Wall clock time and date at job start Mon Mar 8 2021 04:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99819 * 2 1 4 4 H 1.09003 * 112.85265 * 341.19725 * 3 2 1 5 5 C 1.53783 * 113.69000 * 112.46423 * 3 2 1 6 6 C 1.53784 * 87.08198 * 139.99044 * 5 3 2 7 7 H 1.09004 * 113.61405 * 89.11598 * 6 5 3 8 8 N 1.46491 * 113.61668 * 220.01941 * 6 5 3 9 9 C 1.34782 * 120.00006 * 252.49679 * 8 6 5 10 10 O 1.21570 * 119.99722 * 0.02562 * 9 8 6 11 11 C 1.47662 * 119.99854 * 179.97438 * 9 8 6 12 12 C 1.40008 * 120.45763 * 353.91472 * 11 9 8 13 13 N 1.31306 * 121.37995 * 179.71126 * 12 11 9 14 14 C 1.32822 * 121.88785 * 0.56177 * 13 12 11 15 15 N 1.37157 * 132.96457 * 179.73359 * 14 13 12 16 16 C 1.36947 * 110.11268 * 179.97438 * 15 14 13 17 17 C 1.34176 * 109.95433 * 0.02562 * 16 15 14 18 18 C 1.50700 * 126.59858 * 179.97438 * 17 16 15 19 19 O 1.42904 * 109.46575 * 105.00287 * 18 17 16 20 20 Si 1.86305 * 109.47281 * 345.00863 * 18 17 16 21 21 C 1.41028 * 120.08616 * 359.73450 * 14 13 12 22 22 C 1.39284 * 119.61419 * 359.97438 * 21 14 13 23 23 C 1.50703 * 121.03260 * 179.97438 * 22 21 14 24 24 C 1.53782 * 113.61214 * 209.99911 * 3 2 1 25 25 H 1.09000 * 109.47058 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47316 * 300.00333 * 1 2 3 27 27 H 1.09004 * 109.47160 * 60.00075 * 1 2 3 28 28 H 1.09000 * 113.61540 * 254.53640 * 5 3 2 29 29 H 1.08997 * 113.61702 * 25.44577 * 5 3 2 30 30 H 0.97002 * 120.00021 * 72.49631 * 8 6 5 31 31 H 1.08001 * 119.30455 * 0.02562 * 12 11 9 32 32 H 0.97002 * 124.93713 * 0.02562 * 15 14 13 33 33 H 1.08002 * 125.02166 * 179.97438 * 16 15 14 34 34 H 1.08995 * 109.47542 * 225.00388 * 18 17 16 35 35 H 0.96698 * 114.00489 * 300.00245 * 19 18 17 36 36 H 1.48495 * 109.99910 * 58.67433 * 20 18 17 37 37 H 1.48496 * 109.99807 * 179.97438 * 20 18 17 38 38 H 1.08996 * 109.47148 * 263.79192 * 23 22 21 39 39 H 1.09002 * 109.46533 * 23.78819 * 23 22 21 40 40 H 1.08996 * 109.47007 * 143.78533 * 23 22 21 41 41 H 1.09001 * 113.61761 * 334.48366 * 24 3 2 42 42 H 1.09001 * 113.61174 * 105.39098 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0790 -0.3238 5 6 2.7530 1.6511 1.3014 6 6 3.8220 2.3200 0.4211 7 1 3.6208 3.3708 0.2124 8 7 5.1928 2.0820 0.8795 9 6 5.8937 3.0792 1.4547 10 8 5.3881 4.1760 1.5935 11 6 7.2753 2.8391 1.9174 12 6 7.8224 1.5509 1.8802 13 7 9.0506 1.3179 2.2818 14 6 9.8304 2.2848 2.7520 15 7 11.1168 2.3001 3.2277 16 6 11.4671 3.5714 3.5974 17 6 10.4425 4.4101 3.3803 18 6 10.4209 5.8919 3.6539 19 8 10.5279 6.6055 2.4204 20 14 11.8535 6.3407 4.7572 21 6 9.3488 3.6082 2.8264 22 6 8.0527 3.8938 2.4037 23 6 7.5053 5.2963 2.4696 24 6 3.3755 1.3719 -0.7045 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.2132 2.3504 1.9398 29 1 3.1169 0.7773 1.8418 30 1 5.5961 1.2067 0.7691 31 1 7.2233 0.7327 1.5087 32 1 11.6945 1.5236 3.2922 33 1 12.4260 3.8565 4.0043 34 1 9.4857 6.1568 4.1470 35 1 11.3379 6.4183 1.9266 36 1 13.1332 5.9554 4.1098 37 1 11.8437 7.7996 5.0339 38 1 6.9296 5.4189 3.3869 39 1 8.3301 6.0089 2.4603 40 1 6.8607 5.4755 1.6091 41 1 3.9095 0.4217 -0.7125 42 1 3.3381 1.8459 -1.6854 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_12890568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:33 Heat of formation + Delta-G solvation = -5.453981 kcal Electronic energy + Delta-G solvation = -26415.613732 eV Core-core repulsion = 22557.198504 eV Total energy + Delta-G solvation = -3858.415228 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.86660 -41.32938 -40.04603 -38.72988 -37.86973 -37.28229 -35.11310 -34.33972 -31.94429 -30.98673 -28.93729 -27.77788 -26.75871 -26.54217 -25.42607 -24.37150 -23.65701 -21.86278 -21.07218 -20.64677 -19.36556 -18.74038 -18.18249 -17.73021 -17.44816 -16.90168 -16.73635 -16.58656 -16.21372 -16.17098 -15.86953 -15.47614 -15.45070 -15.13648 -14.85392 -14.65338 -14.15015 -14.04151 -13.74954 -13.61090 -13.46899 -13.42846 -13.22213 -13.16636 -12.72031 -12.46329 -12.15194 -12.10162 -11.84474 -11.79764 -11.21189 -11.16465 -10.61290 -10.46445 -10.28342 -10.12308 -9.63282 -9.13900 -4.83463 -0.35983 -0.09288 1.35655 1.41632 1.62585 1.67844 1.76489 2.01463 2.05269 2.74047 2.93970 3.29387 3.43967 3.46307 3.53584 3.55601 3.63114 3.69792 3.74230 3.82764 3.90265 4.13210 4.24507 4.28418 4.34949 4.50346 4.53722 4.55650 4.59548 4.68771 4.73602 4.74258 4.77858 4.86423 4.94678 4.96083 5.01499 5.03048 5.19359 5.26996 5.38419 5.50778 5.72766 6.21023 6.26476 6.45651 6.59732 6.81941 7.13783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.061 3.939 4 H 0.103 0.897 5 C -0.166 4.166 6 C 0.125 3.875 7 H 0.109 0.891 8 N -0.702 5.702 9 C 0.572 3.428 10 O -0.565 6.565 11 C -0.242 4.242 12 C 0.180 3.820 13 N -0.517 5.517 14 C 0.289 3.711 15 N -0.560 5.560 16 C 0.091 3.909 17 C -0.196 4.196 18 C -0.059 4.059 19 O -0.550 6.550 20 Si 0.780 3.220 21 C -0.166 4.166 22 C 0.064 3.936 23 C -0.122 4.122 24 C -0.135 4.135 25 H 0.092 0.908 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.413 0.587 31 H 0.192 0.808 32 H 0.438 0.562 33 H 0.221 0.779 34 H 0.109 0.891 35 H 0.385 0.615 36 H -0.258 1.258 37 H -0.308 1.308 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 -3.550 1.526 4.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.003 3.997 4 H 0.121 0.879 5 C -0.205 4.205 6 C 0.019 3.981 7 H 0.127 0.873 8 N -0.354 5.354 9 C 0.360 3.640 10 O -0.445 6.445 11 C -0.249 4.249 12 C 0.012 3.988 13 N -0.230 5.230 14 C 0.055 3.945 15 N -0.166 5.166 16 C -0.036 4.036 17 C -0.203 4.203 18 C -0.167 4.167 19 O -0.358 6.358 20 Si 0.683 3.317 21 C -0.174 4.174 22 C 0.056 3.944 23 C -0.178 4.178 24 C -0.173 4.173 25 H 0.111 0.889 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.251 0.749 31 H 0.209 0.791 32 H 0.280 0.720 33 H 0.237 0.763 34 H 0.127 0.873 35 H 0.235 0.765 36 H -0.184 1.184 37 H -0.236 1.236 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.235 -3.187 1.893 4.920 hybrid contribution -0.254 0.367 -1.207 1.286 sum 2.981 -2.820 0.687 4.161 Atomic orbital electron populations 1.22954 0.79880 1.03683 1.00761 1.87902 1.21128 1.27774 1.94669 1.23556 0.94250 0.85574 0.96345 0.87917 1.23991 0.97478 1.01145 0.97931 1.22180 0.80091 1.00263 0.95520 0.87346 1.45704 1.14679 1.14130 1.60855 1.18031 0.84978 0.84075 0.76896 1.90733 1.71256 1.24832 1.57679 1.20507 0.96205 0.95894 1.12322 1.22942 0.89189 0.94891 0.91822 1.66512 1.06006 1.34579 1.15887 1.18778 0.87858 0.90288 0.97559 1.41609 1.10122 1.11132 1.53771 1.22336 1.00405 0.81465 0.99407 1.20707 0.93244 0.96379 1.09975 1.24748 1.13040 0.86817 0.92108 1.86584 1.46451 1.68240 1.34527 0.94067 0.73407 0.79714 0.84522 1.19763 0.95228 0.94649 1.07715 1.20060 0.90613 0.96170 0.87594 1.21100 1.01579 0.91390 1.03709 1.23586 0.95048 1.00276 0.98365 0.88917 0.93483 0.92949 0.91087 0.88930 0.74866 0.79120 0.72040 0.76274 0.87262 0.76550 1.18379 1.23643 0.90403 0.89915 0.90166 0.87870 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.40 -1.09 10.72 -148.98 -1.60 -2.68 16 3 C 0.06 -0.04 4.31 31.12 0.13 0.09 16 4 H 0.10 -0.32 7.87 -2.39 -0.02 -0.34 16 5 C -0.17 -0.05 7.71 31.12 0.24 0.19 16 6 C 0.12 0.03 4.24 45.52 0.19 0.23 16 7 H 0.11 0.34 7.47 -2.39 -0.02 0.32 16 8 N -0.70 -0.28 5.31 -443.08 -2.35 -2.63 16 9 C 0.57 3.98 7.72 86.73 0.67 4.64 16 10 O -0.56 -7.61 13.09 -3.93 -0.05 -7.67 16 11 C -0.24 -1.51 5.89 -19.99 -0.12 -1.63 16 12 C 0.18 0.48 10.67 85.20 0.91 1.39 16 13 N -0.52 -2.79 10.37 -191.74 -1.99 -4.78 16 14 C 0.29 1.30 8.42 134.02 1.13 2.43 16 15 N -0.56 1.68 6.04 -192.24 -1.16 0.52 16 16 C 0.09 -0.50 10.44 82.97 0.87 0.37 16 17 C -0.20 -0.02 5.57 -18.64 -0.10 -0.12 16 18 C -0.06 0.04 1.88 71.24 0.13 0.17 16 19 O -0.55 -1.43 11.67 -148.98 -1.74 -3.17 16 20 Si 0.78 -4.03 30.83 68.60 2.11 -1.92 16 21 C -0.17 -0.98 6.16 -20.19 -0.12 -1.11 16 22 C 0.06 0.53 5.98 -19.24 -0.12 0.42 16 23 C -0.12 -1.08 8.46 71.24 0.60 -0.48 16 24 C -0.13 0.35 7.66 31.12 0.24 0.59 16 25 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 26 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 28 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.41 -2.13 6.80 -92.71 -0.63 -2.76 16 31 H 0.19 -0.97 6.43 -2.91 -0.02 -0.99 16 32 H 0.44 -3.71 8.96 -92.71 -0.83 -4.54 16 33 H 0.22 -2.97 6.28 -2.91 -0.02 -2.99 16 34 H 0.11 0.05 7.13 -2.39 -0.02 0.04 16 35 H 0.39 -1.44 8.70 -74.06 -0.64 -2.09 16 36 H -0.26 1.27 7.00 99.48 0.70 1.97 16 37 H -0.31 -1.25 7.11 99.48 0.71 -0.54 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.68 4.79 -2.39 -0.01 0.67 16 40 H 0.08 0.99 5.95 -2.39 -0.01 0.98 16 41 H 0.10 -0.36 8.12 -2.39 -0.02 -0.38 16 42 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 Total: 0.00 -23.01 343.57 -1.86 -24.87 By element: Atomic # 1 Polarization: -9.95 SS G_CDS: -0.97 Total: -10.92 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 5.88 Total: 8.38 kcal Atomic # 7 Polarization: -1.40 SS G_CDS: -5.50 Total: -6.89 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -3.39 Total: -13.51 kcal Atomic # 14 Polarization: -4.03 SS G_CDS: 2.11 Total: -1.92 kcal Total: -23.01 -1.86 -24.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_12890568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.415 kcal (2) G-P(sol) polarization free energy of solvation -23.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds