Wall clock time and date at job start Mon Mar 8 2021 04:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00393 * 2 1 4 4 H 1.09002 * 112.90574 * 341.24841 * 3 2 1 5 5 C 1.53779 * 113.61588 * 112.50113 * 3 2 1 6 6 C 1.53779 * 87.08402 * 139.98302 * 5 3 2 7 7 H 1.09000 * 113.61527 * 89.11480 * 6 5 3 8 8 N 1.46501 * 113.61719 * 220.02087 * 6 5 3 9 9 C 1.34772 * 120.00042 * 252.49461 * 8 6 5 10 10 O 1.21589 * 120.00133 * 0.02562 * 9 8 6 11 11 C 1.47601 * 120.00067 * 179.97438 * 9 8 6 12 12 C 1.39714 * 120.08767 * 359.73300 * 11 9 8 13 13 C 1.37724 * 119.91162 * 179.71786 * 12 11 9 14 14 C 1.50698 * 119.95665 * 180.25167 * 13 12 11 15 15 C 1.38978 * 120.08831 * 0.57019 * 13 12 11 16 16 O 1.35707 * 119.91476 * 179.69815 * 15 13 12 17 17 C 1.39021 * 120.17291 * 359.68315 * 15 13 12 18 18 C 1.50697 * 119.95306 * 180.02562 * 17 15 13 19 19 O 1.42903 * 109.47212 * 75.02182 * 18 17 15 20 20 Si 1.86304 * 109.46998 * 195.02062 * 18 17 15 21 21 C 1.37675 * 120.09056 * 0.03922 * 17 15 13 22 22 C 1.53784 * 113.61434 * 209.99830 * 3 2 1 23 23 H 1.09007 * 109.46503 * 60.00032 * 1 2 3 24 24 H 1.08995 * 109.47463 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46959 * 300.00297 * 1 2 3 26 26 H 1.09006 * 113.61307 * 25.43504 * 5 3 2 27 27 H 1.09007 * 113.61642 * 254.53261 * 5 3 2 28 28 H 0.97005 * 120.00129 * 72.49260 * 8 6 5 29 29 H 1.08003 * 120.04218 * 359.97438 * 12 11 9 30 30 H 1.09007 * 109.47210 * 270.31666 * 14 13 12 31 31 H 1.08995 * 109.47485 * 30.32480 * 14 13 12 32 32 H 1.09007 * 109.47342 * 150.32268 * 14 13 12 33 33 H 0.96701 * 114.00352 * 269.97943 * 16 15 13 34 34 H 1.09001 * 109.47457 * 315.01920 * 18 17 15 35 35 H 0.96695 * 114.00334 * 59.99968 * 19 18 17 36 36 H 1.48504 * 109.99840 * 180.02562 * 20 18 17 37 37 H 1.48501 * 109.99759 * 301.32015 * 20 18 17 38 38 H 1.07995 * 120.04752 * 180.02562 * 21 17 15 39 39 H 1.09004 * 113.61451 * 105.47160 * 22 3 2 40 40 H 1.08994 * 113.61477 * 334.56462 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3144 2.0797 -0.3228 5 6 2.7535 1.6488 1.3017 6 6 3.8228 2.3180 0.4223 7 1 3.6224 3.3692 0.2149 8 7 5.1936 2.0784 0.8804 9 6 5.8952 3.0743 1.4568 10 8 5.3904 4.1715 1.5970 11 6 7.2761 2.8328 1.9188 12 6 7.8556 1.5709 1.7646 13 6 9.1464 1.3511 2.1918 14 6 9.7745 -0.0080 2.0208 15 6 9.8681 2.3793 2.7864 16 8 11.1376 2.1571 3.2115 17 6 9.2932 3.6348 2.9464 18 6 10.0805 4.7463 3.5912 19 8 11.0534 5.2388 2.6676 20 14 8.9259 6.1271 4.0722 21 6 8.0054 3.8642 2.5169 22 6 3.3757 1.3717 -0.7045 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 3.1167 0.7738 1.8410 27 1 2.2141 2.3476 1.9412 28 1 5.5962 1.2029 0.7689 29 1 7.2936 0.7700 1.3073 30 1 9.5679 -0.6171 2.9009 31 1 9.3579 -0.4923 1.1377 32 1 10.8522 0.1023 1.9003 33 1 11.1980 1.8510 4.1268 34 1 10.5833 4.3667 4.4807 35 1 10.6763 5.5931 1.8507 36 1 9.6903 7.2297 4.7087 37 1 8.2105 6.6319 2.8728 38 1 7.5596 4.8399 2.6412 39 1 3.3386 1.8469 -1.6848 40 1 3.9089 0.4211 -0.7137 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9984030_13287732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:01 Heat of formation + Delta-G solvation = -96.532007 kcal Electronic energy + Delta-G solvation = -23541.387007 eV Core-core repulsion = 19903.181869 eV Total energy + Delta-G solvation = -3638.205138 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.79022 -40.94303 -39.72662 -37.92192 -37.58655 -37.21207 -34.43134 -33.97002 -31.68009 -28.11510 -27.92266 -26.94778 -26.84067 -25.74928 -23.88072 -22.13104 -21.54350 -21.00888 -19.64515 -18.71875 -18.34860 -18.02088 -17.10647 -16.83432 -16.68166 -16.34846 -16.23203 -15.87901 -15.78831 -15.64791 -15.17012 -14.90533 -14.62542 -14.50988 -14.09131 -13.89108 -13.58887 -13.55371 -13.30618 -13.05081 -12.85029 -12.80803 -12.41075 -12.24497 -12.19933 -11.92802 -11.74110 -11.65325 -10.95760 -10.55569 -10.53766 -10.15304 -10.01779 -9.67786 -4.94927 -0.40099 0.04170 1.25275 1.62322 1.64191 1.97090 1.97707 2.56020 2.83917 3.02885 3.29640 3.34709 3.46163 3.49820 3.55517 3.67747 3.74261 3.79140 3.93235 4.15097 4.20128 4.27747 4.39419 4.41131 4.44272 4.51890 4.59194 4.62331 4.63360 4.64036 4.72001 4.84307 4.89600 4.95863 4.97931 5.07483 5.08016 5.25048 5.40419 5.51964 6.16806 6.39629 6.41492 6.54502 7.12995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.064 3.936 4 H 0.093 0.907 5 C -0.168 4.168 6 C 0.124 3.876 7 H 0.121 0.879 8 N -0.713 5.713 9 C 0.563 3.437 10 O -0.533 6.533 11 C -0.139 4.139 12 C -0.065 4.065 13 C -0.117 4.117 14 C -0.115 4.115 15 C 0.161 3.839 16 O -0.484 6.484 17 C -0.149 4.149 18 C -0.061 4.061 19 O -0.521 6.521 20 Si 0.680 3.320 21 C -0.053 4.053 22 C -0.144 4.144 23 H 0.043 0.957 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.402 0.598 29 H 0.132 0.868 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.394 0.606 34 H 0.117 0.883 35 H 0.375 0.625 36 H -0.253 1.253 37 H -0.255 1.255 38 H 0.145 0.855 39 H 0.083 0.917 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.552 -4.586 1.091 5.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.005 3.995 4 H 0.111 0.889 5 C -0.207 4.207 6 C 0.019 3.981 7 H 0.139 0.861 8 N -0.365 5.365 9 C 0.350 3.650 10 O -0.410 6.410 11 C -0.142 4.142 12 C -0.084 4.084 13 C -0.118 4.118 14 C -0.171 4.171 15 C 0.116 3.884 16 O -0.295 6.295 17 C -0.150 4.150 18 C -0.171 4.171 19 O -0.327 6.327 20 Si 0.581 3.419 21 C -0.072 4.072 22 C -0.183 4.183 23 H 0.062 0.938 24 H 0.105 0.895 25 H 0.062 0.938 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.238 0.762 29 H 0.150 0.850 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.252 0.748 34 H 0.135 0.865 35 H 0.222 0.778 36 H -0.178 1.178 37 H -0.180 1.180 38 H 0.163 0.837 39 H 0.101 0.899 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.457 -3.133 0.990 4.103 hybrid contribution 0.279 -0.386 -0.725 0.867 sum -2.178 -3.519 0.265 4.147 Atomic orbital electron populations 1.22833 0.80707 1.03079 1.00172 1.87937 1.20044 1.26835 1.94561 1.23450 0.93733 0.85838 0.96464 0.88888 1.24023 0.97399 1.01463 0.97817 1.22243 0.80245 1.00662 0.94948 0.86115 1.45809 1.14849 1.14225 1.61595 1.18183 0.85221 0.84265 0.77289 1.90809 1.70838 1.23710 1.55626 1.19802 0.94667 0.94881 1.04870 1.21113 0.94216 0.95694 0.97381 1.20214 0.93939 0.96667 1.00964 1.20742 1.01842 0.91968 1.02596 1.18310 0.83647 0.91007 0.95467 1.84781 1.22084 1.88696 1.33902 1.20593 0.94678 0.96388 1.03327 1.24831 0.97330 0.99995 0.94983 1.86651 1.33463 1.80981 1.31576 0.94997 0.81249 0.79089 0.86542 1.21149 0.92483 0.99452 0.94073 1.23636 0.95743 1.00372 0.98512 0.93799 0.89454 0.93811 0.88667 0.90433 0.76208 0.85020 0.90764 0.91058 0.90391 0.74795 0.86540 0.77768 1.17797 1.17994 0.83739 0.89877 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 101.05 1.10 1.06 16 2 O -0.38 -0.36 10.71 -35.23 -0.38 -0.74 16 3 C 0.06 -0.05 4.31 -25.92 -0.11 -0.16 16 4 H 0.09 -0.18 7.87 -51.93 -0.41 -0.59 16 5 C -0.17 0.11 7.71 -25.92 -0.20 -0.09 16 6 C 0.12 -0.07 4.24 -67.12 -0.28 -0.36 16 7 H 0.12 0.07 7.47 -51.93 -0.39 -0.32 16 8 N -0.71 0.43 5.30 -54.03 -0.29 0.14 16 9 C 0.56 1.20 7.76 -12.44 -0.10 1.11 16 10 O -0.53 -3.03 15.94 5.29 0.08 -2.95 16 11 C -0.14 -0.13 5.88 -104.96 -0.62 -0.74 16 12 C -0.07 0.07 9.18 -39.22 -0.36 -0.29 16 13 C -0.12 0.07 5.89 -104.54 -0.62 -0.55 16 14 C -0.11 0.26 9.78 36.00 0.35 0.61 16 15 C 0.16 0.06 6.66 -39.02 -0.26 -0.20 16 16 O -0.48 0.06 11.84 -18.82 -0.22 -0.16 16 17 C -0.15 -0.09 5.27 -104.54 -0.55 -0.64 16 18 C -0.06 -0.02 2.37 36.00 0.09 0.06 16 19 O -0.52 -1.21 12.88 -35.23 -0.45 -1.67 16 20 Si 0.68 0.10 30.24 -169.99 -5.14 -5.04 16 21 C -0.05 -0.07 8.20 -39.22 -0.32 -0.39 16 22 C -0.14 0.23 7.66 -25.91 -0.20 0.03 16 23 H 0.04 -0.09 8.14 -51.92 -0.42 -0.51 16 24 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 25 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 26 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 27 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 28 H 0.40 -1.23 6.75 -40.82 -0.28 -1.51 16 29 H 0.13 -0.49 6.39 -52.48 -0.34 -0.83 16 30 H 0.07 -0.24 8.14 -51.93 -0.42 -0.67 16 31 H 0.07 -0.21 8.08 -51.93 -0.42 -0.63 16 32 H 0.08 -0.10 7.52 -51.93 -0.39 -0.49 16 33 H 0.39 -1.84 9.06 45.56 0.41 -1.43 16 34 H 0.12 -0.11 7.82 -51.93 -0.41 -0.52 16 35 H 0.37 -0.09 8.70 45.56 0.40 0.31 16 36 H -0.25 -0.77 7.11 56.52 0.40 -0.36 16 37 H -0.26 -0.68 6.68 56.52 0.38 -0.30 16 38 H 0.15 0.26 4.43 -52.49 -0.23 0.03 16 39 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 40 H 0.10 -0.18 8.12 -51.93 -0.42 -0.61 16 LS Contribution 335.68 15.07 5.06 5.06 Total: 0.00 -8.87 335.68 -8.07 -16.94 By element: Atomic # 1 Polarization: -6.39 SS G_CDS: -4.65 Total: -11.04 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.08 Total: -0.55 kcal Atomic # 7 Polarization: 0.43 SS G_CDS: -0.29 Total: 0.14 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.97 Total: -5.51 kcal Atomic # 14 Polarization: 0.10 SS G_CDS: -5.14 Total: -5.04 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -8.87 -8.07 -16.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_13287732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.596 kcal (2) G-P(sol) polarization free energy of solvation -8.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds