O -0.55 -1.24 10.41 -148.98 -1.55 -2.79 16 26 Si 0.77 -2.53 30.84 68.60 2.12 -0.41 16 27 C -0.06 -0.69 9.77 22.46 0.22 -0.47 16 28 C -0.21 -1.80 9.02 22.33 0.20 -1.60 16 29 H 0.06 -0.08 7.65 -2.39 -0.02 -0.10 16 30 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.06 -0.06 7.66 -2.39 -0.02 -0.08 16 32 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 33 H 0.16 1.21 5.35 -2.91 -0.02 1.20 16 34 H 0.14 -1.47 8.14 -2.39 -0.02 -1.48 16 35 H 0.18 -3.11 8.07 -2.39 -0.02 -3.13 16 36 H 0.42 -5.35 8.73 -92.71 -0.81 -6.15 16 37 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 38 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.04 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.11 -0.74 8.12 -2.38 -0.02 -0.76 16 43 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 44 H 0.22 -2.32 6.34 -2.91 -0.02 -2.34 16 45 H 0.10 0.38 7.96 -2.39 -0.02 0.36 16 46 H 0.38 -1.64 8.70 -74.06 -0.64 -2.28 16 47 H -0.25 1.04 6.97 99.48 0.69 1.73 16 48 H -0.31 -1.63 7.11 99.48 0.71 -0.92 16 49 H 0.12 1.44 8.06 -2.91 -0.02 1.42 16 50 H 0.15 0.56 6.28 -2.91 -0.02 0.54 16 Total: 0.00 -31.29 417.47 -0.12 -31.41 By element: Atomic # 1 Polarization: -12.66 SS G_CDS: -0.44 Total: -13.10 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 6.48 Total: 2.28 kcal Atomic # 7 Polarization: -0.44 SS G_CDS: -4.12 Total: -4.55 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -4.16 Total: -15.63 kcal Atomic # 14 Polarization: -2.53 SS G_CDS: 2.12 Total: -0.41 kcal Total: -31.29 -0.12 -31.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_12622750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.793 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds