Wall clock time and date at job start Mon Mar 8 2021 04:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99753 * 2 1 4 4 H 1.08998 * 112.91091 * 341.25393 * 3 2 1 5 5 C 1.53962 * 113.66546 * 112.43913 * 3 2 1 6 6 C 1.53777 * 87.01567 * 139.93055 * 5 3 2 7 7 H 1.09008 * 113.61706 * 89.23465 * 6 5 3 8 8 N 1.46506 * 113.61540 * 220.04546 * 6 5 3 9 9 C 1.34777 * 120.00251 * 254.14207 * 8 6 5 10 10 O 1.21571 * 119.99764 * 359.97438 * 9 8 6 11 11 C 1.47716 * 119.99717 * 179.97438 * 9 8 6 12 12 C 1.39714 * 120.02264 * 179.97438 * 11 9 8 13 13 C 1.37666 * 119.97843 * 180.02562 * 12 11 9 14 14 C 1.39506 * 120.01806 * 0.02562 * 13 12 11 15 15 C 1.48285 * 119.97047 * 179.97438 * 14 13 12 16 16 C 1.39399 * 120.12707 * 179.97438 * 15 14 13 17 17 C 1.37998 * 119.87372 * 180.02562 * 16 15 14 18 18 C 1.38337 * 120.12311 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.86668 * 179.97438 * 18 17 16 20 20 O 1.42903 * 109.47186 * 65.00384 * 19 18 17 21 21 Si 1.86302 * 109.46768 * 185.00064 * 19 18 17 22 22 C 1.38327 * 120.25768 * 0.25633 * 18 17 16 23 23 C 1.37998 * 120.13031 * 359.48861 * 22 18 17 24 24 C 1.39496 * 120.05347 * 0.25249 * 14 13 12 25 25 C 1.37671 * 120.02469 * 359.44544 * 24 14 13 26 26 C 1.53777 * 113.61162 * 209.99732 * 3 2 1 27 27 H 1.09001 * 109.47135 * 59.99996 * 1 2 3 28 28 H 1.09002 * 109.47315 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47541 * 299.99897 * 1 2 3 30 30 H 1.09005 * 113.60976 * 25.41242 * 5 3 2 31 31 H 1.08995 * 113.66467 * 254.46174 * 5 3 2 32 32 H 0.96999 * 119.99685 * 74.13598 * 8 6 5 33 33 H 1.07997 * 120.01066 * 0.02562 * 12 11 9 34 34 H 1.07997 * 119.98658 * 180.02562 * 13 12 11 35 35 H 1.08002 * 120.06261 * 359.97438 * 16 15 14 36 36 H 1.07998 * 119.94032 * 180.02562 * 17 16 15 37 37 H 1.08992 * 109.47155 * 304.99981 * 19 18 17 38 38 H 0.96698 * 113.99763 * 59.99746 * 20 19 18 39 39 H 1.48504 * 109.99775 * 180.02562 * 21 19 18 40 40 H 1.48498 * 110.00038 * 301.31999 * 21 19 18 41 41 H 1.08008 * 119.93535 * 179.74256 * 22 18 17 42 42 H 1.07997 * 120.07055 * 180.25556 * 23 22 18 43 43 H 1.07998 * 119.99021 * 179.73277 * 24 14 13 44 44 H 1.07995 * 120.01088 * 180.25236 * 25 24 14 45 45 H 1.08999 * 113.61367 * 105.47800 * 26 3 2 46 46 H 1.08997 * 113.61688 * 334.57072 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0798 -0.3227 5 6 2.7532 1.6511 1.3034 6 6 3.8226 2.3181 0.4223 7 1 3.6235 3.3695 0.2143 8 7 5.1934 2.0787 0.8804 9 6 5.8841 3.0657 1.4847 10 8 5.3698 4.1549 1.6492 11 6 7.2661 2.8240 1.9471 12 6 7.9828 3.8470 2.5730 13 6 9.2708 3.6208 3.0031 14 6 9.8606 2.3709 2.8136 15 6 11.2483 2.1286 3.2767 16 6 11.8406 0.8807 3.0895 17 6 13.1321 0.6609 3.5230 18 6 13.8390 1.6762 4.1420 19 6 15.2489 1.4296 4.6138 20 8 16.0916 1.1805 3.4868 21 14 15.8673 2.9278 5.5324 22 6 13.2547 2.9151 4.3348 23 6 11.9657 3.1481 3.9007 24 6 9.1480 1.3505 2.1835 25 6 7.8576 1.5725 1.7582 26 6 3.3755 1.3719 -0.7045 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.1161 0.7769 1.8441 31 1 2.2144 2.3513 1.9416 32 1 5.6038 1.2097 0.7489 33 1 7.5265 4.8148 2.7195 34 1 9.8248 4.4113 3.4874 35 1 11.2895 0.0872 2.6067 36 1 13.5922 -0.3054 3.3781 37 1 15.2641 0.5648 5.2770 38 1 16.1262 1.9098 2.8528 39 1 17.2570 2.6975 6.0024 40 1 15.8215 4.1202 4.6486 41 1 13.8099 3.7029 4.8224 42 1 11.5119 4.1170 4.0480 43 1 9.6071 0.3845 2.0334 44 1 7.3047 0.7812 1.2740 45 1 3.3384 1.8471 -1.6847 46 1 3.9087 0.4213 -0.7137 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_13158362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:36 Heat of formation + Delta-G solvation = -23.744306 kcal Electronic energy + Delta-G solvation = -27374.394945 eV Core-core repulsion = 23389.586130 eV Total energy + Delta-G solvation = -3984.808815 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.61211 -40.90558 -40.10887 -39.12573 -37.65556 -37.27577 -34.63695 -33.74962 -32.54409 -31.57478 -30.80274 -27.87328 -27.10513 -26.77333 -25.36079 -24.66677 -23.92892 -22.60450 -22.24984 -21.38884 -21.03871 -19.19372 -18.50592 -18.27098 -17.75531 -17.06072 -16.82855 -16.54511 -16.34604 -16.29636 -16.06672 -15.86647 -15.62658 -15.40429 -15.14795 -15.01014 -14.90291 -14.73619 -14.27670 -14.21416 -14.04540 -13.56984 -13.53758 -13.46862 -13.16161 -12.83548 -12.72309 -12.59411 -12.22378 -12.15993 -12.06658 -11.94323 -11.86057 -11.52629 -11.10211 -10.77638 -10.59166 -10.49547 -10.15401 -10.06743 -9.95018 -9.08230 -4.93114 -0.69740 0.34576 0.40900 0.49566 1.30099 1.58126 1.75639 1.94695 1.99584 2.59422 2.91848 3.00114 3.36419 3.40383 3.46572 3.52273 3.62897 3.66424 3.77263 3.79964 3.87435 3.87632 4.01485 4.04945 4.26597 4.27606 4.30055 4.37400 4.50699 4.54305 4.54917 4.64491 4.68452 4.69876 4.70609 4.84722 4.88775 4.91886 4.92564 4.94070 5.00397 5.08760 5.13819 5.20617 5.26037 5.41505 5.43533 5.50147 5.65442 5.79402 5.93536 6.23967 6.42299 6.46417 7.08448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.061 3.939 4 H 0.104 0.896 5 C -0.167 4.167 6 C 0.121 3.879 7 H 0.106 0.894 8 N -0.701 5.701 9 C 0.557 3.443 10 O -0.580 6.580 11 C -0.153 4.153 12 C -0.069 4.069 13 C -0.122 4.122 14 C -0.022 4.022 15 C -0.060 4.060 16 C -0.108 4.108 17 C -0.101 4.101 18 C -0.116 4.116 19 C -0.082 4.082 20 O -0.548 6.548 21 Si 0.763 3.237 22 C -0.121 4.121 23 C -0.107 4.107 24 C -0.121 4.121 25 C -0.075 4.075 26 C -0.132 4.132 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.415 0.585 33 H 0.129 0.871 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.386 0.614 39 H -0.305 1.305 40 H -0.283 1.283 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.092 0.908 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 -2.748 -0.046 3.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.003 3.997 4 H 0.121 0.879 5 C -0.206 4.206 6 C 0.016 3.984 7 H 0.124 0.876 8 N -0.352 5.352 9 C 0.347 3.653 10 O -0.461 6.461 11 C -0.156 4.156 12 C -0.088 4.088 13 C -0.140 4.140 14 C -0.022 4.022 15 C -0.060 4.060 16 C -0.125 4.125 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.191 4.191 20 O -0.356 6.356 21 Si 0.669 3.331 22 C -0.139 4.139 23 C -0.125 4.125 24 C -0.138 4.138 25 C -0.093 4.093 26 C -0.171 4.171 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.254 0.746 33 H 0.147 0.853 34 H 0.167 0.833 35 H 0.164 0.836 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.235 0.765 39 H -0.234 1.234 40 H -0.209 1.209 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.173 0.827 44 H 0.173 0.827 45 H 0.111 0.889 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.945 -2.100 0.388 2.335 hybrid contribution 0.174 0.008 -1.137 1.151 sum -0.771 -2.092 -0.749 2.352 Atomic orbital electron populations 1.22963 0.79816 1.03739 1.00787 1.87900 1.21189 1.27698 1.94654 1.23585 0.94288 0.85636 0.96186 0.87868 1.24025 0.97515 1.01104 0.97997 1.22209 0.80277 1.00219 0.95727 0.87606 1.45748 1.14782 1.15319 1.59364 1.18599 0.86031 0.83777 0.76933 1.90764 1.71464 1.25977 1.57920 1.19992 0.93898 0.96561 1.05173 1.21268 0.94040 0.98842 0.94693 1.21396 0.94673 0.97335 1.00579 1.19154 0.92688 0.94024 0.96356 1.18939 0.92626 0.94704 0.99704 1.21523 0.95206 0.96664 0.99149 1.21116 0.93999 0.99448 0.97335 1.20449 0.96622 0.94461 1.00058 1.25215 0.88069 1.13023 0.92831 1.86579 1.67938 1.45842 1.35261 0.94065 0.80544 0.73525 0.84922 1.21168 0.95814 0.96655 1.00242 1.21472 0.94203 0.99565 0.97214 1.21466 0.94165 0.99979 0.98206 1.21464 0.95219 0.95375 0.97258 1.23562 0.94987 1.00210 0.98294 0.92898 0.88848 0.93493 0.88968 0.91173 0.74640 0.85323 0.83316 0.83641 0.84920 0.85638 0.76503 1.23353 1.20918 0.83996 0.83661 0.82685 0.82660 0.88917 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.40 -0.89 10.72 -148.98 -1.60 -2.49 16 3 C 0.06 -0.07 4.31 31.18 0.13 0.07 16 4 H 0.10 -0.36 7.87 -2.39 -0.02 -0.38 16 5 C -0.17 -0.04 7.73 31.18 0.24 0.20 16 6 C 0.12 0.01 4.21 45.51 0.19 0.21 16 7 H 0.11 0.35 7.50 -2.38 -0.02 0.33 16 8 N -0.70 0.11 5.31 -443.01 -2.35 -2.24 16 9 C 0.56 3.46 7.77 86.75 0.67 4.13 16 10 O -0.58 -8.42 15.95 -3.94 -0.06 -8.48 16 11 C -0.15 -0.44 5.88 -20.06 -0.12 -0.56 16 12 C -0.07 -0.25 9.58 22.49 0.22 -0.03 16 13 C -0.12 -0.03 9.41 22.44 0.21 0.18 16 14 C -0.02 0.01 5.88 -19.99 -0.12 -0.11 16 15 C -0.06 0.05 5.88 -20.04 -0.12 -0.07 16 16 C -0.11 0.21 9.43 22.49 0.21 0.42 16 17 C -0.10 0.11 9.67 22.24 0.21 0.32 16 18 C -0.12 0.15 5.36 -19.82 -0.11 0.04 16 19 C -0.08 0.13 2.80 71.24 0.20 0.33 16 20 O -0.55 -0.98 12.83 -148.98 -1.91 -2.89 16 21 Si 0.76 -1.89 29.86 68.60 2.05 0.16 16 22 C -0.12 0.28 8.65 22.23 0.19 0.48 16 23 C -0.11 0.21 9.43 22.49 0.21 0.42 16 24 C -0.12 0.36 9.41 22.44 0.21 0.57 16 25 C -0.07 0.21 9.52 22.49 0.21 0.42 16 26 C -0.13 0.43 7.66 31.12 0.24 0.67 16 27 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 28 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H 0.05 -0.14 8.14 -2.38 -0.02 -0.16 16 30 H 0.09 0.07 8.14 -2.38 -0.02 0.05 16 31 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.41 -2.53 6.73 -92.71 -0.62 -3.16 16 33 H 0.13 0.64 7.64 -2.91 -0.02 0.62 16 34 H 0.15 -0.57 6.19 -2.91 -0.02 -0.58 16 35 H 0.15 -0.90 6.19 -2.91 -0.02 -0.92 16 36 H 0.13 -0.30 8.06 -2.91 -0.02 -0.32 16 37 H 0.13 -0.40 7.96 -2.39 -0.02 -0.41 16 38 H 0.39 -1.37 8.70 -74.06 -0.64 -2.02 16 39 H -0.31 -1.72 7.11 99.48 0.71 -1.02 16 40 H -0.28 -0.32 7.01 99.48 0.70 0.37 16 41 H 0.14 -0.79 4.82 -2.91 -0.01 -0.80 16 42 H 0.15 -0.81 6.19 -2.91 -0.02 -0.83 16 43 H 0.16 -1.22 6.19 -2.91 -0.02 -1.24 16 44 H 0.16 -1.44 6.39 -2.91 -0.02 -1.45 16 45 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 46 H 0.10 -0.46 8.11 -2.39 -0.02 -0.48 16 Total: 0.00 -20.51 379.59 0.05 -20.46 By element: Atomic # 1 Polarization: -13.18 SS G_CDS: -0.21 Total: -13.39 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 4.13 Total: 8.87 kcal Atomic # 7 Polarization: 0.11 SS G_CDS: -2.35 Total: -2.24 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -3.57 Total: -13.86 kcal Atomic # 14 Polarization: -1.89 SS G_CDS: 2.05 Total: 0.16 kcal Total: -20.51 0.05 -20.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_13158362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.285 kcal (2) G-P(sol) polarization free energy of solvation -20.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds