Wall clock time and date at job start Mon Mar 8 2021 04:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99922 * 2 1 4 4 H 1.09003 * 112.90448 * 341.24888 * 3 2 1 5 5 C 1.53953 * 113.66830 * 112.43835 * 3 2 1 6 6 C 1.53773 * 87.01747 * 139.93029 * 5 3 2 7 7 H 1.09002 * 113.61589 * 89.23467 * 6 5 3 8 8 N 1.46505 * 113.61353 * 220.04424 * 6 5 3 9 9 C 1.34771 * 120.00402 * 252.80846 * 8 6 5 10 10 O 1.21278 * 120.00010 * 5.11252 * 9 8 6 11 11 C 1.50698 * 120.00335 * 185.10965 * 9 8 6 12 12 C 1.53022 * 109.32715 * 143.39526 * 11 9 8 13 13 C 1.53544 * 108.57121 * 169.81866 * 12 11 9 14 14 N 1.47033 * 107.65830 * 299.06485 * 13 12 11 15 15 C 1.38923 * 118.88340 * 43.66367 * 14 13 12 16 16 C 1.31112 * 121.84774 * 346.66916 * 15 14 13 17 17 C 1.50707 * 118.54496 * 180.14531 * 16 15 14 18 18 O 1.42895 * 109.47375 * 101.22289 * 17 16 15 19 19 Si 1.86308 * 109.46852 * 341.22219 * 17 16 15 20 20 C 1.53774 * 87.17904 * 334.63806 * 6 5 3 21 21 H 1.09002 * 109.46787 * 60.00248 * 1 2 3 22 22 H 1.08997 * 109.47090 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47500 * 300.00647 * 1 2 3 24 24 H 1.09002 * 113.61272 * 25.40673 * 5 3 2 25 25 H 1.09003 * 113.66567 * 254.46434 * 5 3 2 26 26 H 0.97004 * 119.99562 * 72.81229 * 8 6 5 27 27 H 1.09004 * 109.18578 * 23.82913 * 11 9 8 28 28 H 1.08998 * 109.60357 * 50.10207 * 12 11 9 29 29 H 1.08997 * 109.62637 * 289.54612 * 12 11 9 30 30 H 1.08996 * 109.81899 * 179.52512 * 13 12 11 31 31 H 1.08999 * 109.82135 * 58.60751 * 13 12 11 32 32 H 0.97000 * 120.55187 * 223.68604 * 14 13 12 33 33 H 1.08002 * 119.07501 * 166.68047 * 15 14 13 34 34 H 1.09000 * 109.46660 * 221.22322 * 17 16 15 35 35 H 0.96701 * 114.00080 * 185.07919 * 18 17 16 36 36 H 1.48499 * 110.00093 * 298.68288 * 19 17 16 37 37 H 1.48492 * 109.99843 * 60.00264 * 19 17 16 38 38 H 1.09000 * 113.61803 * 139.93626 * 20 6 5 39 39 H 1.08994 * 113.61735 * 270.84761 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3142 2.0797 -0.3228 5 6 2.7533 1.6512 1.3033 6 6 3.8227 2.3181 0.4222 7 1 3.6236 3.3694 0.2143 8 7 5.1935 2.0787 0.8804 9 6 5.8936 3.0735 1.4604 10 8 5.3597 4.1385 1.6874 11 6 7.3400 2.8626 1.8271 12 6 8.1176 4.1585 1.5868 13 6 9.5176 4.0094 2.1993 14 7 9.3513 3.7827 3.6425 15 6 8.3719 2.8970 4.0741 16 6 7.4332 2.4583 3.2707 17 6 6.4057 1.5016 3.8184 18 8 5.1963 2.2097 4.0974 19 14 7.0496 0.7300 5.3872 20 6 3.3756 1.3719 -0.7045 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 3.1161 0.7771 1.8441 25 1 2.2145 2.3514 1.9416 26 1 5.5971 1.2040 0.7663 27 1 7.7560 2.0713 1.2033 28 1 7.5972 4.9905 2.0612 29 1 8.2041 4.3402 0.5156 30 1 10.0930 4.9199 2.0321 31 1 10.0298 3.1596 1.7482 32 1 9.9158 4.2440 4.2824 33 1 8.3839 2.5605 5.1003 34 1 6.2084 0.7208 3.0839 35 1 4.5156 1.6724 4.5252 36 1 8.2900 -0.0359 5.1046 37 1 7.3225 1.7842 6.3967 38 1 3.3385 1.8470 -1.6848 39 1 3.9088 0.4213 -0.7137 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9984030_15608500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:44 Heat of formation + Delta-G solvation = -55.985557 kcal Electronic energy + Delta-G solvation = -21779.976278 eV Core-core repulsion = 18497.700310 eV Total energy + Delta-G solvation = -3282.275969 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40110 -40.32001 -38.88216 -37.40003 -37.08164 -34.08747 -33.16588 -32.86443 -27.94125 -27.26446 -26.69000 -26.11965 -24.40263 -23.11238 -21.50997 -20.97260 -19.13209 -18.74945 -18.20880 -18.07346 -17.68695 -16.79019 -16.63266 -16.06197 -16.03046 -15.47012 -15.18115 -15.00718 -14.75206 -14.56939 -14.42232 -14.04281 -13.65164 -13.42989 -13.34198 -13.18744 -12.89975 -12.70959 -12.39646 -12.06815 -12.04322 -11.82886 -11.78804 -11.62175 -11.32993 -10.46200 -10.39153 -10.10396 -9.77794 -8.53369 -4.93536 1.20650 1.34825 1.65223 1.96147 2.03337 2.30601 2.49859 2.97475 3.51291 3.58370 3.62447 3.68969 3.86738 3.90262 3.93847 4.02988 4.13247 4.26827 4.31938 4.38973 4.47885 4.48949 4.49955 4.53316 4.67481 4.72455 4.75497 4.78463 4.79950 5.00357 5.07714 5.14139 5.20524 5.29192 5.41440 5.72444 6.22630 6.27089 6.71630 6.74318 6.83454 7.55417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.061 3.939 4 H 0.090 0.910 5 C -0.161 4.161 6 C 0.130 3.870 7 H 0.113 0.887 8 N -0.719 5.719 9 C 0.541 3.459 10 O -0.529 6.529 11 C -0.040 4.040 12 C -0.126 4.126 13 C 0.121 3.879 14 N -0.747 5.747 15 C 0.148 3.852 16 C -0.225 4.225 17 C -0.048 4.048 18 O -0.537 6.537 19 Si 0.662 3.338 20 C -0.145 4.145 21 H 0.042 0.958 22 H 0.086 0.914 23 H 0.043 0.957 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.398 0.602 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.404 0.596 33 H 0.129 0.871 34 H 0.059 0.941 35 H 0.371 0.629 36 H -0.257 1.257 37 H -0.254 1.254 38 H 0.079 0.921 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 -3.501 -0.697 3.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.294 6.294 3 C 0.003 3.997 4 H 0.108 0.892 5 C -0.200 4.200 6 C 0.025 3.975 7 H 0.131 0.869 8 N -0.370 5.370 9 C 0.327 3.673 10 O -0.404 6.404 11 C -0.061 4.061 12 C -0.165 4.165 13 C -0.004 4.004 14 N -0.378 5.378 15 C 0.026 3.974 16 C -0.236 4.236 17 C -0.160 4.160 18 O -0.342 6.342 19 Si 0.565 3.435 20 C -0.184 4.184 21 H 0.061 0.939 22 H 0.105 0.895 23 H 0.061 0.939 24 H 0.112 0.888 25 H 0.093 0.907 26 H 0.232 0.768 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.238 0.762 33 H 0.146 0.854 34 H 0.077 0.923 35 H 0.218 0.782 36 H -0.182 1.182 37 H -0.180 1.180 38 H 0.098 0.902 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.210 -2.430 -0.410 2.745 hybrid contribution 0.294 0.096 -0.195 0.365 sum 1.504 -2.334 -0.606 2.842 Atomic orbital electron populations 1.22816 0.80874 1.02953 1.00102 1.87934 1.19892 1.27008 1.94596 1.23533 0.93672 0.85585 0.96930 0.89193 1.23967 0.97350 1.01275 0.97438 1.22072 0.81111 0.99952 0.94398 0.86868 1.45876 1.14550 1.14235 1.62311 1.20188 0.87849 0.83652 0.75617 1.90669 1.71011 1.26643 1.52039 1.19702 0.92963 0.98872 0.94577 1.21813 0.95590 0.97435 1.01646 1.21631 0.96592 1.01441 0.80693 1.44545 1.38630 1.47618 1.06982 1.20434 0.89399 0.90552 0.97039 1.19557 0.99500 1.08972 0.95542 1.24344 0.88459 0.96258 1.06985 1.86651 1.24626 1.40055 1.82838 0.95427 0.85767 0.83124 0.79216 1.23632 0.95769 1.00469 0.98482 0.93921 0.89545 0.93858 0.88833 0.90685 0.76782 0.89736 0.89486 0.90300 0.89725 0.91966 0.76195 0.85434 0.92262 0.78230 1.18175 1.18010 0.90242 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.85 101.05 1.10 1.08 16 2 O -0.38 -0.59 10.72 -35.23 -0.38 -0.97 16 3 C 0.06 0.00 4.31 -25.83 -0.11 -0.11 16 4 H 0.09 -0.08 7.87 -51.93 -0.41 -0.49 16 5 C -0.16 -0.05 7.73 -25.83 -0.20 -0.25 16 6 C 0.13 0.08 4.20 -67.12 -0.28 -0.20 16 7 H 0.11 0.26 7.53 -51.93 -0.39 -0.14 16 8 N -0.72 -0.44 5.35 -53.02 -0.28 -0.72 16 9 C 0.54 1.86 5.00 -10.99 -0.05 1.81 16 10 O -0.53 -4.12 15.74 5.56 0.09 -4.03 16 11 C -0.04 -0.07 2.68 -93.15 -0.25 -0.32 16 12 C -0.13 -0.17 5.31 -26.44 -0.14 -0.31 16 13 C 0.12 -0.07 7.16 -3.47 -0.02 -0.09 16 14 N -0.75 -0.36 5.83 -60.68 -0.35 -0.72 16 15 C 0.15 0.31 9.60 -16.08 -0.15 0.16 16 16 C -0.23 -0.51 5.03 -101.33 -0.51 -1.02 16 17 C -0.05 -0.03 2.21 36.01 0.08 0.05 16 18 O -0.54 -1.01 11.82 -35.23 -0.42 -1.43 16 19 Si 0.66 -0.37 30.18 -169.99 -5.13 -5.50 16 20 C -0.15 0.10 7.66 -25.92 -0.20 -0.10 16 21 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 22 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 23 H 0.04 -0.05 8.14 -51.93 -0.42 -0.48 16 24 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 25 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 26 H 0.40 -0.64 8.71 -40.82 -0.36 -1.00 16 27 H 0.08 -0.03 8.12 -51.93 -0.42 -0.45 16 28 H 0.09 0.36 7.51 -51.93 -0.39 -0.03 16 29 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 31 H 0.06 -0.07 8.14 -51.93 -0.42 -0.50 16 32 H 0.40 -0.55 8.96 -40.82 -0.37 -0.92 16 33 H 0.13 0.23 4.46 -52.49 -0.23 0.00 16 34 H 0.06 -0.06 7.96 -51.93 -0.41 -0.47 16 35 H 0.37 -0.90 8.61 45.56 0.39 -0.50 16 36 H -0.26 -0.49 7.11 56.52 0.40 -0.09 16 37 H -0.25 -0.59 6.61 56.52 0.37 -0.22 16 38 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 39 H 0.10 -0.09 8.12 -51.93 -0.42 -0.51 16 LS Contribution 316.22 15.07 4.77 4.77 Total: 0.00 -8.52 316.22 -8.50 -17.02 By element: Atomic # 1 Polarization: -3.08 SS G_CDS: -6.04 Total: -9.12 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -0.75 Total: 0.70 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -0.64 Total: -1.44 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.71 Total: -6.42 kcal Atomic # 14 Polarization: -0.37 SS G_CDS: -5.13 Total: -5.50 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -8.52 -8.50 -17.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_15608500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.968 kcal (2) G-P(sol) polarization free energy of solvation -8.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds