Wall clock time and date at job start Mon Mar 8 2021 04:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99963 * 2 1 4 4 H 1.09001 * 112.85401 * 18.80370 * 3 2 1 5 5 C 1.53782 * 113.61635 * 149.99610 * 3 2 1 6 6 C 1.53780 * 87.08099 * 139.98068 * 5 3 2 7 7 H 1.09004 * 113.61645 * 89.20255 * 6 5 3 8 8 N 1.46504 * 113.61750 * 220.01705 * 6 5 3 9 9 C 1.34770 * 120.00320 * 203.47233 * 8 6 5 10 10 O 1.21587 * 120.00205 * 0.02562 * 9 8 6 11 11 C 1.47567 * 120.00137 * 180.02562 * 9 8 6 12 12 C 1.40209 * 120.12539 * 179.97438 * 11 9 8 13 13 O 1.35654 * 120.00032 * 0.04795 * 12 11 9 14 14 C 1.38813 * 119.99761 * 180.02562 * 12 11 9 15 15 C 1.37765 * 120.24669 * 0.02562 * 14 12 11 16 16 C 1.39848 * 120.24615 * 359.97438 * 15 14 12 17 17 C 1.47809 * 120.00334 * 179.97438 * 16 15 14 18 18 C 1.35933 * 125.93342 * 0.02562 * 17 16 15 19 19 C 1.40964 * 106.74515 * 179.97438 * 18 17 16 20 20 C 1.34705 * 107.03272 * 359.97438 * 19 18 17 21 21 C 1.50698 * 125.66963 * 180.02562 * 20 19 18 22 22 O 1.42906 * 109.46648 * 65.00063 * 21 20 19 23 23 Si 1.86298 * 109.47394 * 184.99975 * 21 20 19 24 24 O 1.34343 * 108.66655 * 359.73619 * 20 19 18 25 25 C 1.39179 * 119.99519 * 0.02562 * 16 15 14 26 26 C 1.53779 * 87.17750 * 334.61187 * 6 5 3 27 27 H 1.08998 * 109.46794 * 60.00211 * 1 2 3 28 28 H 1.08999 * 109.46642 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47287 * 300.00458 * 1 2 3 30 30 H 1.09000 * 113.60996 * 25.43620 * 5 3 2 31 31 H 1.09002 * 113.61854 * 254.52797 * 5 3 2 32 32 H 0.97004 * 119.99106 * 23.47820 * 8 6 5 33 33 H 0.96704 * 114.00008 * 89.99342 * 13 12 11 34 34 H 1.08007 * 119.87666 * 180.02562 * 14 12 11 35 35 H 1.08003 * 119.88257 * 180.02562 * 15 14 12 36 36 H 1.08001 * 126.62643 * 359.97438 * 18 17 16 37 37 H 1.08006 * 126.48362 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.46989 * 305.00620 * 21 20 19 39 39 H 0.96700 * 113.99877 * 60.00280 * 22 21 20 40 40 H 1.48490 * 110.00007 * 180.02562 * 23 21 20 41 41 H 1.48500 * 109.99802 * 301.32140 * 23 21 20 42 42 H 1.08006 * 120.12223 * 180.27701 * 25 16 15 43 43 H 1.08993 * 113.61704 * 139.93322 * 26 6 5 44 44 H 1.09000 * 113.61163 * 270.84529 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0789 0.3238 5 6 3.3755 1.3719 0.7046 6 6 3.8227 2.3181 -0.4222 7 1 3.6235 3.3695 -0.2143 8 7 5.1935 2.0787 -0.8802 9 6 5.8842 3.0657 -1.4844 10 8 5.3699 4.1550 -1.6490 11 6 7.2648 2.8243 -1.9463 12 6 7.9856 3.8491 -2.5757 13 8 7.4143 5.0655 -2.7602 14 6 9.2839 3.6189 -3.0096 15 6 9.8690 2.3854 -2.8249 16 6 9.1594 1.3560 -2.1984 17 6 9.7922 0.0344 -2.0035 18 6 11.0507 -0.3113 -2.3835 19 6 11.2348 -1.6561 -2.0031 20 6 10.0918 -2.0600 -1.4157 21 6 9.8319 -3.4324 -0.8501 22 8 10.7018 -3.6626 0.2601 23 14 8.0603 -3.5459 -0.2849 24 8 9.2244 -1.0341 -1.4120 25 6 7.8571 1.5756 -1.7593 26 6 2.7534 1.6511 -1.3033 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.9088 0.4213 0.7138 31 1 3.3384 1.8472 1.6848 32 1 5.6039 1.2096 -0.7486 33 1 7.5579 5.6824 -2.0294 34 1 9.8375 4.4099 -3.4939 35 1 10.8796 2.2129 -3.1645 36 1 11.7705 0.3221 -2.8807 37 1 12.1240 -2.2502 -2.1542 38 1 10.0170 -4.1831 -1.6184 39 1 10.5920 -3.0303 0.9835 40 1 7.7914 -4.8944 0.2756 41 1 7.7867 -2.5066 0.7400 42 1 7.3088 0.7833 -1.2712 43 1 2.2146 2.3513 -1.9416 44 1 3.1163 0.7770 -1.8439 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_13259648.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:47 Heat of formation + Delta-G solvation = -71.675897 kcal Electronic energy + Delta-G solvation = -29761.421241 eV Core-core repulsion = 25420.933332 eV Total energy + Delta-G solvation = -4340.487909 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.69451 -41.70914 -40.59652 -39.33374 -38.20972 -37.84415 -37.22123 -34.56198 -34.08280 -32.74321 -32.17082 -30.04743 -27.82986 -26.80292 -26.39393 -25.96863 -24.45433 -23.47423 -22.80636 -21.76173 -21.40652 -20.96090 -19.58146 -19.15818 -18.34685 -18.27780 -17.60460 -17.44875 -17.01672 -16.71674 -16.62993 -16.33689 -16.19632 -15.99072 -15.79442 -15.62008 -15.41651 -14.94723 -14.52833 -14.40785 -14.35606 -13.94548 -13.79209 -13.64112 -13.51319 -13.41191 -13.21424 -13.12035 -12.88545 -12.76616 -12.20581 -12.16059 -12.14174 -11.94459 -11.80234 -11.06207 -10.91663 -10.79009 -10.50089 -10.47931 -10.32161 -10.06548 -8.90614 -4.95705 -0.56317 -0.21623 0.77295 1.16039 1.46938 1.49051 1.71024 1.84907 1.91893 1.96683 2.61789 2.90980 3.10910 3.21914 3.30727 3.37555 3.50733 3.53529 3.65100 3.78635 3.85711 3.90328 4.02430 4.06462 4.20973 4.27953 4.36539 4.45855 4.50456 4.54424 4.64111 4.67263 4.69314 4.69650 4.79997 4.84598 4.88693 4.91622 4.93848 4.99943 5.03136 5.14434 5.20741 5.42546 5.45293 5.50996 5.98891 6.24038 6.34785 6.39249 6.72435 7.08305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.063 3.937 4 H 0.104 0.896 5 C -0.135 4.135 6 C 0.123 3.877 7 H 0.109 0.891 8 N -0.705 5.705 9 C 0.558 3.442 10 O -0.558 6.558 11 C -0.180 4.180 12 C 0.164 3.836 13 O -0.494 6.494 14 C -0.146 4.146 15 C -0.044 4.044 16 C -0.041 4.041 17 C 0.023 3.977 18 C -0.189 4.189 19 C -0.181 4.181 20 C -0.054 4.054 21 C -0.036 4.036 22 O -0.536 6.536 23 Si 0.765 3.235 24 O -0.174 6.174 25 C -0.052 4.052 26 C -0.168 4.168 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.411 0.589 33 H 0.410 0.590 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.175 0.825 37 H 0.162 0.838 38 H 0.153 0.847 39 H 0.390 0.610 40 H -0.285 1.285 41 H -0.285 1.285 42 H 0.147 0.853 43 H 0.070 0.930 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 -1.359 0.408 1.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.005 3.995 4 H 0.122 0.878 5 C -0.173 4.173 6 C 0.018 3.982 7 H 0.127 0.873 8 N -0.357 5.357 9 C 0.347 3.653 10 O -0.437 6.437 11 C -0.184 4.184 12 C 0.118 3.882 13 O -0.308 6.308 14 C -0.164 4.164 15 C -0.062 4.062 16 C -0.042 4.042 17 C -0.026 4.026 18 C -0.208 4.208 19 C -0.200 4.200 20 C -0.104 4.104 21 C -0.145 4.145 22 O -0.344 6.344 23 Si 0.668 3.332 24 O -0.072 6.072 25 C -0.070 4.070 26 C -0.207 4.207 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.249 0.751 33 H 0.271 0.729 34 H 0.182 0.818 35 H 0.183 0.817 36 H 0.192 0.808 37 H 0.180 0.820 38 H 0.170 0.830 39 H 0.240 0.760 40 H -0.212 1.212 41 H -0.211 1.211 42 H 0.165 0.835 43 H 0.089 0.911 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.299 -1.609 0.213 1.650 hybrid contribution 0.912 0.454 1.217 1.587 sum 1.211 -1.154 1.430 2.201 Atomic orbital electron populations 1.22960 0.79811 1.03732 1.00779 1.87903 1.21185 1.27683 1.94645 1.23571 0.94178 0.85667 0.96110 0.87773 1.23576 0.95166 1.00165 0.98387 1.22200 0.80112 1.00266 0.95581 0.87317 1.45796 1.14959 1.15250 1.59735 1.18292 0.85613 0.84122 0.77305 1.90800 1.70865 1.25321 1.56694 1.20257 0.95281 0.96316 1.06522 1.18885 0.90500 0.86017 0.92806 1.84709 1.76927 1.21783 1.47380 1.21579 0.93388 0.99142 1.02332 1.21426 1.00842 0.90219 0.93724 1.17703 0.93896 0.89632 1.02937 1.20435 0.93182 0.87046 1.01986 1.22157 0.96418 0.96810 1.05384 1.21801 0.99519 0.96210 1.02450 1.23038 0.90307 0.90818 1.06197 1.24503 1.07466 0.90245 0.92314 1.86643 1.61166 1.57540 1.29079 0.93673 0.75945 0.77258 0.86292 1.83913 1.41699 1.18919 1.62642 1.21399 0.94089 0.95289 0.96265 1.24024 0.97521 1.01128 0.97997 0.93468 0.88856 0.92925 0.88124 0.88902 0.75109 0.72879 0.81782 0.81654 0.80770 0.82002 0.82985 0.76045 1.21207 1.21126 0.83541 0.91102 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.40 -1.08 10.72 -148.98 -1.60 -2.67 16 3 C 0.06 -0.04 4.31 31.18 0.13 0.10 16 4 H 0.10 -0.33 7.87 -2.39 -0.02 -0.35 16 5 C -0.13 0.31 7.66 31.12 0.24 0.55 16 6 C 0.12 0.09 4.21 45.52 0.19 0.28 16 7 H 0.11 0.35 7.50 -2.39 -0.02 0.34 16 8 N -0.71 -0.77 5.31 -443.17 -2.35 -3.12 16 9 C 0.56 3.71 7.76 86.71 0.67 4.38 16 10 O -0.56 -7.66 14.76 17.00 0.25 -7.41 16 11 C -0.18 -0.62 5.88 -20.04 -0.12 -0.74 16 12 C 0.16 0.50 6.72 22.89 0.15 0.66 16 13 O -0.49 -2.56 11.55 -68.70 -0.79 -3.36 16 14 C -0.15 0.33 9.96 22.30 0.22 0.55 16 15 C -0.04 0.17 9.54 22.55 0.22 0.38 16 16 C -0.04 0.03 5.87 -20.13 -0.12 -0.09 16 17 C 0.02 0.01 7.03 24.27 0.17 0.18 16 18 C -0.19 0.28 10.26 22.40 0.23 0.51 16 19 C -0.18 0.08 10.78 22.13 0.24 0.31 16 20 C -0.05 0.01 6.20 24.87 0.15 0.17 16 21 C -0.04 0.09 2.98 71.24 0.21 0.30 16 22 O -0.54 -0.02 12.88 -148.98 -1.92 -1.94 16 23 Si 0.76 -1.90 32.11 68.60 2.20 0.30 16 24 O -0.17 -0.16 8.80 -6.65 -0.06 -0.22 16 25 C -0.05 0.01 9.20 22.79 0.21 0.22 16 26 C -0.17 -0.15 7.73 31.18 0.24 0.09 16 27 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 29 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.10 -0.29 8.11 -2.39 -0.02 -0.31 16 31 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.41 -1.45 6.74 -92.71 -0.62 -2.08 16 33 H 0.41 -0.85 9.06 -74.05 -0.67 -1.52 16 34 H 0.16 -1.06 8.06 -2.91 -0.02 -1.08 16 35 H 0.17 -1.55 6.96 -2.91 -0.02 -1.57 16 36 H 0.17 -1.15 7.25 -2.91 -0.02 -1.17 16 37 H 0.16 -0.42 8.06 -2.91 -0.02 -0.44 16 38 H 0.15 -0.88 7.96 -2.39 -0.02 -0.90 16 39 H 0.39 -1.98 8.70 -74.06 -0.64 -2.63 16 40 H -0.29 -1.04 7.11 99.48 0.71 -0.33 16 41 H -0.29 -0.71 7.11 99.48 0.71 0.00 16 42 H 0.15 -0.53 6.24 -2.91 -0.02 -0.54 16 43 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 Total: 0.00 -21.99 378.63 -0.81 -22.80 By element: Atomic # 1 Polarization: -12.60 SS G_CDS: -0.82 Total: -13.42 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 4.28 Total: 9.04 kcal Atomic # 7 Polarization: -0.77 SS G_CDS: -2.35 Total: -3.12 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -4.12 Total: -15.59 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: 2.20 Total: 0.30 kcal Total: -21.99 -0.81 -22.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_13259648.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.877 kcal (2) G-P(sol) polarization free energy of solvation -21.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds