Wall clock time and date at job start Mon Mar 8 2021 04:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99728 * 2 1 4 4 H 1.09004 * 112.90955 * 341.24492 * 3 2 1 5 5 C 1.53784 * 113.61566 * 112.49953 * 3 2 1 6 6 C 1.53778 * 87.08081 * 139.97943 * 5 3 2 7 7 H 1.08999 * 113.69218 * 89.12660 * 6 5 3 8 8 N 1.46504 * 113.61207 * 220.01967 * 6 5 3 9 9 C 1.34782 * 120.00014 * 252.49389 * 8 6 5 10 10 O 1.21598 * 119.99569 * 0.02562 * 9 8 6 11 11 C 1.47555 * 120.00030 * 180.02562 * 9 8 6 12 12 C 1.39833 * 119.99965 * 359.72871 * 11 9 8 13 13 C 1.36564 * 119.99287 * 179.69599 * 12 11 9 14 14 C 1.39814 * 120.00481 * 0.57656 * 13 12 11 15 15 C 1.47561 * 119.99975 * 179.69923 * 14 13 12 16 16 C 1.34980 * 125.27940 * 0.02562 * 15 14 13 17 17 C 1.37793 * 114.70395 * 179.97438 * 16 15 14 18 18 C 1.33747 * 115.08064 * 359.97438 * 17 16 15 19 19 C 1.50701 * 125.11761 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.47306 * 300.00227 * 19 18 17 21 21 Si 1.86304 * 109.46985 * 180.02562 * 19 18 17 22 22 S 1.75854 * 109.76307 * 359.75795 * 18 17 16 23 23 C 1.39829 * 120.00300 * 359.72216 * 14 13 12 24 24 C 1.36561 * 119.99944 * 359.97438 * 23 14 13 25 25 C 1.53778 * 87.08449 * 334.56700 * 6 5 3 26 26 H 1.09002 * 109.46799 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47409 * 300.00371 * 1 2 3 28 28 H 1.09006 * 109.46923 * 60.00362 * 1 2 3 29 29 H 1.08993 * 113.61313 * 254.52539 * 5 3 2 30 30 H 1.09000 * 113.61578 * 25.43271 * 5 3 2 31 31 H 0.97001 * 119.99776 * 72.50291 * 8 6 5 32 32 H 1.07999 * 120.00547 * 359.97438 * 12 11 9 33 33 H 1.08007 * 119.99596 * 180.30141 * 13 12 11 34 34 H 1.07998 * 122.64533 * 0.02562 * 16 15 14 35 35 H 1.07997 * 122.46107 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.46975 * 60.00392 * 19 18 17 37 37 H 0.96705 * 113.99838 * 300.00010 * 20 19 18 38 38 H 1.48491 * 109.99938 * 58.68157 * 21 19 18 39 39 H 1.48501 * 109.99733 * 180.02562 * 21 19 18 40 40 H 1.08001 * 119.99876 * 180.02562 * 23 14 13 41 41 H 1.07994 * 119.99915 * 180.02562 * 24 23 14 42 42 H 1.08998 * 113.61879 * 270.88747 * 25 6 5 43 43 H 1.08999 * 113.61887 * 139.97854 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3142 2.0798 -0.3228 5 6 2.7534 1.6490 1.3018 6 6 3.8226 2.3182 0.4223 7 1 3.6235 3.3695 0.2143 8 7 5.1934 2.0787 0.8805 9 6 5.8950 3.0747 1.4569 10 8 5.3900 4.1720 1.5970 11 6 7.2758 2.8336 1.9180 12 6 7.8544 1.5702 1.7620 13 6 9.1345 1.3490 2.1830 14 6 9.8623 2.3822 2.7810 15 6 11.2432 2.1411 3.2420 16 6 11.9059 0.9697 3.1396 17 6 13.1890 0.9881 3.6417 18 6 13.5814 2.1606 4.1518 19 6 14.9336 2.4329 4.7588 20 8 15.1393 1.5629 5.8737 21 14 15.0121 4.2041 5.3312 22 16 12.2840 3.3382 4.0021 23 6 9.2816 3.6438 2.9427 24 6 8.0037 3.8670 2.5160 25 6 3.3756 1.3719 -0.7044 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 2.2140 2.3478 1.9411 30 1 3.1166 0.7742 1.8411 31 1 5.5961 1.2033 0.7689 32 1 7.2906 0.7707 1.3045 33 1 9.5832 0.3745 2.0582 34 1 11.4656 0.0878 2.6983 35 1 13.8311 0.1199 3.6237 36 1 15.7088 2.2571 4.0129 37 1 14.4846 1.6648 6.5781 38 1 13.9400 4.4645 6.3251 39 1 16.3410 4.4855 5.9313 40 1 9.8440 4.4420 3.4042 41 1 7.5553 4.8415 2.6405 42 1 3.9089 0.4213 -0.7136 43 1 3.3385 1.8470 -1.6847 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9984030_13308390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:13 Heat of formation + Delta-G solvation = -19.973007 kcal Electronic energy + Delta-G solvation = -25925.985241 eV Core-core repulsion = 22030.492209 eV Total energy + Delta-G solvation = -3895.493033 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.107 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.53923 -40.53020 -39.61109 -38.98274 -37.52176 -37.23322 -34.49439 -33.30461 -32.23548 -30.50691 -27.97967 -27.31565 -26.82417 -25.42363 -24.38890 -23.87136 -23.28001 -21.61414 -21.15220 -20.32113 -19.19407 -18.57663 -18.26944 -17.66372 -16.92409 -16.78065 -16.51555 -16.34545 -16.27186 -16.20814 -15.85728 -15.63565 -15.49352 -15.05510 -14.89460 -14.51008 -14.48340 -14.22045 -13.81815 -13.65688 -13.60233 -13.55577 -13.24427 -13.13850 -12.82039 -12.56727 -12.36054 -12.25012 -12.19230 -12.12534 -11.90775 -11.55350 -10.93951 -10.88580 -10.65708 -10.52511 -10.23071 -10.08252 -9.58616 -9.05792 -5.12917 -0.90976 0.23485 0.30528 0.35263 0.72002 1.16053 1.51166 1.55043 1.84633 1.98789 2.01878 2.82150 2.85796 3.21341 3.34384 3.40702 3.48027 3.59496 3.64600 3.70346 3.76284 3.77757 3.81772 4.13703 4.22458 4.26358 4.32750 4.40445 4.42230 4.43908 4.49756 4.57146 4.63631 4.64863 4.73072 4.85150 4.86035 4.91135 4.94788 4.99688 5.06563 5.19770 5.24047 5.27239 5.42490 5.44629 5.69510 6.18051 6.24639 6.43229 7.16693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.064 3.936 4 H 0.093 0.907 5 C -0.169 4.169 6 C 0.124 3.876 7 H 0.121 0.879 8 N -0.714 5.714 9 C 0.561 3.439 10 O -0.534 6.534 11 C -0.137 4.137 12 C -0.078 4.078 13 C -0.110 4.110 14 C 0.013 3.987 15 C -0.148 4.148 16 C -0.119 4.119 17 C -0.104 4.104 18 C -0.217 4.217 19 C -0.033 4.033 20 O -0.523 6.523 21 Si 0.649 3.351 22 S 0.134 5.866 23 C -0.120 4.120 24 C -0.049 4.049 25 C -0.144 4.144 26 H 0.087 0.913 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.402 0.598 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.128 0.872 37 H 0.378 0.622 38 H -0.240 1.240 39 H -0.234 1.234 40 H 0.131 0.869 41 H 0.142 0.858 42 H 0.097 0.903 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.581 -1.623 -2.302 2.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.005 3.995 4 H 0.111 0.889 5 C -0.208 4.208 6 C 0.019 3.981 7 H 0.139 0.861 8 N -0.365 5.365 9 C 0.349 3.651 10 O -0.411 6.411 11 C -0.140 4.140 12 C -0.097 4.097 13 C -0.130 4.130 14 C 0.011 3.989 15 C -0.265 4.265 16 C -0.150 4.150 17 C -0.134 4.134 18 C -0.335 4.335 19 C -0.145 4.145 20 O -0.330 6.330 21 Si 0.547 3.453 22 S 0.401 5.599 23 C -0.139 4.139 24 C -0.067 4.067 25 C -0.182 4.182 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.238 0.762 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.226 0.774 38 H -0.164 1.164 39 H -0.157 1.157 40 H 0.149 0.851 41 H 0.160 0.840 42 H 0.115 0.885 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.349 0.907 -1.461 1.754 hybrid contribution -0.265 -2.598 0.338 2.634 sum -0.614 -1.691 -1.123 2.121 Atomic orbital electron populations 1.22833 0.80714 1.03078 1.00169 1.87938 1.20043 1.26847 1.94561 1.23456 0.93752 0.85824 0.96460 0.88880 1.24024 0.97452 1.01458 0.97829 1.22234 0.80304 1.00633 0.94905 0.86133 1.45823 1.14831 1.14277 1.61608 1.18251 0.85392 0.84222 0.77233 1.90805 1.70922 1.23772 1.55604 1.20008 0.94518 0.95204 1.04299 1.20968 0.95141 0.95743 0.97802 1.20871 0.94166 0.98993 0.98927 1.18297 0.90171 0.93998 0.96428 1.23093 0.97472 0.97761 1.08168 1.20390 0.94446 0.97935 1.02203 1.20002 0.96197 0.98257 0.98971 1.25040 1.00816 0.97953 1.09679 1.24377 0.93589 1.05503 0.91038 1.86629 1.55646 1.60839 1.29882 0.95223 0.83451 0.77446 0.89175 1.84166 1.04591 1.13455 1.57659 1.20978 0.95617 0.96151 1.01152 1.20947 0.93077 0.99173 0.93535 1.23632 0.95712 1.00378 0.98512 0.89453 0.93827 0.93785 0.90491 0.88699 0.76202 0.85193 0.84795 0.83752 0.83657 0.85434 0.77393 1.16386 1.15711 0.85131 0.84046 0.88474 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 101.05 1.10 1.07 16 2 O -0.38 -0.46 10.71 -35.23 -0.38 -0.83 16 3 C 0.06 -0.04 4.31 -25.91 -0.11 -0.15 16 4 H 0.09 -0.16 7.87 -51.93 -0.41 -0.57 16 5 C -0.17 0.04 7.71 -25.92 -0.20 -0.16 16 6 C 0.12 -0.04 4.24 -67.12 -0.28 -0.32 16 7 H 0.12 0.10 7.46 -51.93 -0.39 -0.29 16 8 N -0.71 0.24 5.30 -54.05 -0.29 -0.04 16 9 C 0.56 1.33 7.76 -12.46 -0.10 1.24 16 10 O -0.53 -3.20 15.93 5.28 0.08 -3.11 16 11 C -0.14 -0.14 5.88 -104.90 -0.62 -0.76 16 12 C -0.08 0.09 9.48 -39.59 -0.38 -0.29 16 13 C -0.11 0.10 9.48 -39.60 -0.38 -0.27 16 14 C 0.01 0.00 5.88 -104.91 -0.62 -0.61 16 15 C -0.15 -0.05 6.37 -36.94 -0.24 -0.28 16 16 C -0.12 0.04 9.64 -40.90 -0.39 -0.35 16 17 C -0.10 0.01 10.00 -41.32 -0.41 -0.40 16 18 C -0.22 0.04 5.73 -35.88 -0.21 -0.17 16 19 C -0.03 0.02 2.96 36.01 0.11 0.13 16 20 O -0.52 -0.33 12.86 -35.23 -0.45 -0.78 16 21 Si 0.65 -0.62 30.96 -169.99 -5.26 -5.88 16 22 S 0.13 -0.03 19.46 -107.50 -2.09 -2.12 16 23 C -0.12 -0.06 9.54 -39.59 -0.38 -0.44 16 24 C -0.05 -0.06 9.53 -39.59 -0.38 -0.44 16 25 C -0.14 0.21 7.66 -25.92 -0.20 0.01 16 26 H 0.09 -0.15 8.14 -51.93 -0.42 -0.58 16 27 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 28 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 29 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.40 -1.14 6.74 -40.82 -0.28 -1.42 16 32 H 0.13 -0.51 6.38 -52.49 -0.34 -0.85 16 33 H 0.13 -0.40 6.74 -52.48 -0.35 -0.75 16 34 H 0.14 -0.33 6.88 -52.49 -0.36 -0.69 16 35 H 0.15 -0.14 8.06 -52.49 -0.42 -0.56 16 36 H 0.13 -0.20 7.96 -51.93 -0.41 -0.62 16 37 H 0.38 -0.78 8.70 45.56 0.40 -0.38 16 38 H -0.24 -0.22 7.11 56.52 0.40 0.18 16 39 H -0.23 -0.40 7.11 56.52 0.40 0.00 16 40 H 0.13 -0.10 7.26 -52.49 -0.38 -0.48 16 41 H 0.14 0.18 7.64 -52.49 -0.40 -0.22 16 42 H 0.10 -0.17 8.12 -51.93 -0.42 -0.59 16 43 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 LS Contribution 375.12 15.07 5.65 5.65 Total: 0.00 -7.61 375.12 -11.91 -19.52 By element: Atomic # 1 Polarization: -4.71 SS G_CDS: -5.50 Total: -10.21 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -3.68 Total: -2.19 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -0.29 Total: -0.04 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.75 Total: -4.73 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: -5.26 Total: -5.88 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.09 Total: -2.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -7.61 -11.91 -19.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_13308390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.451 kcal (2) G-P(sol) polarization free energy of solvation -7.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds