Wall clock time and date at job start Mon Mar 8 2021 04:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00062 * 2 1 4 4 H 1.09000 * 112.91058 * 18.74736 * 3 2 1 5 5 C 1.53786 * 113.61586 * 149.99622 * 3 2 1 6 6 C 1.53781 * 87.17350 * 140.02292 * 5 3 2 7 7 H 1.08999 * 113.61567 * 89.07405 * 6 5 3 8 8 N 1.46500 * 113.61760 * 219.89426 * 6 5 3 9 9 C 1.34768 * 120.00289 * 205.00346 * 8 6 5 10 10 O 1.21578 * 120.00044 * 359.97438 * 9 8 6 11 11 C 1.47658 * 120.00247 * 180.02562 * 9 8 6 12 12 C 1.40172 * 119.96837 * 359.71675 * 11 9 8 13 13 C 1.36354 * 120.66336 * 179.75742 * 12 11 9 14 14 C 1.39324 * 120.24165 * 0.52367 * 13 12 11 15 15 N 1.37403 * 133.25868 * 179.76039 * 14 13 12 16 16 C 1.36858 * 109.98271 * 179.97438 * 15 14 13 17 17 C 1.34188 * 109.97092 * 359.97438 * 16 15 14 18 18 C 1.50701 * 126.54469 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.47188 * 105.02935 * 18 17 16 20 20 Si 1.86303 * 109.47080 * 345.02798 * 18 17 16 21 21 C 1.40909 * 119.64016 * 359.73637 * 14 13 12 22 22 C 1.39187 * 119.97815 * 179.97438 * 11 9 8 23 23 C 1.53781 * 87.08070 * 334.52830 * 6 5 3 24 24 H 1.09003 * 109.46699 * 60.00030 * 1 2 3 25 25 H 1.09002 * 109.47245 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47037 * 300.00188 * 1 2 3 27 27 H 1.09002 * 113.61357 * 25.43209 * 5 3 2 28 28 H 1.09002 * 113.61608 * 254.61371 * 5 3 2 29 29 H 0.97000 * 119.99380 * 24.99478 * 8 6 5 30 30 H 1.07998 * 119.66720 * 0.02562 * 12 11 9 31 31 H 1.08004 * 119.87747 * 180.28645 * 13 12 11 32 32 H 0.96999 * 125.00400 * 359.94683 * 15 14 13 33 33 H 1.08003 * 125.02010 * 179.97438 * 16 15 14 34 34 H 1.09003 * 109.46975 * 225.02851 * 18 17 16 35 35 H 0.96706 * 114.00118 * 180.02562 * 19 18 17 36 36 H 1.48511 * 109.99885 * 298.68195 * 20 18 17 37 37 H 1.48501 * 109.99737 * 59.99821 * 20 18 17 38 38 H 1.08002 * 120.29905 * 359.95479 * 22 11 9 39 39 H 1.09005 * 113.61471 * 139.98321 * 23 6 5 40 40 H 1.09003 * 113.61469 * 270.88099 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0797 0.3227 5 6 3.3756 1.3718 0.7046 6 6 3.8247 2.3191 -0.4205 7 1 3.6238 3.3701 -0.2126 8 7 5.1969 2.0813 -0.8752 9 6 5.8989 3.0783 -1.4492 10 8 5.3933 4.1749 -1.5902 11 6 7.2817 2.8384 -1.9080 12 6 7.8658 1.5752 -1.7408 13 6 9.1400 1.3367 -2.1636 14 6 9.8834 2.3532 -2.7596 15 7 11.1583 2.4131 -3.2683 16 6 11.4114 3.6691 -3.7494 17 6 10.3355 4.4520 -3.5754 18 6 10.2072 5.9011 -3.9684 19 8 9.3916 6.0073 -5.1370 20 14 11.8970 6.5999 -4.3248 21 6 9.3094 3.6290 -2.9286 22 6 8.0061 3.8683 -2.5013 23 6 2.7569 1.6507 -1.3025 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.9088 0.4212 0.7139 28 1 3.3381 1.8458 1.6855 29 1 5.6001 1.2063 -0.7629 30 1 7.2993 0.7817 -1.2762 31 1 9.5759 0.3573 -2.0326 32 1 11.7866 1.6742 -3.2837 33 1 12.3400 3.9839 -4.2022 34 1 9.7477 6.4595 -3.1527 35 1 9.2659 6.9144 -5.4479 36 1 12.7448 6.5244 -3.1078 37 1 12.5340 5.8471 -5.4351 38 1 7.5612 4.8441 -2.6290 39 1 2.2186 2.3501 -1.9422 40 1 3.1210 0.7763 -1.8419 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9984030_13287722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:52 Heat of formation + Delta-G solvation = -16.705305 kcal Electronic energy + Delta-G solvation = -23831.134671 eV Core-core repulsion = 20193.195079 eV Total energy + Delta-G solvation = -3637.939592 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.48859 -41.14510 -39.79179 -37.84870 -37.46388 -37.09110 -34.12811 -33.35963 -30.85550 -30.48425 -27.83716 -26.75418 -26.42549 -25.70420 -23.83106 -23.48523 -21.47681 -21.09893 -20.46829 -19.08908 -18.36120 -18.29847 -18.17446 -17.27538 -16.79911 -16.49174 -16.18942 -15.77972 -15.70718 -15.33544 -15.26668 -15.07048 -14.88028 -14.73067 -14.65432 -14.13268 -13.80321 -13.50708 -13.45842 -13.45483 -12.76854 -12.67999 -12.55717 -12.17032 -12.10125 -12.00517 -11.85644 -11.83470 -10.79107 -10.78746 -10.46346 -10.18767 -9.97675 -9.32733 -8.83878 -5.01914 -0.04905 0.18739 1.29155 1.42120 1.66024 1.93360 1.95879 1.99959 2.15430 2.91984 2.96434 3.43587 3.54171 3.55464 3.59659 3.67767 3.81193 3.84614 3.89644 3.95601 4.13199 4.25521 4.28966 4.38223 4.45204 4.46330 4.49292 4.58693 4.70057 4.72025 4.77321 4.78481 4.93165 4.98887 5.02294 5.09046 5.25929 5.37471 5.47970 5.58843 5.59414 5.97201 6.23446 6.34031 6.58685 6.74837 7.34036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.063 3.937 4 H 0.093 0.907 5 C -0.144 4.144 6 C 0.126 3.874 7 H 0.120 0.880 8 N -0.716 5.716 9 C 0.567 3.433 10 O -0.538 6.538 11 C -0.169 4.169 12 C -0.065 4.065 13 C -0.133 4.133 14 C 0.120 3.880 15 N -0.584 5.584 16 C 0.056 3.944 17 C -0.144 4.144 18 C -0.039 4.039 19 O -0.546 6.546 20 Si 0.688 3.312 21 C -0.102 4.102 22 C 0.011 3.989 23 C -0.169 4.169 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.401 0.599 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.422 0.578 33 H 0.170 0.830 34 H 0.072 0.928 35 H 0.380 0.620 36 H -0.256 1.256 37 H -0.253 1.253 38 H 0.139 0.861 39 H 0.076 0.924 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.010 -0.424 0.766 2.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.005 3.995 4 H 0.111 0.889 5 C -0.182 4.182 6 C 0.020 3.980 7 H 0.138 0.862 8 N -0.367 5.367 9 C 0.356 3.644 10 O -0.416 6.416 11 C -0.174 4.174 12 C -0.085 4.085 13 C -0.154 4.154 14 C 0.011 3.989 15 N -0.187 5.187 16 C -0.071 4.071 17 C -0.151 4.151 18 C -0.150 4.150 19 O -0.352 6.352 20 Si 0.588 3.412 21 C -0.107 4.107 22 C -0.009 4.009 23 C -0.208 4.208 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.237 0.763 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.259 0.741 33 H 0.187 0.813 34 H 0.090 0.910 35 H 0.228 0.772 36 H -0.180 1.180 37 H -0.178 1.178 38 H 0.157 0.843 39 H 0.095 0.905 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.715 -0.690 0.693 2.886 hybrid contribution 0.031 -1.094 0.250 1.123 sum 2.746 -1.785 0.943 3.408 Atomic orbital electron populations 1.22828 0.80775 1.03026 1.00151 1.87934 1.19989 1.26914 1.94558 1.23505 0.93724 0.85736 0.96555 0.88914 1.23626 0.95692 1.00401 0.98519 1.22188 0.80461 1.00527 0.94791 0.86213 1.45787 1.14579 1.14298 1.62083 1.18187 0.85298 0.84060 0.76872 1.90783 1.71039 1.23920 1.55828 1.19543 0.94738 0.95199 1.07884 1.20598 0.94292 0.95690 0.97944 1.19664 0.94606 0.97723 1.03384 1.18437 0.85522 0.95923 0.99028 1.41685 1.12671 1.11763 1.52543 1.21576 0.99992 0.84150 1.01360 1.19636 0.93538 0.94603 1.07317 1.24003 1.06356 0.94278 0.90356 1.86536 1.72280 1.32680 1.43694 0.94993 0.75142 0.89753 0.81279 1.18903 0.94597 0.92770 1.04395 1.20668 0.90668 0.98840 0.90715 1.24071 0.97476 1.01451 0.97766 0.93833 0.89499 0.93819 0.88538 0.89951 0.76299 0.85287 0.85344 0.74070 0.81333 0.90967 0.77249 1.18025 1.17790 0.84289 0.90523 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.85 101.05 1.10 1.08 16 2 O -0.38 -0.66 10.72 -35.23 -0.38 -1.04 16 3 C 0.06 0.01 4.32 -25.77 -0.11 -0.11 16 4 H 0.09 -0.11 7.87 -51.93 -0.41 -0.51 16 5 C -0.14 0.10 7.65 -25.92 -0.20 -0.10 16 6 C 0.13 0.08 4.24 -67.12 -0.28 -0.21 16 7 H 0.12 0.21 7.46 -51.93 -0.39 -0.18 16 8 N -0.72 -0.59 5.31 -54.02 -0.29 -0.88 16 9 C 0.57 2.20 7.76 -12.42 -0.10 2.10 16 10 O -0.54 -3.98 15.93 5.30 0.08 -3.90 16 11 C -0.17 -0.51 5.87 -104.97 -0.62 -1.13 16 12 C -0.07 -0.03 9.46 -39.53 -0.37 -0.41 16 13 C -0.13 -0.06 10.00 -39.86 -0.40 -0.46 16 14 C 0.12 0.26 7.27 -83.95 -0.61 -0.35 16 15 N -0.58 -0.16 6.05 -10.61 -0.06 -0.23 16 16 C 0.06 0.07 10.43 -16.73 -0.17 -0.10 16 17 C -0.14 -0.43 5.61 -102.69 -0.58 -1.01 16 18 C -0.04 -0.03 3.05 36.01 0.11 0.08 16 19 O -0.55 -0.76 12.86 -35.23 -0.45 -1.22 16 20 Si 0.69 -0.87 30.79 -169.99 -5.23 -6.11 16 21 C -0.10 -0.40 6.34 -105.16 -0.67 -1.06 16 22 C 0.01 0.04 9.64 -38.86 -0.37 -0.33 16 23 C -0.17 -0.09 7.73 -25.78 -0.20 -0.29 16 24 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 25 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 26 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 27 H 0.10 -0.09 8.12 -51.93 -0.42 -0.52 16 28 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 29 H 0.40 -0.68 6.73 -40.82 -0.27 -0.95 16 30 H 0.13 -0.33 6.36 -52.49 -0.33 -0.67 16 31 H 0.13 -0.27 8.06 -52.48 -0.42 -0.70 16 32 H 0.42 -1.27 8.96 -40.82 -0.37 -1.64 16 33 H 0.17 -0.11 6.30 -52.48 -0.33 -0.44 16 34 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 35 H 0.38 -1.42 8.74 45.56 0.40 -1.02 16 36 H -0.26 -0.30 7.11 56.52 0.40 0.10 16 37 H -0.25 -0.29 7.04 56.52 0.40 0.11 16 38 H 0.14 0.65 7.64 -52.49 -0.40 0.25 16 39 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 40 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 LS Contribution 339.11 15.07 5.11 5.11 Total: 0.00 -10.05 339.11 -9.80 -19.85 By element: Atomic # 1 Polarization: -4.20 SS G_CDS: -5.10 Total: -9.30 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -3.48 Total: -2.29 kcal Atomic # 7 Polarization: -0.75 SS G_CDS: -0.35 Total: -1.10 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.75 Total: -6.15 kcal Atomic # 14 Polarization: -0.87 SS G_CDS: -5.23 Total: -6.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -10.05 -9.80 -19.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_13287722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.143 kcal (2) G-P(sol) polarization free energy of solvation -10.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds