Wall clock time and date at job start Mon Mar 8 2021 04:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00046 * 2 1 4 4 H 1.08995 * 112.84571 * 341.19758 * 3 2 1 5 5 C 1.53776 * 113.68813 * 112.46761 * 3 2 1 6 6 C 1.53785 * 87.08197 * 139.99282 * 5 3 2 7 7 H 1.08994 * 113.69349 * 89.12639 * 6 5 3 8 8 N 1.46505 * 113.61203 * 220.01850 * 6 5 3 9 9 C 1.34777 * 119.99761 * 252.49236 * 8 6 5 10 10 O 1.21281 * 119.99878 * 0.02562 * 9 8 6 11 11 C 1.50693 * 119.99696 * 180.02562 * 9 8 6 12 12 C 1.50705 * 109.47203 * 185.65441 * 11 9 8 13 13 C 1.39321 * 120.06165 * 83.97013 * 12 11 9 14 14 C 1.48387 * 120.11946 * 359.96241 * 13 12 11 15 15 C 1.39340 * 120.12070 * 236.10259 * 14 13 12 16 16 C 1.38017 * 119.87543 * 179.69678 * 15 14 13 17 17 C 1.38320 * 120.12224 * 0.60056 * 16 15 14 18 18 C 1.50700 * 119.87554 * 179.69497 * 17 16 15 19 19 O 1.42908 * 109.46836 * 119.97983 * 18 17 16 20 20 Si 1.86292 * 109.47382 * 359.97438 * 18 17 16 21 21 C 1.38317 * 120.24539 * 359.67303 * 17 16 15 22 22 C 1.38020 * 120.11825 * 0.02682 * 21 17 16 23 23 C 1.39353 * 119.75565 * 179.97438 * 13 12 11 24 24 C 1.37990 * 119.88229 * 359.97438 * 23 13 12 25 25 C 1.38344 * 120.11875 * 0.02562 * 24 23 13 26 26 C 1.38040 * 120.06004 * 263.95537 * 12 11 9 27 27 C 1.53781 * 113.61198 * 210.00209 * 3 2 1 28 28 H 1.09002 * 109.47159 * 300.00084 * 1 2 3 29 29 H 1.09001 * 109.47312 * 59.99624 * 1 2 3 30 30 H 1.08999 * 109.47394 * 180.02562 * 1 2 3 31 31 H 1.09006 * 113.61588 * 25.44019 * 5 3 2 32 32 H 1.08998 * 113.61596 * 254.54117 * 5 3 2 33 33 H 0.96999 * 119.99644 * 72.49679 * 8 6 5 34 34 H 1.09001 * 109.47263 * 65.65921 * 11 9 8 35 35 H 1.08996 * 109.47500 * 305.65555 * 11 9 8 36 36 H 1.08000 * 120.05762 * 359.97438 * 15 14 13 37 37 H 1.07998 * 119.93924 * 180.31546 * 16 15 14 38 38 H 1.09001 * 109.47239 * 239.97163 * 18 17 16 39 39 H 0.96702 * 113.99893 * 180.02562 * 19 18 17 40 40 H 1.48499 * 109.99819 * 298.67728 * 20 18 17 41 41 H 1.48498 * 110.00342 * 59.99702 * 20 18 17 42 42 H 1.08000 * 119.94375 * 179.97438 * 21 17 16 43 43 H 1.08006 * 120.06073 * 179.97438 * 22 21 17 44 44 H 1.08005 * 120.05467 * 179.72641 * 23 13 12 45 45 H 1.08006 * 119.94467 * 179.97438 * 24 23 13 46 46 H 1.08002 * 119.87533 * 180.02562 * 25 24 23 47 47 H 1.07999 * 119.94313 * 0.03825 * 26 12 11 48 48 H 1.08993 * 113.61561 * 105.39105 * 27 3 2 49 49 H 1.09005 * 113.69556 * 334.49376 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0788 -0.3237 5 6 2.7531 1.6510 1.3013 6 6 3.8220 2.3199 0.4210 7 1 3.6222 3.3707 0.2117 8 7 5.1929 2.0818 0.8795 9 6 5.8939 3.0790 1.4547 10 8 5.3895 4.1732 1.5931 11 6 7.3042 2.8342 1.9258 12 6 7.8109 4.0548 2.6500 13 6 7.5135 4.2399 3.9985 14 6 6.6967 3.2367 4.7254 15 6 5.5285 3.6261 5.3776 16 6 4.7693 2.6877 6.0468 17 6 5.1727 1.3651 6.0813 18 6 4.3431 0.3463 6.8195 19 8 3.9125 -0.6674 5.9089 20 14 2.8555 1.1814 7.5681 21 6 6.3344 0.9740 5.4405 22 6 7.0980 1.9029 4.7630 23 6 7.9858 5.3706 4.6620 24 6 8.7452 6.3002 3.9813 25 6 9.0374 6.1114 2.6423 26 6 8.5708 4.9914 1.9786 27 6 3.3755 1.3719 -0.7046 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1168 0.7770 1.8417 32 1 2.2133 2.3502 1.9398 33 1 5.5961 1.2065 0.7690 34 1 7.9437 2.6296 1.0672 35 1 7.3183 1.9789 2.6014 36 1 5.2155 4.6595 5.3556 37 1 3.8611 2.9875 6.5484 38 1 4.9419 -0.1061 7.6100 39 1 3.3719 -1.3581 6.3162 40 1 3.2898 2.2160 8.5408 41 1 2.0307 1.8022 6.5006 42 1 6.6449 -0.0600 5.4709 43 1 8.0051 1.5965 4.2633 44 1 7.7544 5.5211 5.7062 45 1 9.1114 7.1771 4.4945 46 1 9.6325 6.8412 2.1135 47 1 8.8016 4.8492 0.9332 48 1 3.3381 1.8458 -1.6854 49 1 3.9105 0.4222 -0.7135 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_13158394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:43 Heat of formation + Delta-G solvation = -25.995385 kcal Electronic energy + Delta-G solvation = -31788.483782 eV Core-core repulsion = 27648.039734 eV Total energy + Delta-G solvation = -4140.444048 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.67345 -40.95480 -40.02023 -39.38778 -37.55604 -37.29962 -34.56198 -34.13139 -33.42783 -32.15451 -30.85929 -29.01848 -27.74649 -26.83024 -26.62036 -25.02247 -24.12902 -23.43729 -22.73788 -21.81371 -21.48649 -20.92571 -18.43860 -18.39960 -18.29519 -18.03041 -17.15121 -17.04664 -16.88746 -16.58993 -16.47870 -16.14726 -16.05438 -15.76462 -15.52560 -15.17532 -15.10699 -14.80506 -14.70463 -14.48821 -14.15057 -13.94492 -13.92231 -13.61480 -13.53847 -13.47165 -13.31198 -12.98674 -12.81198 -12.61788 -12.29924 -12.24948 -12.17877 -12.15310 -12.03236 -11.91918 -11.71537 -11.02691 -10.53934 -10.46244 -10.18221 -10.10519 -10.09144 -9.80394 -9.30932 -5.03348 -0.21956 0.20208 0.34490 0.51801 1.24648 1.55181 1.55902 1.91703 2.08301 2.46827 2.76624 2.93676 3.33593 3.37898 3.45089 3.47604 3.60995 3.68219 3.74174 3.75549 3.79253 3.86820 3.92635 3.97967 4.11079 4.20098 4.25494 4.27080 4.36242 4.43351 4.47304 4.48247 4.50291 4.53426 4.61838 4.63446 4.66467 4.75539 4.80652 4.83938 4.87209 4.89005 4.91083 4.98583 5.05466 5.19854 5.28462 5.32929 5.44528 5.46135 5.51863 5.56767 5.78596 5.98767 6.20115 6.48357 6.88010 7.19288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.394 6.394 3 C 0.064 3.936 4 H 0.101 0.899 5 C -0.167 4.167 6 C 0.124 3.876 7 H 0.100 0.900 8 N -0.708 5.708 9 C 0.517 3.483 10 O -0.577 6.577 11 C -0.111 4.111 12 C -0.062 4.062 13 C -0.054 4.054 14 C -0.041 4.041 15 C -0.111 4.111 16 C -0.139 4.139 17 C -0.088 4.088 18 C -0.070 4.070 19 O -0.559 6.559 20 Si 0.765 3.235 21 C -0.086 4.086 22 C -0.109 4.109 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.129 4.129 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.416 0.584 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.404 0.596 40 H -0.292 1.292 41 H -0.306 1.306 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.125 0.875 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.141 0.859 48 H 0.093 0.907 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 -6.022 0.066 6.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.312 6.312 3 C 0.005 3.995 4 H 0.119 0.881 5 C -0.207 4.207 6 C 0.019 3.981 7 H 0.119 0.881 8 N -0.359 5.359 9 C 0.305 3.695 10 O -0.456 6.456 11 C -0.150 4.150 12 C -0.062 4.062 13 C -0.054 4.054 14 C -0.041 4.041 15 C -0.129 4.129 16 C -0.156 4.156 17 C -0.088 4.088 18 C -0.181 4.181 19 O -0.369 6.369 20 Si 0.673 3.327 21 C -0.104 4.104 22 C -0.127 4.127 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.140 4.140 26 C -0.133 4.133 27 C -0.167 4.167 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.253 0.747 34 H 0.154 0.846 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.255 0.745 40 H -0.219 1.219 41 H -0.234 1.234 42 H 0.168 0.832 43 H 0.170 0.830 44 H 0.143 0.857 45 H 0.159 0.841 46 H 0.161 0.839 47 H 0.159 0.841 48 H 0.112 0.888 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.518 -4.326 -0.134 4.359 hybrid contribution 0.018 0.546 0.042 0.548 sum 0.536 -3.780 -0.092 3.819 Atomic orbital electron populations 1.22965 0.79829 1.03855 1.00642 1.87904 1.21187 1.27518 1.94624 1.23527 0.94388 0.85654 0.95913 0.88117 1.23958 0.97954 1.00785 0.97969 1.22080 0.80876 0.99749 0.95426 0.88150 1.45817 1.14380 1.14611 1.61137 1.20943 0.88378 0.83875 0.76345 1.90710 1.72178 1.26000 1.56673 1.20964 0.92765 0.98155 1.03083 1.19441 0.97695 0.96641 0.92453 1.18702 0.98212 0.95037 0.93452 1.18866 0.94277 0.93770 0.97195 1.21142 0.94925 0.99418 0.97463 1.20864 0.99418 0.94120 1.01234 1.19725 0.96547 0.92878 0.99668 1.24658 1.04849 0.93258 0.95295 1.86436 1.73965 1.38726 1.37762 0.94723 0.78353 0.81929 0.77732 1.21164 0.93180 1.00572 0.95507 1.21509 1.00516 0.91309 0.99363 1.21343 0.98489 0.93698 1.00315 1.21372 0.98333 0.99435 0.95146 1.21508 0.99794 0.97846 0.94825 1.21242 0.97569 0.93950 1.00513 1.23530 0.94709 1.00223 0.98198 0.93852 0.92821 0.88561 0.89408 0.92555 0.74658 0.84633 0.86063 0.86550 0.87346 0.88124 0.74517 1.21934 1.23440 0.83215 0.82957 0.85657 0.84099 0.83862 0.84133 0.88836 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 10.85 113.37 1.23 1.22 16 2 O -0.39 -1.78 10.72 -148.98 -1.60 -3.37 16 3 C 0.06 0.11 4.31 31.12 0.13 0.25 16 4 H 0.10 -0.05 7.87 -2.39 -0.02 -0.07 16 5 C -0.17 -0.77 7.71 31.12 0.24 -0.53 16 6 C 0.12 0.37 4.24 45.52 0.19 0.57 16 7 H 0.10 0.67 7.46 -2.39 -0.02 0.65 16 8 N -0.71 -1.04 5.35 -440.03 -2.36 -3.39 16 9 C 0.52 3.35 7.80 87.65 0.68 4.03 16 10 O -0.58 -9.27 15.65 -3.03 -0.05 -9.32 16 11 C -0.11 -0.06 5.33 29.10 0.15 0.10 16 12 C -0.06 -0.33 4.38 -19.65 -0.09 -0.42 16 13 C -0.05 -0.41 5.40 -20.04 -0.11 -0.52 16 14 C -0.04 -0.30 4.90 -20.04 -0.10 -0.40 16 15 C -0.11 -1.14 9.62 22.48 0.22 -0.93 16 16 C -0.14 -1.32 8.65 22.24 0.19 -1.13 16 17 C -0.09 -0.52 5.43 -19.83 -0.11 -0.63 16 18 C -0.07 -0.01 2.81 71.24 0.20 0.19 16 19 O -0.56 0.30 12.74 -148.98 -1.90 -1.59 16 20 Si 0.76 0.44 29.78 68.60 2.04 2.48 16 21 C -0.09 -0.27 9.59 22.24 0.21 -0.06 16 22 C -0.11 -0.34 7.75 22.48 0.17 -0.16 16 23 C -0.12 -0.81 9.62 22.48 0.22 -0.60 16 24 C -0.13 -0.55 10.03 22.24 0.22 -0.32 16 25 C -0.12 -0.42 10.04 22.31 0.22 -0.20 16 26 C -0.11 -0.45 9.67 22.24 0.21 -0.24 16 27 C -0.13 0.12 7.66 31.12 0.24 0.36 16 28 H 0.04 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.42 -1.88 8.73 -92.71 -0.81 -2.69 16 34 H 0.14 -0.79 8.05 -2.39 -0.02 -0.81 16 35 H 0.12 -0.28 4.69 -2.39 -0.01 -0.29 16 36 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.11 1.07 4.86 -2.91 -0.01 1.06 16 38 H 0.10 -0.47 7.96 -2.39 -0.02 -0.49 16 39 H 0.40 -4.38 8.74 -74.06 -0.65 -5.03 16 40 H -0.29 -1.86 7.11 99.48 0.71 -1.16 16 41 H -0.31 -2.93 7.11 99.48 0.71 -2.22 16 42 H 0.15 -0.16 8.06 -2.91 -0.02 -0.18 16 43 H 0.15 -0.32 7.14 -2.91 -0.02 -0.34 16 44 H 0.13 0.62 8.06 -2.91 -0.02 0.60 16 45 H 0.14 0.01 8.06 -2.91 -0.02 -0.01 16 46 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16 47 H 0.14 -0.06 8.06 -2.91 -0.02 -0.09 16 48 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 49 H 0.10 -0.23 8.12 -2.38 -0.02 -0.25 16 Total: 0.00 -24.76 405.06 0.05 -24.71 By element: Atomic # 1 Polarization: -9.67 SS G_CDS: -0.44 Total: -10.11 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 4.35 Total: 0.59 kcal Atomic # 7 Polarization: -1.04 SS G_CDS: -2.36 Total: -3.39 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -3.54 Total: -14.28 kcal Atomic # 14 Polarization: 0.44 SS G_CDS: 2.04 Total: 2.48 kcal Total: -24.76 0.05 -24.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_13158394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.285 kcal (2) G-P(sol) polarization free energy of solvation -24.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds