Wall clock time and date at job start Mon Mar 8 2021 04:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00008 * 2 1 4 4 H 1.09002 * 112.85419 * 341.19377 * 3 2 1 5 5 C 1.53781 * 113.69112 * 112.46478 * 3 2 1 6 6 C 1.53784 * 87.08293 * 139.99190 * 5 3 2 7 7 H 1.08997 * 113.69000 * 89.12521 * 6 5 3 8 8 N 1.46499 * 113.61282 * 220.01857 * 6 5 3 9 9 C 1.34775 * 120.00062 * 252.49808 * 8 6 5 10 10 O 1.21287 * 119.99814 * 359.97438 * 9 8 6 11 11 C 1.50706 * 120.00164 * 179.72508 * 9 8 6 12 12 C 1.50699 * 109.47171 * 180.26945 * 11 9 8 13 13 C 1.38274 * 119.93525 * 269.72830 * 12 11 9 14 14 C 1.38124 * 120.06080 * 179.76706 * 13 12 11 15 15 C 1.38827 * 119.93600 * 0.52767 * 14 13 12 16 16 N 1.40198 * 120.06491 * 179.70181 * 15 14 13 17 17 C 1.36578 * 125.66638 * 236.09841 * 16 15 14 18 18 C 1.34854 * 108.19447 * 179.83146 * 17 16 15 19 19 C 1.40940 * 107.47249 * 0.42482 * 18 17 16 20 20 C 1.34850 * 107.46474 * 359.73385 * 19 18 17 21 21 C 1.50704 * 125.89563 * 180.02562 * 20 19 18 22 22 O 1.42908 * 109.46545 * 218.09266 * 21 20 19 23 23 Si 1.86294 * 109.47393 * 338.09153 * 21 20 19 24 24 C 1.38829 * 119.86915 * 359.72453 * 15 14 13 25 25 C 1.38124 * 119.93312 * 359.97438 * 24 15 14 26 26 C 1.53779 * 87.07721 * 334.56569 * 6 5 3 27 27 H 1.08998 * 109.47322 * 300.00172 * 1 2 3 28 28 H 1.09004 * 109.46784 * 60.00419 * 1 2 3 29 29 H 1.09001 * 109.47694 * 179.97438 * 1 2 3 30 30 H 1.08998 * 113.61911 * 25.44066 * 5 3 2 31 31 H 1.09002 * 113.61441 * 254.54064 * 5 3 2 32 32 H 0.96997 * 120.00040 * 72.49125 * 8 6 5 33 33 H 1.08996 * 109.46700 * 300.27762 * 11 9 8 34 34 H 1.09004 * 109.46898 * 60.27506 * 11 9 8 35 35 H 1.07990 * 119.96823 * 0.02562 * 13 12 11 36 36 H 1.08001 * 120.03164 * 180.25396 * 14 13 12 37 37 H 1.07994 * 125.90205 * 359.97438 * 17 16 15 38 38 H 1.07999 * 126.26258 * 180.15864 * 18 17 16 39 39 H 1.07995 * 126.26781 * 179.75559 * 19 18 17 40 40 H 1.08993 * 109.47275 * 98.09897 * 21 20 19 41 41 H 0.96708 * 113.99260 * 179.97438 * 22 21 20 42 42 H 1.48500 * 110.00222 * 300.00421 * 23 21 20 43 43 H 1.48506 * 109.99988 * 61.32104 * 23 21 20 44 44 H 1.07998 * 120.03083 * 179.97438 * 24 15 14 45 45 H 1.07998 * 119.96356 * 180.02562 * 25 24 15 46 46 H 1.09009 * 113.61265 * 139.98333 * 26 6 5 47 47 H 1.09006 * 113.61373 * 270.88302 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7531 1.6510 1.3014 6 6 3.8220 2.3199 0.4210 7 1 3.6221 3.3707 0.2117 8 7 5.1928 2.0818 0.8796 9 6 5.8937 3.0790 1.4548 10 8 5.3897 4.1735 1.5924 11 6 7.3018 2.8324 1.9322 12 6 7.8555 4.0964 2.5377 13 6 8.5351 5.0017 1.7437 14 6 9.0396 6.1634 2.2950 15 6 8.8732 6.4164 3.6498 16 7 9.3895 7.5917 4.2135 17 6 10.2577 7.6555 5.2658 18 6 10.5246 8.9540 5.5134 19 6 9.7885 9.7211 4.5882 20 6 9.1034 8.8631 3.8053 21 6 8.1816 9.2419 2.6748 22 8 7.0552 8.3625 2.6637 23 14 7.5981 10.9954 2.9101 24 6 8.1949 5.5031 4.4455 25 6 7.6872 4.3461 3.8874 26 6 3.3755 1.3718 -0.7044 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1168 0.7771 1.8418 31 1 2.2132 2.3503 1.9398 32 1 5.5960 1.2065 0.7693 33 1 7.2978 2.0415 2.6822 34 1 7.9236 2.5307 1.0893 35 1 8.6680 4.8023 0.6907 36 1 9.5668 6.8721 1.6735 37 1 10.6625 6.8118 5.8049 38 1 11.1789 9.3362 6.2829 39 1 9.7757 10.7988 4.5186 40 1 8.7153 9.1605 1.7280 41 1 6.4180 8.5485 1.9604 42 1 6.8688 11.1196 4.1977 43 1 8.7575 11.9233 2.8917 44 1 8.0643 5.6971 5.4999 45 1 7.1591 3.6355 4.5058 46 1 3.3382 1.8457 -1.6854 47 1 3.9095 0.4215 -0.7124 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_13287746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:03 Heat of formation + Delta-G solvation = 5.921232 kcal Electronic energy + Delta-G solvation = -29213.408766 eV Core-core repulsion = 25137.148956 eV Total energy + Delta-G solvation = -4076.259810 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.78110 -41.31892 -40.28928 -39.37342 -37.67793 -37.24600 -34.90820 -34.13425 -32.18417 -31.80831 -31.26473 -28.23378 -27.57429 -26.73823 -26.05227 -24.93331 -23.98532 -23.21700 -21.65754 -21.51927 -20.95276 -20.56892 -18.82776 -18.35528 -18.25820 -18.00981 -17.05549 -17.02784 -16.62952 -16.23756 -16.01438 -15.95534 -15.81626 -15.59823 -15.46099 -15.04430 -14.77150 -14.61971 -14.57270 -14.51111 -14.21793 -13.58844 -13.52447 -13.45809 -13.33364 -13.27898 -12.91370 -12.78464 -12.75509 -12.63996 -12.13936 -12.12806 -12.09324 -12.04118 -11.84819 -10.95726 -10.56657 -10.47866 -10.33481 -10.02913 -10.00314 -9.31652 -9.19275 -5.01804 -0.00994 0.33274 0.94150 1.30168 1.62947 1.64737 1.77879 1.87727 2.04005 2.13227 2.67674 2.98272 3.28197 3.46015 3.55635 3.62095 3.71755 3.74519 3.82386 3.86633 3.88119 4.04665 4.07709 4.17559 4.30389 4.31781 4.33241 4.34410 4.44615 4.52143 4.54060 4.58823 4.60960 4.73184 4.73819 4.79975 4.85252 4.94775 4.95873 4.98078 5.04151 5.05775 5.08014 5.19004 5.29461 5.48880 5.54480 5.75331 5.78645 6.02978 6.25333 6.40056 6.58272 6.77399 7.29013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.058 3.942 4 H 0.100 0.900 5 C -0.168 4.168 6 C 0.125 3.875 7 H 0.103 0.897 8 N -0.708 5.708 9 C 0.514 3.486 10 O -0.575 6.575 11 C -0.098 4.098 12 C -0.064 4.064 13 C -0.092 4.092 14 C -0.106 4.106 15 C 0.118 3.882 16 N -0.394 5.394 17 C -0.015 4.015 18 C -0.201 4.201 19 C -0.226 4.226 20 C 0.019 3.981 21 C -0.060 4.060 22 O -0.559 6.559 23 Si 0.813 3.187 24 C -0.126 4.126 25 C -0.096 4.096 26 C -0.133 4.133 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.418 0.582 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.148 0.852 36 H 0.124 0.876 37 H 0.186 0.814 38 H 0.158 0.842 39 H 0.139 0.861 40 H 0.089 0.911 41 H 0.400 0.600 42 H -0.308 1.308 43 H -0.281 1.281 44 H 0.122 0.878 45 H 0.142 0.858 46 H 0.089 0.911 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 -5.198 -5.713 7.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.000 4.000 4 H 0.118 0.882 5 C -0.207 4.207 6 C 0.020 3.980 7 H 0.121 0.879 8 N -0.360 5.360 9 C 0.302 3.698 10 O -0.453 6.453 11 C -0.137 4.137 12 C -0.065 4.065 13 C -0.110 4.110 14 C -0.125 4.125 15 C 0.029 3.971 16 N -0.067 5.067 17 C -0.143 4.143 18 C -0.225 4.225 19 C -0.250 4.250 20 C -0.092 4.092 21 C -0.169 4.169 22 O -0.368 6.368 23 Si 0.717 3.283 24 C -0.145 4.145 25 C -0.115 4.115 26 C -0.171 4.171 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.255 0.745 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.142 0.858 37 H 0.203 0.797 38 H 0.176 0.824 39 H 0.157 0.843 40 H 0.107 0.893 41 H 0.251 0.749 42 H -0.237 1.237 43 H -0.208 1.208 44 H 0.140 0.860 45 H 0.160 0.840 46 H 0.108 0.892 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.462 -4.437 -4.772 6.678 hybrid contribution 0.327 -0.224 0.655 0.765 sum -1.135 -4.661 -4.118 6.322 Atomic orbital electron populations 1.22951 0.79906 1.03694 1.00724 1.87897 1.21107 1.27840 1.94686 1.23586 0.94391 0.85486 0.96532 0.88188 1.23985 0.97753 1.01062 0.97872 1.22067 0.80985 0.99779 0.95206 0.87893 1.45842 1.14333 1.14744 1.61127 1.21011 0.88353 0.83854 0.76618 1.90754 1.72086 1.25843 1.56660 1.20771 0.92095 0.96552 1.04315 1.19574 0.97215 0.96434 0.93275 1.21081 0.96793 0.92575 1.00552 1.20970 1.00531 0.98135 0.92887 1.17778 0.99470 0.86336 0.93522 1.41633 1.34734 1.04081 1.26229 1.22411 0.98458 0.99793 0.93615 1.21160 1.05687 0.92312 1.03297 1.20843 1.04911 0.98770 1.00517 1.20522 1.03124 0.83664 1.01877 1.24683 0.88332 1.07067 0.96792 1.86517 1.34305 1.57494 1.58489 0.94522 0.80257 0.70619 0.82934 1.21092 0.98238 0.95114 1.00095 1.21058 0.98471 0.96600 0.95325 1.23562 0.94848 1.00322 0.98371 0.93574 0.92947 0.88886 0.88957 0.91578 0.74481 0.85094 0.84629 0.83399 0.85835 0.79731 0.82405 0.84293 0.89312 0.74890 1.23661 1.20797 0.86026 0.84018 0.89205 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.40 -0.72 10.72 -148.98 -1.60 -2.32 16 3 C 0.06 -0.10 4.31 31.12 0.13 0.03 16 4 H 0.10 -0.38 7.87 -2.39 -0.02 -0.40 16 5 C -0.17 0.18 7.71 31.12 0.24 0.42 16 6 C 0.13 -0.26 4.24 45.52 0.19 -0.07 16 7 H 0.10 0.16 7.46 -2.39 -0.02 0.14 16 8 N -0.71 3.15 5.35 -440.03 -2.36 0.80 16 9 C 0.51 0.10 7.82 87.66 0.69 0.78 16 10 O -0.57 -5.87 15.63 -3.05 -0.05 -5.91 16 11 C -0.10 0.58 5.83 29.10 0.17 0.75 16 12 C -0.06 -0.06 4.38 -19.85 -0.09 -0.15 16 13 C -0.09 -0.17 9.69 22.25 0.22 0.05 16 14 C -0.11 -0.59 8.61 22.38 0.19 -0.40 16 15 C 0.12 1.03 4.66 38.08 0.18 1.21 16 16 N -0.39 -4.24 2.84 -333.40 -0.95 -5.18 16 17 C -0.01 -0.13 11.21 83.18 0.93 0.80 16 18 C -0.20 -1.88 10.86 22.15 0.24 -1.64 16 19 C -0.23 -2.57 9.39 22.15 0.21 -2.36 16 20 C 0.02 0.20 6.13 41.04 0.25 0.46 16 21 C -0.06 -0.28 2.47 71.24 0.18 -0.10 16 22 O -0.56 -3.21 10.92 -148.98 -1.63 -4.84 16 23 Si 0.81 1.51 30.96 68.60 2.12 3.64 16 24 C -0.13 -0.91 9.77 22.38 0.22 -0.69 16 25 C -0.10 -0.32 9.69 22.25 0.22 -0.11 16 26 C -0.13 0.60 7.66 31.12 0.24 0.84 16 27 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.05 -0.23 8.14 -2.38 -0.02 -0.25 16 29 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.42 -4.39 8.73 -92.71 -0.81 -5.20 16 33 H 0.13 -1.40 8.08 -2.39 -0.02 -1.42 16 34 H 0.14 -1.57 8.08 -2.39 -0.02 -1.59 16 35 H 0.15 -0.46 8.06 -2.92 -0.02 -0.48 16 36 H 0.12 0.56 8.06 -2.91 -0.02 0.54 16 37 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 38 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 39 H 0.14 1.36 6.50 -2.91 -0.02 1.34 16 40 H 0.09 0.05 7.96 -2.39 -0.02 0.04 16 41 H 0.40 -1.50 8.74 -74.05 -0.65 -2.14 16 42 H -0.31 -3.44 7.11 99.48 0.71 -2.73 16 43 H -0.28 -1.66 6.97 99.48 0.69 -0.97 16 44 H 0.12 0.83 8.06 -2.91 -0.02 0.81 16 45 H 0.14 -0.08 8.06 -2.91 -0.02 -0.10 16 46 H 0.09 -0.52 8.14 -2.38 -0.02 -0.54 16 47 H 0.10 -0.57 8.12 -2.38 -0.02 -0.59 16 Total: 0.00 -26.40 394.54 0.74 -25.67 By element: Atomic # 1 Polarization: -12.39 SS G_CDS: -0.45 Total: -12.83 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 5.63 Total: 0.99 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -3.30 Total: -4.39 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -3.27 Total: -13.07 kcal Atomic # 14 Polarization: 1.51 SS G_CDS: 2.12 Total: 3.64 kcal Total: -26.40 0.74 -25.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_13287746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.587 kcal (2) G-P(sol) polarization free energy of solvation -26.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds