Wall clock time and date at job start Mon Mar 8 2021 04:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99753 * 2 1 4 4 H 1.08998 * 112.91091 * 341.25393 * 3 2 1 5 5 C 1.53962 * 113.66546 * 112.43913 * 3 2 1 6 6 C 1.53777 * 87.01567 * 139.93055 * 5 3 2 7 7 H 1.09008 * 113.61706 * 89.23465 * 6 5 3 8 8 N 1.46506 * 113.61540 * 220.04546 * 6 5 3 9 9 C 1.34777 * 120.00251 * 254.14207 * 8 6 5 10 10 O 1.21571 * 119.99764 * 359.97438 * 9 8 6 11 11 C 1.47716 * 119.99717 * 179.97438 * 9 8 6 12 12 C 1.39714 * 120.02264 * 179.97438 * 11 9 8 13 13 C 1.37666 * 119.97843 * 180.02562 * 12 11 9 14 14 C 1.39506 * 120.01806 * 0.02562 * 13 12 11 15 15 C 1.48285 * 119.97047 * 179.97438 * 14 13 12 16 16 C 1.39399 * 120.12707 * 179.97438 * 15 14 13 17 17 C 1.37998 * 119.87372 * 180.02562 * 16 15 14 18 18 C 1.38337 * 120.12311 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.86668 * 179.97438 * 18 17 16 20 20 O 1.42903 * 109.47186 * 65.00384 * 19 18 17 21 21 Si 1.86302 * 109.46768 * 185.00064 * 19 18 17 22 22 C 1.38327 * 120.25768 * 0.25633 * 18 17 16 23 23 C 1.37998 * 120.13031 * 359.48861 * 22 18 17 24 24 C 1.39496 * 120.05347 * 0.25249 * 14 13 12 25 25 C 1.37671 * 120.02469 * 359.44544 * 24 14 13 26 26 C 1.53777 * 113.61162 * 209.99732 * 3 2 1 27 27 H 1.09001 * 109.47135 * 59.99996 * 1 2 3 28 28 H 1.09002 * 109.47315 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47541 * 299.99897 * 1 2 3 30 30 H 1.09005 * 113.60976 * 25.41242 * 5 3 2 31 31 H 1.08995 * 113.66467 * 254.46174 * 5 3 2 32 32 H 0.96999 * 119.99685 * 74.13598 * 8 6 5 33 33 H 1.07997 * 120.01066 * 0.02562 * 12 11 9 34 34 H 1.07997 * 119.98658 * 180.02562 * 13 12 11 35 35 H 1.08002 * 120.06261 * 359.97438 * 16 15 14 36 36 H 1.07998 * 119.94032 * 180.02562 * 17 16 15 37 37 H 1.08992 * 109.47155 * 304.99981 * 19 18 17 38 38 H 0.96698 * 113.99763 * 59.99746 * 20 19 18 39 39 H 1.48504 * 109.99775 * 180.02562 * 21 19 18 40 40 H 1.48498 * 110.00038 * 301.31999 * 21 19 18 41 41 H 1.08008 * 119.93535 * 179.74256 * 22 18 17 42 42 H 1.07997 * 120.07055 * 180.25556 * 23 22 18 43 43 H 1.07998 * 119.99021 * 179.73277 * 24 14 13 44 44 H 1.07995 * 120.01088 * 180.25236 * 25 24 14 45 45 H 1.08999 * 113.61367 * 105.47800 * 26 3 2 46 46 H 1.08997 * 113.61688 * 334.57072 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0798 -0.3227 5 6 2.7532 1.6511 1.3034 6 6 3.8226 2.3181 0.4223 7 1 3.6235 3.3695 0.2143 8 7 5.1934 2.0787 0.8804 9 6 5.8841 3.0657 1.4847 10 8 5.3698 4.1549 1.6492 11 6 7.2661 2.8240 1.9471 12 6 7.9828 3.8470 2.5730 13 6 9.2708 3.6208 3.0031 14 6 9.8606 2.3709 2.8136 15 6 11.2483 2.1286 3.2767 16 6 11.8406 0.8807 3.0895 17 6 13.1321 0.6609 3.5230 18 6 13.8390 1.6762 4.1420 19 6 15.2489 1.4296 4.6138 20 8 16.0916 1.1805 3.4868 21 14 15.8673 2.9278 5.5324 22 6 13.2547 2.9151 4.3348 23 6 11.9657 3.1481 3.9007 24 6 9.1480 1.3505 2.1835 25 6 7.8576 1.5725 1.7582 26 6 3.3755 1.3719 -0.7045 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.1161 0.7769 1.8441 31 1 2.2144 2.3513 1.9416 32 1 5.6038 1.2097 0.7489 33 1 7.5265 4.8148 2.7195 34 1 9.8248 4.4113 3.4874 35 1 11.2895 0.0872 2.6067 36 1 13.5922 -0.3054 3.3781 37 1 15.2641 0.5648 5.2770 38 1 16.1262 1.9098 2.8528 39 1 17.2570 2.6975 6.0024 40 1 15.8215 4.1202 4.6486 41 1 13.8099 3.7029 4.8224 42 1 11.5119 4.1170 4.0480 43 1 9.6071 0.3845 2.0334 44 1 7.3047 0.7812 1.2740 45 1 3.3384 1.8471 -1.6847 46 1 3.9087 0.4213 -0.7137 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9984030_13158362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:37 Heat of formation + Delta-G solvation = -26.398482 kcal Electronic energy + Delta-G solvation = -27374.510039 eV Core-core repulsion = 23389.586130 eV Total energy + Delta-G solvation = -3984.923909 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.57045 -40.95406 -40.11947 -39.08663 -37.66889 -37.23833 -34.56339 -33.77177 -32.61773 -31.64159 -30.83713 -27.93920 -27.13503 -26.82219 -25.37299 -24.74009 -23.95667 -22.66891 -22.25938 -21.35774 -21.06636 -19.21944 -18.51769 -18.24968 -17.78780 -17.07928 -16.87461 -16.52299 -16.38275 -16.26463 -16.10026 -15.83318 -15.62190 -15.47474 -15.18694 -14.99295 -14.97789 -14.76107 -14.31967 -14.22939 -14.09522 -13.58462 -13.56907 -13.49468 -13.17879 -12.86871 -12.77249 -12.64013 -12.24172 -12.19252 -12.07756 -11.98289 -11.89942 -11.57817 -10.92272 -10.78684 -10.61983 -10.52368 -10.11860 -10.08061 -10.03659 -9.12693 -5.00296 -0.71664 0.28552 0.32413 0.47859 1.23322 1.54736 1.83522 1.92407 2.02485 2.57143 2.85909 2.96166 3.29521 3.34739 3.40768 3.48317 3.52408 3.61792 3.72570 3.76323 3.78124 3.82089 3.90032 3.94833 4.17606 4.20246 4.24034 4.27803 4.40849 4.42399 4.47088 4.56213 4.62510 4.63589 4.65052 4.73123 4.79429 4.84510 4.86006 4.91808 4.97704 4.99747 5.08567 5.13631 5.22809 5.35182 5.41734 5.45493 5.58623 5.74470 5.84347 6.18205 6.34491 6.44039 7.17666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.064 3.936 4 H 0.093 0.907 5 C -0.168 4.168 6 C 0.124 3.876 7 H 0.120 0.880 8 N -0.714 5.714 9 C 0.561 3.439 10 O -0.534 6.534 11 C -0.137 4.137 12 C -0.054 4.054 13 C -0.118 4.118 14 C -0.017 4.017 15 C -0.049 4.049 16 C -0.105 4.105 17 C -0.090 4.090 18 C -0.112 4.112 19 C -0.076 4.076 20 O -0.529 6.529 21 Si 0.686 3.314 22 C -0.116 4.116 23 C -0.100 4.100 24 C -0.118 4.118 25 C -0.081 4.081 26 C -0.144 4.144 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.402 0.598 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.376 0.624 39 H -0.257 1.257 40 H -0.260 1.260 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.083 0.917 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.343 -1.606 0.348 2.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.005 3.995 4 H 0.111 0.889 5 C -0.207 4.207 6 C 0.019 3.981 7 H 0.138 0.862 8 N -0.366 5.366 9 C 0.349 3.651 10 O -0.411 6.411 11 C -0.140 4.140 12 C -0.072 4.072 13 C -0.136 4.136 14 C -0.018 4.018 15 C -0.049 4.049 16 C -0.123 4.123 17 C -0.108 4.108 18 C -0.112 4.112 19 C -0.186 4.186 20 O -0.335 6.335 21 Si 0.587 3.413 22 C -0.133 4.133 23 C -0.118 4.118 24 C -0.136 4.136 25 C -0.100 4.100 26 C -0.182 4.182 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.238 0.762 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.224 0.776 39 H -0.182 1.182 40 H -0.185 1.185 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.101 0.899 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.927 -0.917 0.800 1.529 hybrid contribution 0.129 -0.322 -1.265 1.312 sum -0.797 -1.239 -0.465 1.545 Atomic orbital electron populations 1.22834 0.80711 1.03081 1.00170 1.87937 1.20047 1.26843 1.94554 1.23487 0.93737 0.85815 0.96450 0.88891 1.24054 0.97441 1.01454 0.97801 1.22230 0.80339 1.00579 0.94917 0.86231 1.45828 1.14934 1.15246 1.60568 1.18306 0.85460 0.84072 0.77284 1.90795 1.70396 1.24130 1.55819 1.19970 0.94433 0.95450 1.04143 1.21231 0.93303 0.98959 0.93748 1.21248 0.95084 0.96639 1.00624 1.18995 0.92494 0.93842 0.96421 1.18827 0.92572 0.94246 0.99214 1.21317 0.95208 0.96345 0.99396 1.20979 0.93683 0.99146 0.96998 1.20390 0.96648 0.94205 0.99982 1.25053 0.88177 1.12315 0.93067 1.86611 1.67559 1.44815 1.34542 0.94952 0.83785 0.75532 0.87029 1.21005 0.95669 0.96469 1.00185 1.21224 0.94084 0.98925 0.97584 1.21163 0.94250 0.99255 0.98926 1.21206 0.95094 0.95717 0.97990 1.23619 0.95734 1.00361 0.98478 0.93792 0.89449 0.93819 0.88706 0.90471 0.76214 0.84219 0.84739 0.85281 0.85282 0.86300 0.77612 1.18165 1.18504 0.85240 0.85056 0.84889 0.85388 0.89850 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 101.05 1.10 1.07 16 2 O -0.38 -0.48 10.72 -35.23 -0.38 -0.86 16 3 C 0.06 -0.03 4.31 -25.83 -0.11 -0.14 16 4 H 0.09 -0.15 7.87 -51.93 -0.41 -0.56 16 5 C -0.17 0.02 7.73 -25.83 -0.20 -0.18 16 6 C 0.12 -0.02 4.21 -67.12 -0.28 -0.30 16 7 H 0.12 0.11 7.50 -51.92 -0.39 -0.28 16 8 N -0.71 0.12 5.31 -54.00 -0.29 -0.17 16 9 C 0.56 1.43 7.77 -12.39 -0.10 1.33 16 10 O -0.53 -3.27 15.95 5.30 0.08 -3.19 16 11 C -0.14 -0.16 5.88 -104.93 -0.62 -0.78 16 12 C -0.05 -0.06 9.58 -39.24 -0.38 -0.44 16 13 C -0.12 0.00 9.41 -39.32 -0.37 -0.37 16 14 C -0.02 0.00 5.88 -104.82 -0.62 -0.62 16 15 C -0.05 0.00 5.88 -104.90 -0.62 -0.62 16 16 C -0.10 0.05 9.43 -39.24 -0.37 -0.32 16 17 C -0.09 0.02 9.67 -39.63 -0.38 -0.37 16 18 C -0.11 0.04 5.36 -104.55 -0.56 -0.52 16 19 C -0.08 0.05 2.80 36.01 0.10 0.15 16 20 O -0.53 -0.48 12.83 -35.23 -0.45 -0.93 16 21 Si 0.69 -0.87 29.86 -169.99 -5.08 -5.94 16 22 C -0.12 0.10 8.65 -39.64 -0.34 -0.25 16 23 C -0.10 0.06 9.43 -39.24 -0.37 -0.31 16 24 C -0.12 0.10 9.41 -39.32 -0.37 -0.27 16 25 C -0.08 0.08 9.52 -39.24 -0.37 -0.30 16 26 C -0.14 0.19 7.66 -25.92 -0.20 -0.01 16 27 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 28 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 29 H 0.04 -0.06 8.14 -51.93 -0.42 -0.49 16 30 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 31 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.40 -1.06 6.73 -40.82 -0.27 -1.33 16 33 H 0.14 0.17 7.64 -52.49 -0.40 -0.23 16 34 H 0.13 -0.26 6.19 -52.49 -0.32 -0.59 16 35 H 0.13 -0.29 6.19 -52.49 -0.33 -0.62 16 36 H 0.13 -0.11 8.06 -52.49 -0.42 -0.53 16 37 H 0.12 -0.16 7.96 -51.93 -0.41 -0.58 16 38 H 0.38 -0.68 8.70 45.56 0.40 -0.29 16 39 H -0.26 -0.55 7.11 56.52 0.40 -0.15 16 40 H -0.26 -0.16 7.01 56.52 0.40 0.24 16 41 H 0.13 -0.31 4.82 -52.48 -0.25 -0.56 16 42 H 0.13 -0.32 6.19 -52.49 -0.33 -0.64 16 43 H 0.13 -0.37 6.19 -52.49 -0.32 -0.70 16 44 H 0.13 -0.46 6.39 -52.49 -0.34 -0.80 16 45 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 46 H 0.10 -0.16 8.11 -51.93 -0.42 -0.58 16 LS Contribution 379.59 15.07 5.72 5.72 Total: 0.00 -8.34 379.59 -11.41 -19.74 By element: Atomic # 1 Polarization: -5.18 SS G_CDS: -5.96 Total: -11.14 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -5.06 Total: -3.22 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -0.29 Total: -0.17 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.75 Total: -4.98 kcal Atomic # 14 Polarization: -0.87 SS G_CDS: -5.08 Total: -5.94 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -8.34 -11.41 -19.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_13158362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.657 kcal (2) G-P(sol) polarization free energy of solvation -8.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds