Wall clock time and date at job start Mon Mar 8 2021 04:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00393 * 2 1 4 4 H 1.09002 * 112.90574 * 341.24841 * 3 2 1 5 5 C 1.53779 * 113.61588 * 112.50113 * 3 2 1 6 6 C 1.53779 * 87.08402 * 139.98302 * 5 3 2 7 7 H 1.09000 * 113.61527 * 89.11480 * 6 5 3 8 8 N 1.46501 * 113.61719 * 220.02087 * 6 5 3 9 9 C 1.34772 * 120.00042 * 252.49461 * 8 6 5 10 10 O 1.21589 * 120.00133 * 0.02562 * 9 8 6 11 11 C 1.47601 * 120.00067 * 179.97438 * 9 8 6 12 12 C 1.39714 * 120.08767 * 359.73300 * 11 9 8 13 13 C 1.37724 * 119.91162 * 179.71786 * 12 11 9 14 14 C 1.50698 * 119.95665 * 180.25167 * 13 12 11 15 15 C 1.38978 * 120.08831 * 0.57019 * 13 12 11 16 16 O 1.35707 * 119.91476 * 179.69815 * 15 13 12 17 17 C 1.39021 * 120.17291 * 359.68315 * 15 13 12 18 18 C 1.50697 * 119.95306 * 180.02562 * 17 15 13 19 19 O 1.42903 * 109.47212 * 75.02182 * 18 17 15 20 20 Si 1.86304 * 109.46998 * 195.02062 * 18 17 15 21 21 C 1.37675 * 120.09056 * 0.03922 * 17 15 13 22 22 C 1.53784 * 113.61434 * 209.99830 * 3 2 1 23 23 H 1.09007 * 109.46503 * 60.00032 * 1 2 3 24 24 H 1.08995 * 109.47463 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46959 * 300.00297 * 1 2 3 26 26 H 1.09006 * 113.61307 * 25.43504 * 5 3 2 27 27 H 1.09007 * 113.61642 * 254.53261 * 5 3 2 28 28 H 0.97005 * 120.00129 * 72.49260 * 8 6 5 29 29 H 1.08003 * 120.04218 * 359.97438 * 12 11 9 30 30 H 1.09007 * 109.47210 * 270.31666 * 14 13 12 31 31 H 1.08995 * 109.47485 * 30.32480 * 14 13 12 32 32 H 1.09007 * 109.47342 * 150.32268 * 14 13 12 33 33 H 0.96701 * 114.00352 * 269.97943 * 16 15 13 34 34 H 1.09001 * 109.47457 * 315.01920 * 18 17 15 35 35 H 0.96695 * 114.00334 * 59.99968 * 19 18 17 36 36 H 1.48504 * 109.99840 * 180.02562 * 20 18 17 37 37 H 1.48501 * 109.99759 * 301.32015 * 20 18 17 38 38 H 1.07995 * 120.04752 * 180.02562 * 21 17 15 39 39 H 1.09004 * 113.61451 * 105.47160 * 22 3 2 40 40 H 1.08994 * 113.61477 * 334.56462 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3144 2.0797 -0.3228 5 6 2.7535 1.6488 1.3017 6 6 3.8228 2.3180 0.4223 7 1 3.6224 3.3692 0.2149 8 7 5.1936 2.0784 0.8804 9 6 5.8952 3.0743 1.4568 10 8 5.3904 4.1715 1.5970 11 6 7.2761 2.8328 1.9188 12 6 7.8556 1.5709 1.7646 13 6 9.1464 1.3511 2.1918 14 6 9.7745 -0.0080 2.0208 15 6 9.8681 2.3793 2.7864 16 8 11.1376 2.1571 3.2115 17 6 9.2932 3.6348 2.9464 18 6 10.0805 4.7463 3.5912 19 8 11.0534 5.2388 2.6676 20 14 8.9259 6.1271 4.0722 21 6 8.0054 3.8642 2.5169 22 6 3.3757 1.3717 -0.7045 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 3.1167 0.7738 1.8410 27 1 2.2141 2.3476 1.9412 28 1 5.5962 1.2029 0.7689 29 1 7.2936 0.7700 1.3073 30 1 9.5679 -0.6171 2.9009 31 1 9.3579 -0.4923 1.1377 32 1 10.8522 0.1023 1.9003 33 1 11.1980 1.8510 4.1268 34 1 10.5833 4.3667 4.4807 35 1 10.6763 5.5931 1.8507 36 1 9.6903 7.2297 4.7087 37 1 8.2105 6.6319 2.8728 38 1 7.5596 4.8399 2.6412 39 1 3.3386 1.8469 -1.6848 40 1 3.9089 0.4211 -0.7137 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_13287732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:00 Heat of formation + Delta-G solvation = -99.694973 kcal Electronic energy + Delta-G solvation = -23541.524163 eV Core-core repulsion = 19903.181869 eV Total energy + Delta-G solvation = -3638.342294 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.81352 -40.92332 -39.77398 -37.98633 -37.56959 -37.23555 -34.47664 -33.94779 -31.67212 -28.00055 -27.83196 -26.96181 -26.76421 -25.74356 -23.87116 -22.09610 -21.60547 -20.96253 -19.61160 -18.75697 -18.35301 -18.05108 -17.08390 -16.81739 -16.63823 -16.39896 -16.24338 -15.92903 -15.82679 -15.71880 -15.19710 -14.87889 -14.62088 -14.39561 -14.08176 -13.88521 -13.53016 -13.46861 -13.28806 -12.92052 -12.81223 -12.73503 -12.47673 -12.20018 -12.14569 -11.93418 -11.85019 -11.63495 -11.11028 -10.62959 -10.47960 -10.21415 -9.98335 -9.64941 -5.02182 -0.40531 0.06389 1.19948 1.51923 1.58120 1.85215 1.96771 2.54253 2.92373 3.11866 3.30170 3.41017 3.51728 3.53147 3.58730 3.71575 3.80181 3.88196 4.01748 4.16187 4.28833 4.37478 4.47323 4.52707 4.55405 4.62404 4.71718 4.72163 4.73532 4.82601 4.86011 4.93371 4.95577 4.99782 5.04643 5.09857 5.21105 5.32643 5.42737 5.60534 6.25249 6.39484 6.40920 6.76718 7.06831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.061 3.939 4 H 0.102 0.898 5 C -0.165 4.165 6 C 0.121 3.879 7 H 0.106 0.894 8 N -0.699 5.699 9 C 0.560 3.440 10 O -0.578 6.578 11 C -0.152 4.152 12 C -0.054 4.054 13 C -0.120 4.120 14 C -0.112 4.112 15 C 0.160 3.840 16 O -0.496 6.496 17 C -0.153 4.153 18 C -0.061 4.061 19 O -0.540 6.540 20 Si 0.749 3.251 21 C -0.065 4.065 22 C -0.134 4.134 23 H 0.051 0.949 24 H 0.093 0.907 25 H 0.047 0.953 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.415 0.585 29 H 0.161 0.839 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.413 0.587 34 H 0.133 0.867 35 H 0.383 0.617 36 H -0.292 1.292 37 H -0.295 1.295 38 H 0.132 0.868 39 H 0.090 0.910 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.368 -6.561 0.874 7.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.002 3.998 4 H 0.120 0.880 5 C -0.204 4.204 6 C 0.015 3.985 7 H 0.124 0.876 8 N -0.350 5.350 9 C 0.349 3.651 10 O -0.459 6.459 11 C -0.155 4.155 12 C -0.073 4.073 13 C -0.121 4.121 14 C -0.169 4.169 15 C 0.114 3.886 16 O -0.310 6.310 17 C -0.154 4.154 18 C -0.171 4.171 19 O -0.348 6.348 20 Si 0.656 3.344 21 C -0.083 4.083 22 C -0.172 4.172 23 H 0.070 0.930 24 H 0.111 0.889 25 H 0.066 0.934 26 H 0.113 0.887 27 H 0.090 0.910 28 H 0.254 0.746 29 H 0.179 0.821 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.274 0.726 34 H 0.151 0.849 35 H 0.231 0.769 36 H -0.219 1.219 37 H -0.223 1.223 38 H 0.149 0.851 39 H 0.109 0.891 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.276 -5.168 0.781 5.700 hybrid contribution 0.219 0.227 -0.668 0.738 sum -2.057 -4.941 0.113 5.353 Atomic orbital electron populations 1.22956 0.79860 1.03708 1.00762 1.87899 1.21130 1.27692 1.94668 1.23549 0.94235 0.85625 0.96352 0.87983 1.23986 0.97327 1.01186 0.97918 1.22216 0.80219 1.00254 0.95767 0.87557 1.45718 1.14664 1.14304 1.60341 1.18424 0.85708 0.83998 0.76963 1.90784 1.71851 1.25538 1.57700 1.19784 0.94171 0.95791 1.05738 1.21361 0.94200 0.95403 0.96298 1.20445 0.93982 0.97266 1.00372 1.20771 1.01157 0.91111 1.03822 1.18433 0.83800 0.91025 0.95338 1.84731 1.21798 1.88842 1.35589 1.20509 0.94362 0.96704 1.03799 1.24900 0.97087 0.99907 0.95220 1.86613 1.34616 1.81202 1.32332 0.94189 0.79080 0.77311 0.83819 1.21111 0.93038 0.99242 0.94958 1.23584 0.95078 1.00261 0.98285 0.93012 0.88880 0.93437 0.88711 0.91018 0.74585 0.82141 0.89357 0.89846 0.91240 0.72585 0.84906 0.76869 1.21911 1.22278 0.85071 0.89143 0.87730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.40 -0.58 10.71 -148.98 -1.60 -2.17 16 3 C 0.06 -0.12 4.31 31.12 0.13 0.02 16 4 H 0.10 -0.41 7.87 -2.39 -0.02 -0.43 16 5 C -0.17 0.19 7.71 31.12 0.24 0.43 16 6 C 0.12 -0.11 4.24 45.52 0.19 0.09 16 7 H 0.11 0.26 7.47 -2.39 -0.02 0.25 16 8 N -0.70 0.93 5.30 -443.13 -2.35 -1.42 16 9 C 0.56 2.89 7.76 86.72 0.67 3.56 16 10 O -0.58 -7.82 15.94 -4.00 -0.06 -7.88 16 11 C -0.15 -0.33 5.88 -20.08 -0.12 -0.45 16 12 C -0.05 0.18 9.18 22.50 0.21 0.39 16 13 C -0.12 0.30 5.89 -19.81 -0.12 0.19 16 14 C -0.11 0.72 9.78 71.24 0.70 1.42 16 15 C 0.16 0.01 6.66 22.64 0.15 0.16 16 16 O -0.50 0.60 11.84 -90.27 -1.07 -0.47 16 17 C -0.15 -0.23 5.27 -19.81 -0.10 -0.34 16 18 C -0.06 -0.07 2.37 71.23 0.17 0.10 16 19 O -0.54 -2.87 12.88 -148.98 -1.92 -4.79 16 20 Si 0.75 1.52 30.24 68.60 2.07 3.60 16 21 C -0.06 -0.24 8.20 22.50 0.18 -0.06 16 22 C -0.13 0.52 7.66 31.12 0.24 0.76 16 23 H 0.05 -0.23 8.14 -2.38 -0.02 -0.25 16 24 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 25 H 0.05 -0.18 8.14 -2.39 -0.02 -0.19 16 26 H 0.09 -0.09 8.14 -2.38 -0.02 -0.11 16 27 H 0.07 0.00 8.14 -2.38 -0.02 -0.02 16 28 H 0.42 -3.07 6.75 -92.70 -0.63 -3.70 16 29 H 0.16 -1.60 6.39 -2.91 -0.02 -1.62 16 30 H 0.09 -0.79 8.14 -2.38 -0.02 -0.81 16 31 H 0.08 -0.72 8.08 -2.39 -0.02 -0.74 16 32 H 0.07 -0.28 7.52 -2.38 -0.02 -0.30 16 33 H 0.41 -4.36 9.06 -74.06 -0.67 -5.03 16 34 H 0.13 -0.31 7.82 -2.39 -0.02 -0.33 16 35 H 0.38 0.29 8.70 -74.06 -0.64 -0.35 16 36 H -0.29 -2.40 7.11 99.48 0.71 -1.69 16 37 H -0.30 -2.50 6.68 99.48 0.66 -1.83 16 38 H 0.13 0.80 4.43 -2.91 -0.01 0.78 16 39 H 0.09 -0.46 8.14 -2.39 -0.02 -0.47 16 40 H 0.10 -0.54 8.12 -2.39 -0.02 -0.56 16 Total: 0.00 -21.55 335.68 -1.99 -23.55 By element: Atomic # 1 Polarization: -16.99 SS G_CDS: -0.85 Total: -17.84 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 3.78 Total: 7.43 kcal Atomic # 7 Polarization: 0.93 SS G_CDS: -2.35 Total: -1.42 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -4.65 Total: -15.31 kcal Atomic # 14 Polarization: 1.52 SS G_CDS: 2.07 Total: 3.60 kcal Total: -21.55 -1.99 -23.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_13287732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.146 kcal (2) G-P(sol) polarization free energy of solvation -21.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds