Wall clock time and date at job start Mon Mar 8 2021 04:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00297 * 2 1 4 4 H 1.08998 * 112.84754 * 18.80365 * 3 2 1 5 5 C 1.53774 * 113.61287 * 150.00068 * 3 2 1 6 6 C 1.53782 * 87.08431 * 140.06577 * 5 3 2 7 7 H 1.09003 * 113.61591 * 89.19300 * 6 5 3 8 8 N 1.46490 * 113.61929 * 220.01979 * 6 5 3 9 9 C 1.34779 * 120.00429 * 204.99769 * 8 6 5 10 10 O 1.21627 * 119.99319 * 359.97438 * 9 8 6 11 11 C 1.47284 * 120.00414 * 179.97438 * 9 8 6 12 12 C 1.40368 * 120.04862 * 179.97438 * 11 9 8 13 13 O 1.35679 * 120.13496 * 359.95523 * 12 11 9 14 14 C 1.38317 * 119.72790 * 179.97438 * 12 11 9 15 15 C 1.39565 * 119.81288 * 359.97438 * 14 12 11 16 16 C 1.47570 * 119.95598 * 180.02562 * 15 14 12 17 17 C 1.36105 * 125.94229 * 180.02562 * 16 15 14 18 18 C 1.40800 * 106.73149 * 179.97438 * 17 16 15 19 19 C 1.34828 * 107.04950 * 0.02562 * 18 17 16 20 20 C 1.50705 * 125.65415 * 179.97438 * 19 18 17 21 21 O 1.42897 * 109.46859 * 65.01093 * 20 19 18 22 22 Si 1.86296 * 109.47158 * 185.01393 * 20 19 18 23 23 O 1.34228 * 108.69468 * 359.97438 * 19 18 17 24 24 C 1.39962 * 120.09136 * 0.27655 * 15 14 12 25 25 C 1.36395 * 120.27693 * 359.44638 * 24 15 14 26 26 C 1.53786 * 113.69001 * 247.53740 * 3 2 1 27 27 H 1.08992 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46993 * 300.00039 * 1 2 3 29 29 H 1.09005 * 109.46892 * 59.99662 * 1 2 3 30 30 H 1.09000 * 113.62003 * 25.51614 * 5 3 2 31 31 H 1.09001 * 113.61843 * 254.61276 * 5 3 2 32 32 H 0.97000 * 120.00081 * 24.99494 * 8 6 5 33 33 H 0.96704 * 114.00131 * 270.02010 * 13 12 11 34 34 H 1.08002 * 120.09547 * 179.97438 * 14 12 11 35 35 H 1.08000 * 126.63644 * 359.73546 * 17 16 15 36 36 H 1.08003 * 126.47658 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.46928 * 305.01679 * 20 19 18 38 38 H 0.96706 * 113.99791 * 60.00933 * 21 20 19 39 39 H 1.48504 * 109.99796 * 58.68511 * 22 20 19 40 40 H 1.48498 * 109.99973 * 179.97438 * 22 20 19 41 41 H 1.07998 * 119.86420 * 179.70669 * 24 15 14 42 42 H 1.07996 * 119.91272 * 180.29758 * 25 24 15 43 43 H 1.08996 * 113.61410 * 105.46028 * 26 3 2 44 44 H 1.08999 * 113.61326 * 334.55248 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3139 2.0788 0.3238 5 6 3.3756 1.3717 0.7045 6 6 3.8222 2.3198 -0.4210 7 1 3.6223 3.3707 -0.2117 8 7 5.1929 2.0817 -0.8795 9 6 5.8940 3.0789 -1.4547 10 8 5.3882 4.1762 -1.5935 11 6 7.2723 2.8397 -1.9153 12 6 8.0031 3.8773 -2.5149 13 8 7.4421 5.1026 -2.6729 14 6 9.2973 3.6455 -2.9445 15 6 9.8677 2.3827 -2.7785 16 6 11.2485 2.1320 -3.2351 17 6 11.9214 0.9532 -3.1350 18 6 13.1966 1.1658 -3.6930 19 6 13.2401 2.4499 -4.1017 20 6 14.4166 3.1224 -4.7613 21 8 14.6613 2.5156 -6.0317 22 14 14.0443 4.9323 -4.9988 23 8 12.0621 3.0301 -3.8238 24 6 9.1303 1.3521 -2.1843 25 6 7.8558 1.5781 -1.7543 26 6 2.7532 1.6510 -1.3014 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.9095 0.4215 0.7125 31 1 3.3383 1.8456 1.6854 32 1 5.5962 1.2064 -0.7692 33 1 6.9730 5.2153 -3.5110 34 1 9.8648 4.4395 -3.4070 35 1 11.5506 0.0338 -2.7066 36 1 13.9901 0.4380 -3.7770 37 1 15.2985 3.0125 -4.1303 38 1 13.9170 2.5757 -6.6462 39 1 13.7568 5.5679 -3.6878 40 1 15.1970 5.6069 -5.6478 41 1 9.5737 0.3750 -2.0620 42 1 7.2938 0.7800 -1.2923 43 1 2.2134 2.3503 -1.9398 44 1 3.1169 0.7771 -1.8418 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_12807986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:29 Heat of formation + Delta-G solvation = -71.948103 kcal Electronic energy + Delta-G solvation = -29008.558684 eV Core-core repulsion = 24668.058971 eV Total energy + Delta-G solvation = -4340.499713 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.74965 -41.70036 -40.59486 -39.32455 -38.10191 -37.83373 -37.20274 -34.62050 -34.14779 -33.06401 -31.30174 -30.46776 -27.86733 -27.13761 -26.74683 -25.31173 -24.12333 -23.94270 -22.42113 -21.94794 -21.34877 -21.11522 -19.69363 -18.71994 -18.53805 -18.21853 -17.71047 -17.41122 -17.03401 -16.65746 -16.61941 -16.30086 -16.22015 -15.86286 -15.75542 -15.73867 -15.23845 -14.96318 -14.63470 -14.39783 -14.26701 -13.99562 -13.87862 -13.64038 -13.58950 -13.47560 -13.36970 -12.83058 -12.74996 -12.71918 -12.26809 -12.17951 -12.13582 -11.93593 -11.80216 -11.13697 -10.92128 -10.74014 -10.58742 -10.47614 -10.10425 -9.95194 -9.02150 -5.06083 -0.80050 0.14622 0.63654 1.12892 1.38891 1.45250 1.74159 1.86675 1.90378 2.00459 2.63431 2.92845 3.01583 3.28673 3.40633 3.43389 3.54217 3.61207 3.67866 3.81241 3.86972 3.89156 3.98232 4.00436 4.21773 4.30383 4.31135 4.40371 4.51943 4.55283 4.64002 4.69508 4.72192 4.72888 4.78911 4.86109 4.88093 4.94767 4.96019 5.01823 5.06806 5.11104 5.21496 5.41926 5.45873 5.53690 5.96142 6.25377 6.46049 6.59664 6.70808 7.14206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.061 3.939 4 H 0.102 0.898 5 C -0.134 4.134 6 C 0.123 3.877 7 H 0.104 0.896 8 N -0.701 5.701 9 C 0.557 3.443 10 O -0.563 6.563 11 C -0.181 4.181 12 C 0.162 3.838 13 O -0.495 6.495 14 C -0.152 4.152 15 C 0.026 3.974 16 C 0.006 3.994 17 C -0.173 4.173 18 C -0.184 4.184 19 C -0.053 4.053 20 C -0.024 4.024 21 O -0.540 6.540 22 Si 0.770 3.230 23 O -0.174 6.174 24 C -0.110 4.110 25 C -0.052 4.052 26 C -0.165 4.165 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.415 0.585 33 H 0.409 0.591 34 H 0.141 0.859 35 H 0.181 0.819 36 H 0.165 0.835 37 H 0.138 0.862 38 H 0.400 0.600 39 H -0.298 1.298 40 H -0.277 1.277 41 H 0.169 0.831 42 H 0.170 0.830 43 H 0.070 0.930 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.013 -6.004 -0.979 6.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.002 3.998 4 H 0.119 0.881 5 C -0.172 4.172 6 C 0.017 3.983 7 H 0.122 0.878 8 N -0.354 5.354 9 C 0.346 3.654 10 O -0.442 6.442 11 C -0.184 4.184 12 C 0.115 3.885 13 O -0.308 6.308 14 C -0.171 4.171 15 C 0.025 3.975 16 C -0.044 4.044 17 C -0.192 4.192 18 C -0.203 4.203 19 C -0.103 4.103 20 C -0.135 4.135 21 O -0.348 6.348 22 Si 0.675 3.325 23 O -0.072 6.072 24 C -0.128 4.128 25 C -0.070 4.070 26 C -0.204 4.204 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.253 0.747 33 H 0.269 0.731 34 H 0.159 0.841 35 H 0.199 0.801 36 H 0.183 0.817 37 H 0.155 0.845 38 H 0.250 0.750 39 H -0.225 1.225 40 H -0.203 1.203 41 H 0.186 0.814 42 H 0.188 0.812 43 H 0.088 0.912 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.330 -4.288 -0.146 4.492 hybrid contribution 0.028 -0.407 -0.052 0.411 sum -1.303 -4.694 -0.199 4.876 Atomic orbital electron populations 1.22958 0.79861 1.03719 1.00750 1.87898 1.21131 1.27700 1.94671 1.23548 0.94253 0.85591 0.96391 0.88067 1.23582 0.95059 1.00288 0.98293 1.22164 0.80332 1.00097 0.95672 0.87790 1.45717 1.14601 1.14276 1.60773 1.18271 0.85558 0.84127 0.77479 1.90815 1.71522 1.25084 1.56822 1.20532 0.94696 0.95792 1.07406 1.18482 0.91034 0.84137 0.94807 1.84730 1.72949 1.28313 1.44834 1.21589 0.95271 0.97586 1.02607 1.17945 0.88354 0.94038 0.97153 1.20569 0.91659 0.88703 1.03444 1.22241 0.94083 0.98936 1.03892 1.21836 0.99341 0.96407 1.02733 1.23233 0.87103 0.94403 1.05573 1.24411 0.93692 1.08598 0.86761 1.86534 1.44318 1.81266 1.22698 0.93368 0.84543 0.71769 0.82830 1.83919 1.22192 1.39639 1.61400 1.21048 0.93956 0.99670 0.98136 1.21161 0.94933 0.94866 0.96041 1.23980 0.97366 1.01136 0.97884 0.88847 0.93006 0.93475 0.87654 0.89228 0.74651 0.73063 0.84106 0.80119 0.81696 0.84480 0.74973 1.22505 1.20320 0.81384 0.81231 0.91151 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.40 -0.66 10.72 -148.98 -1.60 -2.25 16 3 C 0.06 -0.10 4.31 31.12 0.13 0.04 16 4 H 0.10 -0.37 7.87 -2.39 -0.02 -0.39 16 5 C -0.13 0.48 7.66 31.12 0.24 0.72 16 6 C 0.12 -0.07 4.24 45.52 0.19 0.12 16 7 H 0.10 0.33 7.46 -2.39 -0.02 0.31 16 8 N -0.70 0.89 5.30 -443.43 -2.35 -1.46 16 9 C 0.56 3.02 7.75 86.62 0.67 3.69 16 10 O -0.56 -7.71 14.74 16.88 0.25 -7.46 16 11 C -0.18 -0.42 5.89 -19.97 -0.12 -0.53 16 12 C 0.16 0.80 6.71 22.81 0.15 0.95 16 13 O -0.50 -3.62 11.56 -68.97 -0.80 -4.42 16 14 C -0.15 -0.44 9.65 22.61 0.22 -0.22 16 15 C 0.03 0.01 5.87 -20.08 -0.12 -0.11 16 16 C 0.01 0.01 7.02 24.24 0.17 0.18 16 17 C -0.17 0.25 10.26 22.40 0.23 0.47 16 18 C -0.18 0.00 10.78 22.11 0.24 0.24 16 19 C -0.05 -0.05 6.21 24.90 0.15 0.10 16 20 C -0.02 0.03 2.98 71.24 0.21 0.25 16 21 O -0.54 0.98 12.88 -148.98 -1.92 -0.94 16 22 Si 0.77 -0.60 32.11 68.60 2.20 1.60 16 23 O -0.17 -0.51 8.79 -5.92 -0.05 -0.56 16 24 C -0.11 0.53 9.48 22.26 0.21 0.74 16 25 C -0.05 0.25 9.47 22.25 0.21 0.46 16 26 C -0.16 0.15 7.71 31.12 0.24 0.39 16 27 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.05 -0.16 8.14 -2.38 -0.02 -0.18 16 30 H 0.11 -0.54 8.12 -2.39 -0.02 -0.56 16 31 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.41 -3.19 6.73 -92.71 -0.62 -3.82 16 33 H 0.41 -0.02 9.06 -74.05 -0.67 -0.70 16 34 H 0.14 0.33 7.90 -2.91 -0.02 0.31 16 35 H 0.18 -1.35 7.24 -2.91 -0.02 -1.37 16 36 H 0.17 -0.43 8.06 -2.91 -0.02 -0.45 16 37 H 0.14 -0.32 7.96 -2.39 -0.02 -0.33 16 38 H 0.40 -3.76 8.70 -74.05 -0.64 -4.41 16 39 H -0.30 -2.02 7.11 99.48 0.71 -1.31 16 40 H -0.28 -1.19 7.11 99.48 0.71 -0.49 16 41 H 0.17 -1.84 6.95 -2.91 -0.02 -1.86 16 42 H 0.17 -2.09 6.38 -2.91 -0.02 -2.11 16 43 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: 0.00 -24.55 378.43 -0.82 -25.36 By element: Atomic # 1 Polarization: -17.72 SS G_CDS: -0.82 Total: -18.54 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 4.27 Total: 8.67 kcal Atomic # 7 Polarization: 0.89 SS G_CDS: -2.35 Total: -1.46 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -4.12 Total: -15.63 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: 2.20 Total: 1.60 kcal Total: -24.55 -0.82 -25.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_12807986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.584 kcal (2) G-P(sol) polarization free energy of solvation -24.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds