Wall clock time and date at job start Mon Mar 8 2021 04:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00051 * 2 1 4 4 H 1.09001 * 112.85127 * 18.80464 * 3 2 1 5 5 C 1.53780 * 113.61519 * 149.99849 * 3 2 1 6 6 C 1.53784 * 87.08277 * 139.98160 * 5 3 2 7 7 H 1.08998 * 113.61395 * 89.19569 * 6 5 3 8 8 N 1.46502 * 113.61500 * 220.02358 * 6 5 3 9 9 C 1.34781 * 119.99684 * 204.99846 * 8 6 5 10 10 O 1.21585 * 120.00020 * 0.02562 * 9 8 6 11 11 C 1.47529 * 119.99806 * 179.97438 * 9 8 6 12 12 C 1.40145 * 120.19350 * 180.27420 * 11 9 8 13 13 O 1.35647 * 120.14590 * 0.02562 * 12 11 9 14 14 C 1.38707 * 119.69978 * 180.25085 * 12 11 9 15 15 C 1.50702 * 119.95715 * 179.75471 * 14 12 11 16 16 O 1.42892 * 109.47242 * 74.72118 * 15 14 12 17 17 Si 1.86298 * 109.46915 * 194.72656 * 15 14 12 18 18 C 1.38060 * 120.08555 * 359.47417 * 14 12 11 19 19 C 1.38545 * 120.38685 * 0.27660 * 18 14 12 20 20 C 1.50706 * 119.84765 * 180.02562 * 19 18 14 21 21 C 1.37786 * 120.30566 * 359.97438 * 19 18 14 22 22 C 1.53783 * 113.61330 * 247.49646 * 3 2 1 23 23 H 1.08999 * 109.46811 * 60.00064 * 1 2 3 24 24 H 1.09005 * 109.46875 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46899 * 299.99928 * 1 2 3 26 26 H 1.09002 * 113.61724 * 25.43668 * 5 3 2 27 27 H 1.09002 * 113.61689 * 254.52930 * 5 3 2 28 28 H 0.97000 * 120.00118 * 24.99390 * 8 6 5 29 29 H 0.96693 * 114.00893 * 270.22938 * 13 12 11 30 30 H 1.09000 * 109.46724 * 314.72163 * 15 14 12 31 31 H 0.96703 * 114.00176 * 180.02562 * 16 15 14 32 32 H 1.48506 * 109.99834 * 178.68053 * 17 15 14 33 33 H 1.48502 * 110.00011 * 299.99318 * 17 15 14 34 34 H 1.07997 * 119.80178 * 180.25305 * 18 14 12 35 35 H 1.08997 * 109.47479 * 89.99740 * 20 19 18 36 36 H 1.09004 * 109.47045 * 210.00488 * 20 19 18 37 37 H 1.09002 * 109.47018 * 329.99774 * 20 19 18 38 38 H 1.08004 * 120.04609 * 180.02562 * 21 19 18 39 39 H 1.08999 * 113.61735 * 105.47199 * 22 3 2 40 40 H 1.08998 * 113.61760 * 334.56355 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0788 0.3238 5 6 3.3755 1.3718 0.7045 6 6 3.8228 2.3181 -0.4222 7 1 3.6235 3.3694 -0.2143 8 7 5.1935 2.0785 -0.8803 9 6 5.8951 3.0745 -1.4568 10 8 5.3906 4.1719 -1.5962 11 6 7.2757 2.8334 -1.9177 12 6 8.0110 3.8676 -2.5124 13 8 7.4566 5.0960 -2.6668 14 6 9.3063 3.6282 -2.9468 15 6 10.1003 4.7347 -3.5921 16 8 10.5321 5.6578 -2.5905 17 14 11.5861 4.0122 -4.4529 18 6 9.8713 2.3791 -2.7834 19 6 9.1495 1.3555 -2.1911 20 6 9.7784 -0.0031 -2.0183 21 6 7.8598 1.5742 -1.7585 22 6 2.7535 1.6488 -1.3018 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9089 0.4213 0.7138 27 1 3.3384 1.8471 1.6848 28 1 5.5962 1.2031 -0.7687 29 1 6.9861 5.2130 -3.5034 30 1 9.4757 5.2534 -4.3194 31 1 11.0499 6.3983 -2.9351 32 1 12.3602 5.0896 -5.1203 33 1 12.4458 3.3021 -3.4722 34 1 10.8817 2.1989 -3.1195 35 1 10.2863 -0.0485 -1.0549 36 1 9.0043 -0.7695 -2.0576 37 1 10.4996 -0.1740 -2.8176 38 1 7.3011 0.7734 -1.2970 39 1 2.2142 2.3476 -1.9412 40 1 3.1167 0.7739 -1.8410 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_13422088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:19 Heat of formation + Delta-G solvation = -96.490274 kcal Electronic energy + Delta-G solvation = -23677.572674 eV Core-core repulsion = 20039.369346 eV Total energy + Delta-G solvation = -3638.203328 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83526 -40.78239 -39.52614 -38.08841 -37.77228 -37.20901 -34.49966 -33.16633 -32.51839 -27.85959 -27.53464 -26.80662 -26.78191 -25.97380 -23.98340 -21.87594 -21.54420 -20.97041 -19.56106 -18.62185 -18.32401 -18.25785 -17.41112 -16.78190 -16.73802 -16.31823 -16.18769 -15.87006 -15.70879 -15.44999 -15.05286 -14.90286 -14.64566 -14.43724 -14.08103 -13.77542 -13.52132 -13.47107 -13.10140 -13.00048 -12.76534 -12.66140 -12.40506 -12.20254 -12.15118 -11.90748 -11.84377 -11.71444 -10.93289 -10.49720 -10.47318 -10.27126 -10.01428 -9.51542 -4.96418 -0.36783 0.06242 1.23677 1.56698 1.67272 1.89777 1.99123 2.51935 2.91680 3.13280 3.32323 3.39684 3.52080 3.57635 3.64801 3.79021 3.81894 3.86491 4.08556 4.14813 4.25579 4.34185 4.49018 4.52573 4.54650 4.62070 4.70425 4.70651 4.80452 4.85038 4.88449 4.92163 4.94444 4.96935 5.01507 5.17864 5.23486 5.41206 5.44060 5.66889 6.24174 6.43138 6.55069 6.73302 7.11600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.062 3.938 4 H 0.102 0.898 5 C -0.135 4.135 6 C 0.122 3.878 7 H 0.103 0.897 8 N -0.701 5.701 9 C 0.558 3.442 10 O -0.563 6.563 11 C -0.182 4.182 12 C 0.165 3.835 13 O -0.490 6.490 14 C -0.119 4.119 15 C -0.087 4.087 16 O -0.557 6.557 17 Si 0.781 3.219 18 C -0.080 4.080 19 C -0.095 4.095 20 C -0.117 4.117 21 C -0.060 4.060 22 C -0.164 4.164 23 H 0.047 0.953 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.414 0.586 29 H 0.402 0.598 30 H 0.085 0.915 31 H 0.392 0.608 32 H -0.287 1.287 33 H -0.285 1.285 34 H 0.150 0.850 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.161 0.839 39 H 0.070 0.930 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 -6.527 -2.943 7.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.004 3.996 4 H 0.120 0.880 5 C -0.173 4.173 6 C 0.016 3.984 7 H 0.121 0.879 8 N -0.354 5.354 9 C 0.347 3.653 10 O -0.443 6.443 11 C -0.186 4.186 12 C 0.118 3.882 13 O -0.302 6.302 14 C -0.120 4.120 15 C -0.195 4.195 16 O -0.367 6.367 17 Si 0.684 3.316 18 C -0.098 4.098 19 C -0.095 4.095 20 C -0.174 4.174 21 C -0.079 4.079 22 C -0.203 4.203 23 H 0.066 0.934 24 H 0.112 0.888 25 H 0.070 0.930 26 H 0.123 0.877 27 H 0.107 0.893 28 H 0.252 0.748 29 H 0.262 0.738 30 H 0.103 0.897 31 H 0.242 0.758 32 H -0.214 1.214 33 H -0.213 1.213 34 H 0.167 0.833 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.178 0.822 39 H 0.089 0.911 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.530 -6.229 -2.162 6.615 hybrid contribution -0.226 1.447 0.136 1.471 sum 0.304 -4.782 -2.025 5.202 Atomic orbital electron populations 1.22962 0.79828 1.03746 1.00761 1.87899 1.21164 1.27632 1.94663 1.23530 0.94167 0.85639 0.96277 0.87995 1.23587 0.95167 1.00255 0.98260 1.22179 0.80298 1.00072 0.95810 0.87903 1.45719 1.14649 1.14247 1.60770 1.18314 0.85488 0.84104 0.77416 1.90793 1.71538 1.25025 1.56913 1.20413 0.94689 0.95707 1.07775 1.18529 0.91100 0.83815 0.94712 1.84754 1.72919 1.28240 1.44286 1.19799 0.94182 0.95258 1.02776 1.25071 1.07169 0.92838 0.94393 1.86597 1.74566 1.39634 1.35906 0.94142 0.74420 0.82128 0.80874 1.21378 1.00250 0.91503 0.96626 1.20109 0.93819 0.97526 0.98074 1.20926 1.01826 0.91045 1.03563 1.21433 0.95103 0.94788 0.96567 1.23973 0.97271 1.01131 0.97895 0.93447 0.88803 0.93009 0.87714 0.89258 0.74771 0.73824 0.89707 0.75753 1.21402 1.21255 0.83293 0.90345 0.89350 0.89824 0.82188 0.91087 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.39 -0.91 10.71 -148.98 -1.60 -2.51 16 3 C 0.06 -0.04 4.31 31.12 0.13 0.09 16 4 H 0.10 -0.29 7.87 -2.39 -0.02 -0.31 16 5 C -0.13 0.31 7.66 31.12 0.24 0.54 16 6 C 0.12 0.13 4.24 45.52 0.19 0.32 16 7 H 0.10 0.50 7.46 -2.39 -0.02 0.49 16 8 N -0.70 -0.70 5.31 -443.19 -2.35 -3.05 16 9 C 0.56 4.50 7.76 86.69 0.67 5.17 16 10 O -0.56 -9.07 14.76 16.93 0.25 -8.82 16 11 C -0.18 -1.00 5.89 -20.01 -0.12 -1.11 16 12 C 0.17 1.32 6.69 22.85 0.15 1.47 16 13 O -0.49 -5.13 10.91 -68.70 -0.75 -5.88 16 14 C -0.12 -0.52 5.30 -19.79 -0.10 -0.63 16 15 C -0.09 -0.17 2.36 71.24 0.17 0.00 16 16 O -0.56 -3.66 12.86 -148.98 -1.92 -5.57 16 17 Si 0.78 -1.91 30.19 68.60 2.07 0.16 16 18 C -0.08 -0.03 8.30 22.30 0.19 0.15 16 19 C -0.10 0.20 5.87 -19.90 -0.12 0.08 16 20 C -0.12 0.90 10.00 71.24 0.71 1.62 16 21 C -0.06 0.08 9.18 22.52 0.21 0.29 16 22 C -0.16 -0.03 7.71 31.12 0.24 0.21 16 23 H 0.05 -0.15 8.14 -2.39 -0.02 -0.16 16 24 H 0.09 -0.35 8.14 -2.38 -0.02 -0.37 16 25 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.10 -0.38 8.12 -2.39 -0.02 -0.40 16 27 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.41 -2.12 6.76 -92.71 -0.63 -2.74 16 29 H 0.40 1.15 9.06 -74.06 -0.67 0.48 16 30 H 0.08 -0.09 7.84 -2.39 -0.02 -0.11 16 31 H 0.39 -0.71 8.74 -74.06 -0.65 -1.35 16 32 H -0.29 -0.58 7.11 99.48 0.71 0.13 16 33 H -0.29 -0.78 6.74 99.48 0.67 -0.11 16 34 H 0.15 -0.45 4.87 -2.91 -0.01 -0.46 16 35 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 36 H 0.09 -0.93 8.08 -2.38 -0.02 -0.95 16 37 H 0.08 -0.78 8.08 -2.39 -0.02 -0.80 16 38 H 0.16 -1.31 6.40 -2.91 -0.02 -1.33 16 39 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 Total: 0.00 -24.04 335.00 -1.35 -25.38 By element: Atomic # 1 Polarization: -8.26 SS G_CDS: -0.85 Total: -9.11 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 3.79 Total: 9.39 kcal Atomic # 7 Polarization: -0.70 SS G_CDS: -2.35 Total: -3.05 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -4.01 Total: -22.78 kcal Atomic # 14 Polarization: -1.91 SS G_CDS: 2.07 Total: 0.16 kcal Total: -24.04 -1.35 -25.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_13422088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.107 kcal (2) G-P(sol) polarization free energy of solvation -24.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds