Wall clock time and date at job start Mon Mar 8 2021 04:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99738 * 2 1 4 4 H 1.09001 * 112.84888 * 341.20091 * 3 2 1 5 5 C 1.53780 * 113.69082 * 112.46636 * 3 2 1 6 6 C 1.53776 * 87.08281 * 139.99168 * 5 3 2 7 7 H 1.09000 * 113.69298 * 89.12934 * 6 5 3 8 8 N 1.46501 * 113.61519 * 220.02063 * 6 5 3 9 9 C 1.34781 * 119.99920 * 252.49386 * 8 6 5 10 10 O 1.21650 * 120.00014 * 0.02562 * 9 8 6 11 11 C 1.47054 * 119.99860 * 179.97438 * 9 8 6 12 12 C 1.35864 * 125.42570 * 180.02562 * 11 9 8 13 13 C 1.41593 * 107.72814 * 179.97438 * 12 11 9 14 14 C 1.40067 * 133.38047 * 179.97438 * 13 12 11 15 15 C 1.36469 * 119.83202 * 180.02562 * 14 13 12 16 16 C 1.38906 * 120.61422 * 0.02612 * 15 14 13 17 17 C 1.50699 * 119.67608 * 179.97438 * 16 15 14 18 18 O 1.42901 * 109.46830 * 119.99698 * 17 16 15 19 19 Si 1.86298 * 109.46950 * 0.02562 * 17 16 15 20 20 C 1.37713 * 120.64590 * 0.23041 * 16 15 14 21 21 C 1.39184 * 119.81377 * 359.49372 * 20 16 15 22 22 N 1.37483 * 133.19468 * 180.16395 * 21 20 16 23 23 C 1.53778 * 113.61570 * 210.00278 * 3 2 1 24 24 H 1.09002 * 109.47174 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47335 * 299.99847 * 1 2 3 26 26 H 1.09000 * 109.48009 * 59.99750 * 1 2 3 27 27 H 1.09005 * 113.61200 * 25.44412 * 5 3 2 28 28 H 1.08995 * 113.61631 * 254.54560 * 5 3 2 29 29 H 0.97000 * 119.99944 * 72.50289 * 8 6 5 30 30 H 1.07995 * 126.13621 * 0.02562 * 12 11 9 31 31 H 1.07995 * 120.08099 * 0.02902 * 14 13 12 32 32 H 1.07997 * 119.69592 * 180.02562 * 15 14 13 33 33 H 1.08991 * 109.47351 * 239.99845 * 17 16 15 34 34 H 0.96708 * 114.00246 * 299.99864 * 18 17 16 35 35 H 1.48506 * 109.99834 * 180.02562 * 19 17 16 36 36 H 1.48502 * 110.00011 * 301.31529 * 19 17 16 37 37 H 1.08004 * 120.09573 * 179.74742 * 20 16 15 38 38 H 0.97001 * 125.60208 * 0.29411 * 22 21 20 39 39 H 1.08997 * 113.61762 * 105.38585 * 23 3 2 40 40 H 1.09003 * 113.69164 * 334.49264 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3136 2.0789 -0.3237 5 6 2.7530 1.6511 1.3013 6 6 3.8219 2.3200 0.4210 7 1 3.6220 3.3709 0.2118 8 7 5.1928 2.0820 0.8795 9 6 5.8937 3.0793 1.4547 10 8 5.3878 4.1768 1.5935 11 6 7.2696 2.8402 1.9154 12 6 8.0730 3.7618 2.5079 13 6 9.3090 3.1342 2.7966 14 6 10.4969 3.5772 3.3921 15 6 11.5459 2.7163 3.5367 16 6 11.4481 1.4020 3.0980 17 6 12.6197 0.4696 3.2678 18 8 12.2313 -0.6403 4.0799 19 14 14.0228 1.3787 4.0897 20 6 10.2927 0.9442 2.5047 21 6 9.2070 1.8014 2.3512 22 7 7.9508 1.6424 1.8156 23 6 3.3754 1.3721 -0.7046 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 3.1169 0.7772 1.8417 28 1 2.2132 2.3503 1.9399 29 1 5.5961 1.2068 0.7690 30 1 7.8150 4.7885 2.7212 31 1 10.5824 4.5974 3.7359 32 1 12.4606 3.0601 3.9965 33 1 12.9422 0.1097 2.2909 34 1 11.9321 -0.3938 4.9659 35 1 15.1847 0.4701 4.2624 36 1 14.4150 2.5541 3.2713 37 1 10.2277 -0.0784 2.1632 38 1 7.6007 0.8241 1.4301 39 1 3.3380 1.8459 -1.6854 40 1 3.9104 0.4224 -0.7134 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9984030_13158378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:41 Heat of formation + Delta-G solvation = -18.507964 kcal Electronic energy + Delta-G solvation = -23596.366595 eV Core-core repulsion = 19958.348834 eV Total energy + Delta-G solvation = -3638.017761 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.70571 -41.18813 -39.84762 -38.91611 -37.34929 -36.90547 -34.37958 -33.25540 -31.11478 -30.40944 -28.04609 -27.13643 -26.88312 -25.34626 -23.94480 -22.99177 -21.99432 -21.48123 -20.98408 -19.46366 -18.48536 -18.33320 -17.72227 -17.04383 -16.75791 -16.54272 -16.37696 -16.16626 -15.96265 -15.60781 -15.40277 -15.15854 -15.00181 -14.82099 -14.59363 -14.42646 -14.07028 -13.64819 -13.57514 -13.14659 -12.90621 -12.60587 -12.54264 -12.32916 -12.26763 -11.99272 -11.96657 -11.65246 -11.23745 -10.94311 -10.58746 -10.46419 -10.25559 -9.32866 -8.83379 -5.01455 -0.35045 0.51379 0.98914 1.28989 1.65123 1.73930 1.87187 1.99649 2.23155 2.77201 2.78942 3.26712 3.39505 3.41582 3.56557 3.63090 3.67355 3.69740 3.74035 4.00124 4.16513 4.23834 4.28553 4.34633 4.38078 4.43660 4.46548 4.55731 4.56862 4.59114 4.68476 4.77459 4.83696 4.88398 4.89771 4.96099 5.22919 5.36177 5.39853 5.51919 5.60309 5.95717 6.12070 6.18074 6.33016 6.55257 6.96183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.376 6.376 3 C 0.065 3.935 4 H 0.094 0.906 5 C -0.168 4.168 6 C 0.125 3.875 7 H 0.124 0.876 8 N -0.716 5.716 9 C 0.587 3.413 10 O -0.517 6.517 11 C 0.012 3.988 12 C -0.099 4.099 13 C -0.117 4.117 14 C -0.050 4.050 15 C -0.146 4.146 16 C -0.088 4.088 17 C -0.068 4.068 18 O -0.541 6.541 19 Si 0.693 3.307 20 C -0.104 4.104 21 C 0.116 3.884 22 N -0.578 5.578 23 C -0.145 4.145 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.398 0.602 30 H 0.159 0.841 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.380 0.620 35 H -0.256 1.256 36 H -0.257 1.257 37 H 0.127 0.873 38 H 0.417 0.583 39 H 0.084 0.916 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 -1.131 0.647 2.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.006 3.994 4 H 0.112 0.888 5 C -0.207 4.207 6 C 0.020 3.980 7 H 0.141 0.859 8 N -0.367 5.367 9 C 0.374 3.626 10 O -0.392 6.392 11 C -0.097 4.097 12 C -0.126 4.126 13 C -0.122 4.122 14 C -0.069 4.069 15 C -0.165 4.165 16 C -0.090 4.090 17 C -0.179 4.179 18 O -0.346 6.346 19 Si 0.595 3.405 20 C -0.125 4.125 21 C 0.006 3.994 22 N -0.183 5.183 23 C -0.183 4.183 24 H 0.106 0.894 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.232 0.768 30 H 0.176 0.824 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.227 0.773 35 H -0.181 1.181 36 H -0.182 1.182 37 H 0.145 0.855 38 H 0.255 0.745 39 H 0.102 0.898 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.954 -0.637 0.055 1.149 hybrid contribution -0.592 -0.893 -0.847 1.366 sum -1.546 -1.530 -0.792 2.315 Atomic orbital electron populations 1.22841 0.80621 1.03130 1.00213 1.87937 1.20126 1.26779 1.94549 1.23439 0.93724 0.85918 0.96335 0.88778 1.24024 0.97373 1.01457 0.97880 1.22283 0.79831 1.00856 0.95040 0.85860 1.45800 1.15229 1.13788 1.61871 1.17226 0.83432 0.84543 0.77442 1.90878 1.69450 1.23413 1.55439 1.20081 0.93734 0.86901 1.08977 1.20981 0.91499 0.99636 1.00439 1.18229 0.95559 0.93218 1.05166 1.20382 0.90637 0.99741 0.96120 1.20490 0.99217 0.93247 1.03541 1.20040 0.95413 0.94646 0.98882 1.25081 1.01579 0.91875 0.99387 1.86500 1.87735 1.31440 1.28956 0.94551 0.77189 0.79064 0.89674 1.19862 0.90885 0.98905 1.02821 1.18311 0.86167 0.95742 0.99193 1.41896 1.11675 1.11576 1.53172 1.23636 0.95815 1.00278 0.98545 0.89418 0.93784 0.93740 0.88723 0.90299 0.76788 0.82360 0.84987 0.85334 0.86876 0.77267 1.18139 1.18211 0.85519 0.74467 0.89757 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.85 101.05 1.10 1.06 16 2 O -0.38 -0.34 10.72 -35.23 -0.38 -0.72 16 3 C 0.06 -0.06 4.31 -25.92 -0.11 -0.17 16 4 H 0.09 -0.20 7.87 -51.93 -0.41 -0.61 16 5 C -0.17 0.13 7.71 -25.92 -0.20 -0.07 16 6 C 0.12 -0.11 4.24 -67.12 -0.28 -0.40 16 7 H 0.12 0.01 7.46 -51.93 -0.39 -0.37 16 8 N -0.72 0.69 5.35 -54.21 -0.29 0.40 16 9 C 0.59 1.15 7.80 -12.68 -0.10 1.05 16 10 O -0.52 -2.82 16.44 5.23 0.09 -2.73 16 11 C 0.01 0.02 6.97 -82.29 -0.57 -0.56 16 12 C -0.10 -0.19 10.53 -39.15 -0.41 -0.60 16 13 C -0.12 -0.19 6.16 -106.93 -0.66 -0.85 16 14 C -0.05 -0.01 10.06 -39.53 -0.40 -0.41 16 15 C -0.15 0.06 8.59 -39.97 -0.34 -0.28 16 16 C -0.09 0.00 5.39 -104.57 -0.56 -0.56 16 17 C -0.07 0.04 2.81 36.01 0.10 0.14 16 18 O -0.54 0.09 12.76 -35.23 -0.45 -0.36 16 19 Si 0.69 -0.88 29.75 -169.99 -5.06 -5.94 16 20 C -0.10 -0.04 9.62 -39.42 -0.38 -0.42 16 21 C 0.12 0.11 7.25 -83.97 -0.61 -0.49 16 22 N -0.58 0.35 6.07 -7.36 -0.04 0.30 16 23 C -0.14 0.27 7.66 -25.92 -0.20 0.07 16 24 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 25 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 26 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 27 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 28 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.40 -1.38 7.78 -40.82 -0.32 -1.70 16 30 H 0.16 0.19 8.06 -52.49 -0.42 -0.23 16 31 H 0.13 -0.23 8.06 -52.49 -0.42 -0.66 16 32 H 0.13 -0.29 4.82 -52.49 -0.25 -0.55 16 33 H 0.11 -0.02 7.96 -51.93 -0.41 -0.43 16 34 H 0.38 -1.47 8.70 45.56 0.40 -1.08 16 35 H -0.26 -0.52 7.11 56.52 0.40 -0.12 16 36 H -0.26 -0.27 7.11 56.52 0.40 0.13 16 37 H 0.13 -0.06 8.06 -52.48 -0.42 -0.48 16 38 H 0.42 -1.50 8.12 -40.82 -0.33 -1.83 16 39 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 40 H 0.10 -0.20 8.12 -51.93 -0.42 -0.62 16 LS Contribution 339.11 15.07 5.11 5.11 Total: 0.00 -8.35 339.11 -9.80 -18.15 By element: Atomic # 1 Polarization: -6.57 SS G_CDS: -5.14 Total: -11.71 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -3.63 Total: -2.50 kcal Atomic # 7 Polarization: 1.03 SS G_CDS: -0.33 Total: 0.70 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: -0.74 Total: -3.82 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: -5.06 Total: -5.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -8.35 -9.80 -18.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_13158378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.360 kcal (2) G-P(sol) polarization free energy of solvation -8.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds