Wall clock time and date at job start Mon Mar 8 2021 04:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99738 * 2 1 4 4 H 1.09001 * 112.84888 * 341.20091 * 3 2 1 5 5 C 1.53780 * 113.69082 * 112.46636 * 3 2 1 6 6 C 1.53776 * 87.08281 * 139.99168 * 5 3 2 7 7 H 1.09000 * 113.69298 * 89.12934 * 6 5 3 8 8 N 1.46501 * 113.61519 * 220.02063 * 6 5 3 9 9 C 1.34781 * 119.99920 * 252.49386 * 8 6 5 10 10 O 1.21650 * 120.00014 * 0.02562 * 9 8 6 11 11 C 1.47054 * 119.99860 * 179.97438 * 9 8 6 12 12 C 1.35864 * 125.42570 * 180.02562 * 11 9 8 13 13 C 1.41593 * 107.72814 * 179.97438 * 12 11 9 14 14 C 1.40067 * 133.38047 * 179.97438 * 13 12 11 15 15 C 1.36469 * 119.83202 * 180.02562 * 14 13 12 16 16 C 1.38906 * 120.61422 * 0.02612 * 15 14 13 17 17 C 1.50699 * 119.67608 * 179.97438 * 16 15 14 18 18 O 1.42901 * 109.46830 * 119.99698 * 17 16 15 19 19 Si 1.86298 * 109.46950 * 0.02562 * 17 16 15 20 20 C 1.37713 * 120.64590 * 0.23041 * 16 15 14 21 21 C 1.39184 * 119.81377 * 359.49372 * 20 16 15 22 22 N 1.37483 * 133.19468 * 180.16395 * 21 20 16 23 23 C 1.53778 * 113.61570 * 210.00278 * 3 2 1 24 24 H 1.09002 * 109.47174 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47335 * 299.99847 * 1 2 3 26 26 H 1.09000 * 109.48009 * 59.99750 * 1 2 3 27 27 H 1.09005 * 113.61200 * 25.44412 * 5 3 2 28 28 H 1.08995 * 113.61631 * 254.54560 * 5 3 2 29 29 H 0.97000 * 119.99944 * 72.50289 * 8 6 5 30 30 H 1.07995 * 126.13621 * 0.02562 * 12 11 9 31 31 H 1.07995 * 120.08099 * 0.02902 * 14 13 12 32 32 H 1.07997 * 119.69592 * 180.02562 * 15 14 13 33 33 H 1.08991 * 109.47351 * 239.99845 * 17 16 15 34 34 H 0.96708 * 114.00246 * 299.99864 * 18 17 16 35 35 H 1.48506 * 109.99834 * 180.02562 * 19 17 16 36 36 H 1.48502 * 110.00011 * 301.31529 * 19 17 16 37 37 H 1.08004 * 120.09573 * 179.74742 * 20 16 15 38 38 H 0.97001 * 125.60208 * 0.29411 * 22 21 20 39 39 H 1.08997 * 113.61762 * 105.38585 * 23 3 2 40 40 H 1.09003 * 113.69164 * 334.49264 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3136 2.0789 -0.3237 5 6 2.7530 1.6511 1.3013 6 6 3.8219 2.3200 0.4210 7 1 3.6220 3.3709 0.2118 8 7 5.1928 2.0820 0.8795 9 6 5.8937 3.0793 1.4547 10 8 5.3878 4.1768 1.5935 11 6 7.2696 2.8402 1.9154 12 6 8.0730 3.7618 2.5079 13 6 9.3090 3.1342 2.7966 14 6 10.4969 3.5772 3.3921 15 6 11.5459 2.7163 3.5367 16 6 11.4481 1.4020 3.0980 17 6 12.6197 0.4696 3.2678 18 8 12.2313 -0.6403 4.0799 19 14 14.0228 1.3787 4.0897 20 6 10.2927 0.9442 2.5047 21 6 9.2070 1.8014 2.3512 22 7 7.9508 1.6424 1.8156 23 6 3.3754 1.3721 -0.7046 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 3.1169 0.7772 1.8417 28 1 2.2132 2.3503 1.9399 29 1 5.5961 1.2068 0.7690 30 1 7.8150 4.7885 2.7212 31 1 10.5824 4.5974 3.7359 32 1 12.4606 3.0601 3.9965 33 1 12.9422 0.1097 2.2909 34 1 11.9321 -0.3938 4.9659 35 1 15.1847 0.4701 4.2624 36 1 14.4150 2.5541 3.2713 37 1 10.2277 -0.0784 2.1632 38 1 7.6007 0.8241 1.4301 39 1 3.3380 1.8459 -1.6854 40 1 3.9104 0.4224 -0.7134 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_13158378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:40 Heat of formation + Delta-G solvation = -19.258647 kcal Electronic energy + Delta-G solvation = -23596.399147 eV Core-core repulsion = 19958.348834 eV Total energy + Delta-G solvation = -3638.050313 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.73535 -41.20110 -39.88710 -38.92058 -37.34815 -36.88303 -34.43077 -33.27083 -31.12990 -30.41228 -27.96874 -27.13077 -26.79732 -25.32032 -23.92172 -23.02790 -22.00302 -21.50427 -20.97819 -19.47637 -18.47606 -18.29898 -17.70709 -16.98269 -16.77765 -16.60720 -16.38156 -16.11789 -15.95358 -15.60083 -15.41314 -15.13227 -15.03508 -14.80143 -14.62800 -14.47224 -14.10534 -13.57592 -13.51520 -13.14722 -12.82128 -12.59103 -12.52601 -12.28120 -12.20473 -12.02782 -11.91604 -11.64268 -11.39877 -10.98127 -10.52596 -10.43190 -10.29329 -9.34456 -8.84944 -4.93938 -0.39815 0.51609 0.91253 1.34936 1.68139 1.71510 1.89901 2.02321 2.12432 2.76318 2.88110 3.34294 3.46976 3.49114 3.60004 3.69292 3.72679 3.74303 3.83918 4.03046 4.23297 4.26148 4.29212 4.43703 4.48290 4.49746 4.52615 4.61437 4.65774 4.66369 4.81823 4.86627 4.87452 4.90159 4.94467 4.98041 5.24526 5.36934 5.39952 5.52413 5.56630 5.96754 6.19072 6.23487 6.39281 6.79519 6.88502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.062 3.938 4 H 0.105 0.895 5 C -0.167 4.167 6 C 0.122 3.878 7 H 0.113 0.887 8 N -0.701 5.701 9 C 0.588 3.412 10 O -0.558 6.558 11 C 0.008 3.992 12 C -0.115 4.115 13 C -0.135 4.135 14 C -0.057 4.057 15 C -0.148 4.148 16 C -0.088 4.088 17 C -0.072 4.072 18 O -0.555 6.555 19 Si 0.778 3.222 20 C -0.111 4.111 21 C 0.107 3.893 22 N -0.565 5.565 23 C -0.134 4.134 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.411 0.589 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.109 0.891 34 H 0.396 0.604 35 H -0.302 1.302 36 H -0.285 1.285 37 H 0.134 0.866 38 H 0.431 0.569 39 H 0.093 0.907 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.454 -1.735 0.586 2.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.003 3.997 4 H 0.123 0.877 5 C -0.206 4.206 6 C 0.018 3.982 7 H 0.131 0.869 8 N -0.352 5.352 9 C 0.375 3.625 10 O -0.437 6.437 11 C -0.102 4.102 12 C -0.143 4.143 13 C -0.140 4.140 14 C -0.075 4.075 15 C -0.166 4.166 16 C -0.090 4.090 17 C -0.182 4.182 18 O -0.363 6.363 19 Si 0.685 3.315 20 C -0.132 4.132 21 C -0.003 4.003 22 N -0.171 5.171 23 C -0.173 4.173 24 H 0.111 0.889 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.248 0.752 30 H 0.174 0.826 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.126 0.874 34 H 0.246 0.754 35 H -0.231 1.231 36 H -0.212 1.212 37 H 0.152 0.848 38 H 0.271 0.729 39 H 0.111 0.889 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.893 -1.296 -0.011 1.574 hybrid contribution -0.596 -0.755 -0.826 1.268 sum -1.489 -2.051 -0.836 2.669 Atomic orbital electron populations 1.22963 0.79772 1.03722 1.00844 1.87900 1.21227 1.27740 1.94660 1.23552 0.94262 0.85695 0.96181 0.87688 1.23992 0.97415 1.01135 0.98033 1.22276 0.79636 1.00619 0.95716 0.86920 1.45706 1.15079 1.13847 1.60545 1.17318 0.83639 0.84356 0.77186 1.90852 1.70346 1.25083 1.57371 1.19976 0.93505 0.87543 1.09161 1.21115 0.92106 0.99934 1.01097 1.18446 0.95946 0.93653 1.05922 1.20643 0.90293 1.00762 0.95845 1.20701 0.99717 0.92977 1.03222 1.20167 0.95387 0.94924 0.98535 1.25174 1.01697 0.91839 0.99454 1.86466 1.87837 1.31832 1.30192 0.93560 0.74277 0.75841 0.87832 1.19988 0.90878 0.99218 1.03074 1.18456 0.86672 0.95776 0.99417 1.41798 1.11098 1.11576 1.52635 1.23584 0.95115 1.00131 0.98422 0.88930 0.93409 0.92863 0.89042 0.90797 0.75188 0.82554 0.83358 0.83546 0.87362 0.75417 1.23066 1.21214 0.84817 0.72878 0.88872 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.40 -0.63 10.72 -148.98 -1.60 -2.23 16 3 C 0.06 -0.13 4.31 31.12 0.13 0.00 16 4 H 0.11 -0.48 7.87 -2.39 -0.02 -0.50 16 5 C -0.17 0.20 7.71 31.12 0.24 0.44 16 6 C 0.12 -0.18 4.24 45.52 0.19 0.01 16 7 H 0.11 0.14 7.46 -2.39 -0.02 0.12 16 8 N -0.70 1.17 5.35 -443.65 -2.37 -1.20 16 9 C 0.59 2.85 7.80 86.55 0.68 3.53 16 10 O -0.56 -7.03 16.44 -4.19 -0.07 -7.10 16 11 C 0.01 0.03 6.97 39.91 0.28 0.30 16 12 C -0.12 -0.57 10.53 22.55 0.24 -0.33 16 13 C -0.14 -0.48 6.16 -21.36 -0.13 -0.62 16 14 C -0.06 -0.01 10.06 22.30 0.22 0.21 16 15 C -0.15 0.23 8.59 22.02 0.19 0.42 16 16 C -0.09 0.05 5.39 -19.83 -0.11 -0.06 16 17 C -0.07 0.12 2.81 71.24 0.20 0.32 16 18 O -0.56 0.58 12.76 -148.98 -1.90 -1.32 16 19 Si 0.78 -2.28 29.75 68.60 2.04 -0.24 16 20 C -0.11 -0.06 9.62 22.37 0.22 0.16 16 21 C 0.11 0.21 7.25 39.14 0.28 0.50 16 22 N -0.57 0.66 6.07 -177.19 -1.08 -0.42 16 23 C -0.13 0.56 7.66 31.12 0.24 0.80 16 24 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 25 H 0.05 -0.17 8.14 -2.38 -0.02 -0.19 16 26 H 0.05 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 28 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.41 -3.02 7.78 -92.71 -0.72 -3.74 16 30 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 31 H 0.15 -0.58 8.06 -2.91 -0.02 -0.61 16 32 H 0.15 -0.85 4.82 -2.91 -0.01 -0.87 16 33 H 0.11 -0.07 7.96 -2.39 -0.02 -0.09 16 34 H 0.40 -3.48 8.70 -74.05 -0.64 -4.12 16 35 H -0.30 -1.46 7.11 99.48 0.71 -0.76 16 36 H -0.29 -0.50 7.11 99.48 0.71 0.20 16 37 H 0.13 -0.18 8.06 -2.91 -0.02 -0.21 16 38 H 0.43 -3.27 8.12 -92.71 -0.75 -4.02 16 39 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.10 -0.52 8.12 -2.39 -0.02 -0.54 16 Total: 0.00 -19.78 339.11 -1.86 -21.63 By element: Atomic # 1 Polarization: -15.01 SS G_CDS: -0.98 Total: -15.99 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 4.10 Total: 6.87 kcal Atomic # 7 Polarization: 1.83 SS G_CDS: -3.45 Total: -1.62 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -3.57 Total: -10.64 kcal Atomic # 14 Polarization: -2.28 SS G_CDS: 2.04 Total: -0.24 kcal Total: -19.78 -1.86 -21.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_13158378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.376 kcal (2) G-P(sol) polarization free energy of solvation -19.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds