Wall clock time and date at job start Mon Mar 8 2021 04:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99728 * 2 1 4 4 H 1.09004 * 112.90955 * 341.24492 * 3 2 1 5 5 C 1.53784 * 113.61566 * 112.49953 * 3 2 1 6 6 C 1.53778 * 87.08081 * 139.97943 * 5 3 2 7 7 H 1.08999 * 113.69218 * 89.12660 * 6 5 3 8 8 N 1.46504 * 113.61207 * 220.01967 * 6 5 3 9 9 C 1.34782 * 120.00014 * 252.49389 * 8 6 5 10 10 O 1.21598 * 119.99569 * 0.02562 * 9 8 6 11 11 C 1.47555 * 120.00030 * 180.02562 * 9 8 6 12 12 C 1.39833 * 119.99965 * 359.72871 * 11 9 8 13 13 C 1.36564 * 119.99287 * 179.69599 * 12 11 9 14 14 C 1.39814 * 120.00481 * 0.57656 * 13 12 11 15 15 C 1.47561 * 119.99975 * 179.69923 * 14 13 12 16 16 C 1.34980 * 125.27940 * 0.02562 * 15 14 13 17 17 C 1.37793 * 114.70395 * 179.97438 * 16 15 14 18 18 C 1.33747 * 115.08064 * 359.97438 * 17 16 15 19 19 C 1.50701 * 125.11761 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.47306 * 300.00227 * 19 18 17 21 21 Si 1.86304 * 109.46985 * 180.02562 * 19 18 17 22 22 S 1.75854 * 109.76307 * 359.75795 * 18 17 16 23 23 C 1.39829 * 120.00300 * 359.72216 * 14 13 12 24 24 C 1.36561 * 119.99944 * 359.97438 * 23 14 13 25 25 C 1.53778 * 87.08449 * 334.56700 * 6 5 3 26 26 H 1.09002 * 109.46799 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47409 * 300.00371 * 1 2 3 28 28 H 1.09006 * 109.46923 * 60.00362 * 1 2 3 29 29 H 1.08993 * 113.61313 * 254.52539 * 5 3 2 30 30 H 1.09000 * 113.61578 * 25.43271 * 5 3 2 31 31 H 0.97001 * 119.99776 * 72.50291 * 8 6 5 32 32 H 1.07999 * 120.00547 * 359.97438 * 12 11 9 33 33 H 1.08007 * 119.99596 * 180.30141 * 13 12 11 34 34 H 1.07998 * 122.64533 * 0.02562 * 16 15 14 35 35 H 1.07997 * 122.46107 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.46975 * 60.00392 * 19 18 17 37 37 H 0.96705 * 113.99838 * 300.00010 * 20 19 18 38 38 H 1.48491 * 109.99938 * 58.68157 * 21 19 18 39 39 H 1.48501 * 109.99733 * 180.02562 * 21 19 18 40 40 H 1.08001 * 119.99876 * 180.02562 * 23 14 13 41 41 H 1.07994 * 119.99915 * 180.02562 * 24 23 14 42 42 H 1.08998 * 113.61879 * 270.88747 * 25 6 5 43 43 H 1.08999 * 113.61887 * 139.97854 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3142 2.0798 -0.3228 5 6 2.7534 1.6490 1.3018 6 6 3.8226 2.3182 0.4223 7 1 3.6235 3.3695 0.2143 8 7 5.1934 2.0787 0.8805 9 6 5.8950 3.0747 1.4569 10 8 5.3900 4.1720 1.5970 11 6 7.2758 2.8336 1.9180 12 6 7.8544 1.5702 1.7620 13 6 9.1345 1.3490 2.1830 14 6 9.8623 2.3822 2.7810 15 6 11.2432 2.1411 3.2420 16 6 11.9059 0.9697 3.1396 17 6 13.1890 0.9881 3.6417 18 6 13.5814 2.1606 4.1518 19 6 14.9336 2.4329 4.7588 20 8 15.1393 1.5629 5.8737 21 14 15.0121 4.2041 5.3312 22 16 12.2840 3.3382 4.0021 23 6 9.2816 3.6438 2.9427 24 6 8.0037 3.8670 2.5160 25 6 3.3756 1.3719 -0.7044 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 2.2140 2.3478 1.9411 30 1 3.1166 0.7742 1.8411 31 1 5.5961 1.2033 0.7689 32 1 7.2906 0.7707 1.3045 33 1 9.5832 0.3745 2.0582 34 1 11.4656 0.0878 2.6983 35 1 13.8311 0.1199 3.6237 36 1 15.7088 2.2571 4.0129 37 1 14.4846 1.6648 6.5781 38 1 13.9400 4.4645 6.3251 39 1 16.3410 4.4855 5.9313 40 1 9.8440 4.4420 3.4042 41 1 7.5553 4.8415 2.6405 42 1 3.9089 0.4213 -0.7136 43 1 3.3385 1.8470 -1.6847 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_13308390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:12 Heat of formation + Delta-G solvation = -16.903777 kcal Electronic energy + Delta-G solvation = -25925.852150 eV Core-core repulsion = 22030.492209 eV Total energy + Delta-G solvation = -3895.359941 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.107 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.59450 -40.49307 -39.63333 -38.99423 -37.49963 -37.26264 -34.57647 -33.28597 -32.19928 -30.48150 -27.91571 -27.28598 -26.76500 -25.40924 -24.34080 -23.84073 -23.25165 -21.69157 -21.11692 -20.28001 -19.16944 -18.59338 -18.27056 -17.64065 -16.92721 -16.75976 -16.50240 -16.31629 -16.29642 -16.16876 -15.87852 -15.66344 -15.48152 -15.07398 -14.86535 -14.46299 -14.44281 -14.26206 -13.80419 -13.62833 -13.57166 -13.48328 -13.24585 -13.11176 -12.75369 -12.54963 -12.42421 -12.21793 -12.15159 -12.07649 -11.86164 -11.52279 -11.11331 -10.88028 -10.65300 -10.48772 -10.19254 -10.14212 -9.54790 -9.03197 -5.08777 -0.89478 0.24728 0.33751 0.39226 0.76573 1.20361 1.52405 1.55188 1.84361 1.94481 1.99624 2.81864 2.92446 3.30350 3.38774 3.44148 3.52950 3.65481 3.70865 3.74572 3.80044 3.84413 3.88274 4.19931 4.28802 4.32479 4.41330 4.50547 4.52291 4.54673 4.56654 4.62666 4.70785 4.71567 4.85253 4.91763 4.93482 4.94673 5.00025 5.02398 5.11116 5.22485 5.28800 5.32220 5.43730 5.48409 5.73118 6.24566 6.37022 6.42827 7.08762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.061 3.939 4 H 0.103 0.897 5 C -0.167 4.167 6 C 0.121 3.879 7 H 0.106 0.894 8 N -0.699 5.699 9 C 0.558 3.442 10 O -0.580 6.580 11 C -0.152 4.152 12 C -0.068 4.068 13 C -0.109 4.109 14 C 0.007 3.993 15 C -0.160 4.160 16 C -0.116 4.116 17 C -0.110 4.110 18 C -0.219 4.219 19 C -0.033 4.033 20 O -0.539 6.539 21 Si 0.709 3.291 22 S 0.123 5.877 23 C -0.129 4.129 24 C -0.063 4.063 25 C -0.133 4.133 26 H 0.093 0.907 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.416 0.584 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.388 0.612 38 H -0.267 1.267 39 H -0.272 1.272 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.104 0.896 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 -3.510 -3.226 4.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.003 3.997 4 H 0.121 0.879 5 C -0.206 4.206 6 C 0.016 3.984 7 H 0.124 0.876 8 N -0.351 5.351 9 C 0.347 3.653 10 O -0.461 6.461 11 C -0.155 4.155 12 C -0.086 4.086 13 C -0.129 4.129 14 C 0.005 3.995 15 C -0.277 4.277 16 C -0.146 4.146 17 C -0.141 4.141 18 C -0.336 4.336 19 C -0.146 4.146 20 O -0.347 6.347 21 Si 0.612 3.388 22 S 0.391 5.609 23 C -0.147 4.147 24 C -0.082 4.082 25 C -0.171 4.171 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.254 0.746 32 H 0.179 0.821 33 H 0.178 0.822 34 H 0.183 0.817 35 H 0.172 0.828 36 H 0.157 0.843 37 H 0.237 0.763 38 H -0.192 1.192 39 H -0.197 1.197 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.123 0.877 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.159 -1.017 -2.404 2.615 hybrid contribution -0.314 -2.032 0.676 2.164 sum -0.473 -3.049 -1.728 3.536 Atomic orbital electron populations 1.22960 0.79843 1.03725 1.00771 1.87901 1.21159 1.27706 1.94663 1.23556 0.94310 0.85629 0.96241 0.87909 1.23996 0.97508 1.01129 0.98006 1.22207 0.80254 1.00253 0.95716 0.87555 1.45734 1.14640 1.14371 1.60365 1.18522 0.85935 0.83940 0.76870 1.90776 1.71975 1.25647 1.57728 1.20019 0.93973 0.96280 1.05239 1.21257 0.95232 0.95372 0.96781 1.21193 0.94031 0.99684 0.97966 1.18464 0.90387 0.94177 0.96458 1.23177 0.97584 0.98100 1.08868 1.20638 0.94207 0.98313 1.01491 1.20186 0.96537 0.98464 0.98878 1.25104 1.00771 0.98049 1.09686 1.24461 0.93865 1.05162 0.91084 1.86601 1.56383 1.61218 1.30532 0.94469 0.79818 0.76649 0.87904 1.84205 1.04951 1.13871 1.57897 1.21039 0.95393 0.96807 1.01488 1.20949 0.93643 0.99120 0.94476 1.23574 0.94946 1.00250 0.98305 0.88859 0.93519 0.92908 0.91218 0.88882 0.74558 0.82140 0.82209 0.81651 0.82807 0.84265 0.76280 1.19223 1.19716 0.84740 0.85226 0.87718 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.40 -0.79 10.71 -148.98 -1.60 -2.38 16 3 C 0.06 -0.08 4.31 31.12 0.13 0.05 16 4 H 0.10 -0.38 7.87 -2.39 -0.02 -0.40 16 5 C -0.17 0.03 7.71 31.12 0.24 0.27 16 6 C 0.12 -0.03 4.24 45.51 0.19 0.16 16 7 H 0.11 0.32 7.46 -2.39 -0.02 0.30 16 8 N -0.70 0.52 5.30 -443.16 -2.35 -1.83 16 9 C 0.56 3.22 7.76 86.70 0.67 3.90 16 10 O -0.58 -8.28 15.93 -4.03 -0.06 -8.34 16 11 C -0.15 -0.39 5.88 -20.05 -0.12 -0.51 16 12 C -0.07 0.24 9.48 22.26 0.21 0.46 16 13 C -0.11 0.38 9.48 22.26 0.21 0.60 16 14 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 15 C -0.16 0.00 6.37 23.98 0.15 0.15 16 16 C -0.12 0.26 9.64 21.41 0.21 0.47 16 17 C -0.11 0.16 10.00 21.14 0.21 0.37 16 18 C -0.22 0.19 5.73 24.67 0.14 0.33 16 19 C -0.03 0.05 2.96 71.24 0.21 0.27 16 20 O -0.54 -0.53 12.86 -148.98 -1.92 -2.45 16 21 Si 0.71 -0.92 30.96 68.60 2.12 1.20 16 22 S 0.12 -0.03 19.46 -56.49 -1.10 -1.13 16 23 C -0.13 -0.25 9.54 22.26 0.21 -0.04 16 24 C -0.06 -0.26 9.53 22.26 0.21 -0.05 16 25 C -0.13 0.48 7.66 31.12 0.24 0.71 16 26 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 27 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.05 -0.22 8.14 -2.38 -0.02 -0.24 16 29 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.42 -2.88 6.74 -92.71 -0.62 -3.50 16 32 H 0.16 -1.69 6.38 -2.91 -0.02 -1.71 16 33 H 0.16 -1.44 6.74 -2.91 -0.02 -1.46 16 34 H 0.17 -1.19 6.88 -2.91 -0.02 -1.21 16 35 H 0.15 -0.52 8.06 -2.91 -0.02 -0.54 16 36 H 0.14 -0.56 7.96 -2.39 -0.02 -0.58 16 37 H 0.39 -1.60 8.70 -74.05 -0.64 -2.24 16 38 H -0.27 -0.78 7.11 99.48 0.71 -0.07 16 39 H -0.27 -1.31 7.11 99.48 0.71 -0.60 16 40 H 0.13 0.01 7.26 -2.91 -0.02 -0.01 16 41 H 0.13 0.73 7.64 -2.91 -0.02 0.71 16 42 H 0.10 -0.51 8.12 -2.39 -0.02 -0.53 16 43 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: 0.00 -18.96 375.12 -0.83 -19.80 By element: Atomic # 1 Polarization: -12.89 SS G_CDS: -0.17 Total: -13.06 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 4.24 Total: 8.20 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -2.35 Total: -1.83 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -3.58 Total: -13.17 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.12 Total: 1.20 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -1.10 Total: -1.13 kcal Total: -18.96 -0.83 -19.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_13308390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.892 kcal (2) G-P(sol) polarization free energy of solvation -18.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds