Wall clock time and date at job start Mon Mar 8 2021 04:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00062 * 2 1 4 4 H 1.09000 * 112.91058 * 18.74736 * 3 2 1 5 5 C 1.53786 * 113.61586 * 149.99622 * 3 2 1 6 6 C 1.53781 * 87.17350 * 140.02292 * 5 3 2 7 7 H 1.08999 * 113.61567 * 89.07405 * 6 5 3 8 8 N 1.46500 * 113.61760 * 219.89426 * 6 5 3 9 9 C 1.34768 * 120.00289 * 205.00346 * 8 6 5 10 10 O 1.21578 * 120.00044 * 359.97438 * 9 8 6 11 11 C 1.47658 * 120.00247 * 180.02562 * 9 8 6 12 12 C 1.40172 * 119.96837 * 359.71675 * 11 9 8 13 13 C 1.36354 * 120.66336 * 179.75742 * 12 11 9 14 14 C 1.39324 * 120.24165 * 0.52367 * 13 12 11 15 15 N 1.37403 * 133.25868 * 179.76039 * 14 13 12 16 16 C 1.36858 * 109.98271 * 179.97438 * 15 14 13 17 17 C 1.34188 * 109.97092 * 359.97438 * 16 15 14 18 18 C 1.50701 * 126.54469 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.47188 * 105.02935 * 18 17 16 20 20 Si 1.86303 * 109.47080 * 345.02798 * 18 17 16 21 21 C 1.40909 * 119.64016 * 359.73637 * 14 13 12 22 22 C 1.39187 * 119.97815 * 179.97438 * 11 9 8 23 23 C 1.53781 * 87.08070 * 334.52830 * 6 5 3 24 24 H 1.09003 * 109.46699 * 60.00030 * 1 2 3 25 25 H 1.09002 * 109.47245 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47037 * 300.00188 * 1 2 3 27 27 H 1.09002 * 113.61357 * 25.43209 * 5 3 2 28 28 H 1.09002 * 113.61608 * 254.61371 * 5 3 2 29 29 H 0.97000 * 119.99380 * 24.99478 * 8 6 5 30 30 H 1.07998 * 119.66720 * 0.02562 * 12 11 9 31 31 H 1.08004 * 119.87747 * 180.28645 * 13 12 11 32 32 H 0.96999 * 125.00400 * 359.94683 * 15 14 13 33 33 H 1.08003 * 125.02010 * 179.97438 * 16 15 14 34 34 H 1.09003 * 109.46975 * 225.02851 * 18 17 16 35 35 H 0.96706 * 114.00118 * 180.02562 * 19 18 17 36 36 H 1.48511 * 109.99885 * 298.68195 * 20 18 17 37 37 H 1.48501 * 109.99737 * 59.99821 * 20 18 17 38 38 H 1.08002 * 120.29905 * 359.95479 * 22 11 9 39 39 H 1.09005 * 113.61471 * 139.98321 * 23 6 5 40 40 H 1.09003 * 113.61469 * 270.88099 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0797 0.3227 5 6 3.3756 1.3718 0.7046 6 6 3.8247 2.3191 -0.4205 7 1 3.6238 3.3701 -0.2126 8 7 5.1969 2.0813 -0.8752 9 6 5.8989 3.0783 -1.4492 10 8 5.3933 4.1749 -1.5902 11 6 7.2817 2.8384 -1.9080 12 6 7.8658 1.5752 -1.7408 13 6 9.1400 1.3367 -2.1636 14 6 9.8834 2.3532 -2.7596 15 7 11.1583 2.4131 -3.2683 16 6 11.4114 3.6691 -3.7494 17 6 10.3355 4.4520 -3.5754 18 6 10.2072 5.9011 -3.9684 19 8 9.3916 6.0073 -5.1370 20 14 11.8970 6.5999 -4.3248 21 6 9.3094 3.6290 -2.9286 22 6 8.0061 3.8683 -2.5013 23 6 2.7569 1.6507 -1.3025 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.9088 0.4212 0.7139 28 1 3.3381 1.8458 1.6855 29 1 5.6001 1.2063 -0.7629 30 1 7.2993 0.7817 -1.2762 31 1 9.5759 0.3573 -2.0326 32 1 11.7866 1.6742 -3.2837 33 1 12.3400 3.9839 -4.2022 34 1 9.7477 6.4595 -3.1527 35 1 9.2659 6.9144 -5.4479 36 1 12.7448 6.5244 -3.1078 37 1 12.5340 5.8471 -5.4351 38 1 7.5612 4.8441 -2.6290 39 1 2.2186 2.3501 -1.9422 40 1 3.1210 0.7763 -1.8419 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_13287722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:09:51 Heat of formation + Delta-G solvation = -19.345811 kcal Electronic energy + Delta-G solvation = -23831.249172 eV Core-core repulsion = 20193.195079 eV Total energy + Delta-G solvation = -3638.054093 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.57922 -41.29903 -39.92809 -37.93702 -37.52519 -37.22222 -34.31025 -33.45987 -30.97292 -30.58597 -27.80944 -26.76978 -26.48517 -25.82006 -23.92477 -23.58008 -21.66758 -21.15409 -20.56437 -19.17198 -18.48443 -18.35093 -18.25967 -17.33451 -16.90486 -16.58514 -16.28525 -15.89432 -15.78832 -15.45934 -15.35521 -15.12483 -14.92919 -14.86703 -14.76530 -14.19886 -13.86749 -13.58609 -13.53287 -13.46725 -12.77918 -12.74875 -12.65735 -12.21758 -12.14094 -12.07317 -11.92457 -11.86064 -11.09700 -10.91267 -10.48331 -10.20539 -10.16174 -9.45119 -8.94001 -4.92861 -0.24264 0.09038 1.32688 1.33887 1.70859 1.76948 1.93038 1.96854 2.02462 2.79670 2.92676 3.40468 3.48720 3.53481 3.58931 3.65257 3.71846 3.80257 3.88007 3.98154 4.07297 4.18419 4.29208 4.32182 4.43584 4.48018 4.52682 4.54777 4.70462 4.71697 4.72617 4.85142 4.91983 4.93883 4.95063 5.01904 5.17476 5.25228 5.35456 5.45562 5.47410 5.86224 6.24776 6.41215 6.46562 6.94844 7.12794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.062 3.938 4 H 0.104 0.896 5 C -0.132 4.132 6 C 0.121 3.879 7 H 0.105 0.895 8 N -0.700 5.700 9 C 0.564 3.436 10 O -0.584 6.584 11 C -0.178 4.178 12 C -0.062 4.062 13 C -0.126 4.126 14 C 0.110 3.890 15 N -0.573 5.573 16 C 0.057 3.943 17 C -0.179 4.179 18 C -0.060 4.060 19 O -0.570 6.570 20 Si 0.791 3.209 21 C -0.131 4.131 22 C -0.014 4.014 23 C -0.168 4.168 24 H 0.046 0.954 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.415 0.585 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.438 0.562 33 H 0.188 0.812 34 H 0.071 0.929 35 H 0.399 0.601 36 H -0.287 1.287 37 H -0.281 1.281 38 H 0.117 0.883 39 H 0.069 0.931 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.787 -1.987 1.207 3.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.004 3.996 4 H 0.122 0.878 5 C -0.170 4.170 6 C 0.016 3.984 7 H 0.123 0.877 8 N -0.351 5.351 9 C 0.353 3.647 10 O -0.465 6.465 11 C -0.182 4.182 12 C -0.082 4.082 13 C -0.147 4.147 14 C 0.001 3.999 15 N -0.177 5.177 16 C -0.070 4.070 17 C -0.186 4.186 18 C -0.168 4.168 19 O -0.379 6.379 20 Si 0.694 3.306 21 C -0.135 4.135 22 C -0.033 4.033 23 C -0.207 4.207 24 H 0.065 0.935 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.254 0.746 30 H 0.181 0.819 31 H 0.180 0.820 32 H 0.279 0.721 33 H 0.205 0.795 34 H 0.089 0.911 35 H 0.249 0.751 36 H -0.213 1.213 37 H -0.208 1.208 38 H 0.135 0.865 39 H 0.087 0.913 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.468 -2.294 1.144 4.313 hybrid contribution -0.250 -0.649 0.108 0.704 sum 3.218 -2.943 1.252 4.537 Atomic orbital electron populations 1.22963 0.79832 1.03727 1.00781 1.87897 1.21173 1.27682 1.94644 1.23584 0.94260 0.85624 0.96133 0.87836 1.23565 0.94958 1.00211 0.98275 1.22194 0.80240 1.00224 0.95786 0.87660 1.45679 1.14469 1.14271 1.60712 1.18421 0.85750 0.83879 0.76628 1.90752 1.72041 1.25830 1.57911 1.19608 0.94298 0.96202 1.08139 1.20928 0.94632 0.95202 0.97447 1.20068 0.94233 0.98588 1.01778 1.18714 0.86213 0.95751 0.99231 1.41686 1.12381 1.11990 1.51622 1.21881 1.00139 0.84334 1.00628 1.20109 0.94106 0.96025 1.08401 1.24429 1.08402 0.93736 0.90277 1.86478 1.72771 1.34723 1.43933 0.93755 0.71118 0.87993 0.77772 1.19186 0.94793 0.94310 1.05243 1.20610 0.91516 0.98609 0.92589 1.24048 0.97521 1.01097 0.98032 0.93531 0.88839 0.92879 0.87750 0.88951 0.74615 0.81913 0.81978 0.72132 0.79524 0.91136 0.75064 1.21346 1.20772 0.86478 0.91261 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.40 -1.21 10.72 -148.98 -1.60 -2.81 16 3 C 0.06 0.00 4.32 31.21 0.13 0.13 16 4 H 0.10 -0.26 7.87 -2.39 -0.02 -0.28 16 5 C -0.13 0.27 7.65 31.12 0.24 0.51 16 6 C 0.12 0.22 4.24 45.52 0.19 0.41 16 7 H 0.11 0.54 7.46 -2.39 -0.02 0.52 16 8 N -0.70 -1.40 5.31 -443.09 -2.35 -3.75 16 9 C 0.56 5.37 7.76 86.73 0.67 6.04 16 10 O -0.58 -10.47 15.93 -3.96 -0.06 -10.54 16 11 C -0.18 -1.33 5.87 -20.09 -0.12 -1.45 16 12 C -0.06 -0.01 9.46 22.30 0.21 0.20 16 13 C -0.13 0.05 10.00 22.09 0.22 0.27 16 14 C 0.11 0.48 7.27 39.19 0.28 0.76 16 15 N -0.57 -0.06 6.05 -187.49 -1.13 -1.19 16 16 C 0.06 0.17 10.43 82.98 0.87 1.04 16 17 C -0.18 -1.35 5.61 -18.61 -0.10 -1.46 16 18 C -0.06 -0.20 3.05 71.24 0.22 0.02 16 19 O -0.57 -2.60 12.86 -148.98 -1.92 -4.51 16 20 Si 0.79 -1.84 30.79 68.60 2.11 0.27 16 21 C -0.13 -1.27 6.34 -20.21 -0.13 -1.39 16 22 C -0.01 -0.15 9.64 22.74 0.22 0.07 16 23 C -0.17 -0.28 7.73 31.21 0.24 -0.04 16 24 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H 0.10 -0.35 8.12 -2.39 -0.02 -0.37 16 28 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.42 -1.79 6.73 -92.71 -0.62 -2.42 16 30 H 0.16 -1.22 6.36 -2.91 -0.02 -1.24 16 31 H 0.16 -1.20 8.06 -2.91 -0.02 -1.22 16 32 H 0.44 -3.20 8.96 -92.71 -0.83 -4.03 16 33 H 0.19 -0.31 6.30 -2.91 -0.02 -0.33 16 34 H 0.07 0.17 7.96 -2.39 -0.02 0.15 16 35 H 0.40 -2.46 8.74 -74.05 -0.65 -3.11 16 36 H -0.29 -0.76 7.11 99.48 0.71 -0.05 16 37 H -0.28 -0.61 7.04 99.48 0.70 0.09 16 38 H 0.12 1.67 7.64 -2.91 -0.02 1.65 16 39 H 0.07 0.21 8.14 -2.38 -0.02 0.19 16 40 H 0.09 0.19 8.14 -2.39 -0.02 0.18 16 Total: 0.00 -25.95 339.11 -1.54 -27.49 By element: Atomic # 1 Polarization: -10.29 SS G_CDS: -0.97 Total: -11.26 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 4.38 Total: 6.30 kcal Atomic # 7 Polarization: -1.46 SS G_CDS: -3.49 Total: -4.94 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -3.58 Total: -17.86 kcal Atomic # 14 Polarization: -1.84 SS G_CDS: 2.11 Total: 0.27 kcal Total: -25.95 -1.54 -27.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_13287722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.142 kcal (2) G-P(sol) polarization free energy of solvation -25.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds