Wall clock time and date at job start Mon Mar 8 2021 04:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99922 * 2 1 4 4 H 1.09003 * 112.90448 * 341.24888 * 3 2 1 5 5 C 1.53953 * 113.66830 * 112.43835 * 3 2 1 6 6 C 1.53773 * 87.01747 * 139.93029 * 5 3 2 7 7 H 1.09002 * 113.61589 * 89.23467 * 6 5 3 8 8 N 1.46505 * 113.61353 * 220.04424 * 6 5 3 9 9 C 1.34771 * 120.00402 * 252.80846 * 8 6 5 10 10 O 1.21278 * 120.00010 * 5.11252 * 9 8 6 11 11 C 1.50698 * 120.00335 * 185.10965 * 9 8 6 12 12 C 1.53022 * 109.32715 * 143.39526 * 11 9 8 13 13 C 1.53544 * 108.57121 * 169.81866 * 12 11 9 14 14 N 1.47033 * 107.65830 * 299.06485 * 13 12 11 15 15 C 1.38923 * 118.88340 * 43.66367 * 14 13 12 16 16 C 1.31112 * 121.84774 * 346.66916 * 15 14 13 17 17 C 1.50707 * 118.54496 * 180.14531 * 16 15 14 18 18 O 1.42895 * 109.47375 * 101.22289 * 17 16 15 19 19 Si 1.86308 * 109.46852 * 341.22219 * 17 16 15 20 20 C 1.53774 * 87.17904 * 334.63806 * 6 5 3 21 21 H 1.09002 * 109.46787 * 60.00248 * 1 2 3 22 22 H 1.08997 * 109.47090 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47500 * 300.00647 * 1 2 3 24 24 H 1.09002 * 113.61272 * 25.40673 * 5 3 2 25 25 H 1.09003 * 113.66567 * 254.46434 * 5 3 2 26 26 H 0.97004 * 119.99562 * 72.81229 * 8 6 5 27 27 H 1.09004 * 109.18578 * 23.82913 * 11 9 8 28 28 H 1.08998 * 109.60357 * 50.10207 * 12 11 9 29 29 H 1.08997 * 109.62637 * 289.54612 * 12 11 9 30 30 H 1.08996 * 109.81899 * 179.52512 * 13 12 11 31 31 H 1.08999 * 109.82135 * 58.60751 * 13 12 11 32 32 H 0.97000 * 120.55187 * 223.68604 * 14 13 12 33 33 H 1.08002 * 119.07501 * 166.68047 * 15 14 13 34 34 H 1.09000 * 109.46660 * 221.22322 * 17 16 15 35 35 H 0.96701 * 114.00080 * 185.07919 * 18 17 16 36 36 H 1.48499 * 110.00093 * 298.68288 * 19 17 16 37 37 H 1.48492 * 109.99843 * 60.00264 * 19 17 16 38 38 H 1.09000 * 113.61803 * 139.93626 * 20 6 5 39 39 H 1.08994 * 113.61735 * 270.84761 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3142 2.0797 -0.3228 5 6 2.7533 1.6512 1.3033 6 6 3.8227 2.3181 0.4222 7 1 3.6236 3.3694 0.2143 8 7 5.1935 2.0787 0.8804 9 6 5.8936 3.0735 1.4604 10 8 5.3597 4.1385 1.6874 11 6 7.3400 2.8626 1.8271 12 6 8.1176 4.1585 1.5868 13 6 9.5176 4.0094 2.1993 14 7 9.3513 3.7827 3.6425 15 6 8.3719 2.8970 4.0741 16 6 7.4332 2.4583 3.2707 17 6 6.4057 1.5016 3.8184 18 8 5.1963 2.2097 4.0974 19 14 7.0496 0.7300 5.3872 20 6 3.3756 1.3719 -0.7045 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 3.1161 0.7771 1.8441 25 1 2.2145 2.3514 1.9416 26 1 5.5971 1.2040 0.7663 27 1 7.7560 2.0713 1.2033 28 1 7.5972 4.9905 2.0612 29 1 8.2041 4.3402 0.5156 30 1 10.0930 4.9199 2.0321 31 1 10.0298 3.1596 1.7482 32 1 9.9158 4.2440 4.2824 33 1 8.3839 2.5605 5.1003 34 1 6.2084 0.7208 3.0839 35 1 4.5156 1.6724 4.5252 36 1 8.2900 -0.0359 5.1046 37 1 7.3225 1.7842 6.3967 38 1 3.3385 1.8470 -1.6848 39 1 3.9088 0.4213 -0.7137 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_15608500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:43 Heat of formation + Delta-G solvation = -59.519418 kcal Electronic energy + Delta-G solvation = -21780.129518 eV Core-core repulsion = 18497.700310 eV Total energy + Delta-G solvation = -3282.429208 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.54308 -40.35693 -39.03446 -37.46668 -37.15776 -34.27412 -33.23430 -32.93268 -27.93114 -27.28981 -26.69425 -26.18202 -24.44826 -23.16430 -21.69720 -21.00607 -19.21760 -18.80498 -18.29865 -18.12789 -17.80509 -16.82832 -16.70769 -16.14334 -16.04550 -15.57685 -15.24197 -15.06735 -14.83713 -14.62971 -14.53699 -14.09060 -13.73382 -13.42080 -13.40842 -13.29521 -12.97803 -12.70304 -12.47035 -12.11883 -12.07253 -11.96050 -11.79944 -11.70608 -11.37093 -10.69033 -10.42563 -10.13802 -9.93090 -8.59405 -4.91727 1.08820 1.34818 1.64097 1.79147 1.95914 2.22327 2.50553 2.98843 3.48835 3.54297 3.60322 3.62855 3.84470 3.90324 3.91020 4.01182 4.09884 4.23877 4.28750 4.37051 4.50687 4.53105 4.56621 4.57992 4.65691 4.72613 4.78532 4.79390 4.88797 5.00333 5.03731 5.06854 5.14765 5.18228 5.34998 5.62862 6.17087 6.29165 6.63995 6.76045 6.97414 7.38125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.060 3.940 4 H 0.097 0.903 5 C -0.156 4.156 6 C 0.126 3.874 7 H 0.094 0.906 8 N -0.704 5.704 9 C 0.541 3.459 10 O -0.580 6.580 11 C -0.041 4.041 12 C -0.126 4.126 13 C 0.123 3.877 14 N -0.749 5.749 15 C 0.135 3.865 16 C -0.244 4.244 17 C -0.059 4.059 18 O -0.561 6.561 19 Si 0.753 3.247 20 C -0.133 4.133 21 H 0.049 0.951 22 H 0.094 0.906 23 H 0.047 0.953 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.411 0.589 27 H 0.110 0.890 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.411 0.589 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.388 0.612 36 H -0.287 1.287 37 H -0.298 1.298 38 H 0.087 0.913 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.697 -4.723 -1.393 4.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.313 6.313 3 C 0.001 3.999 4 H 0.115 0.885 5 C -0.195 4.195 6 C 0.021 3.979 7 H 0.112 0.888 8 N -0.355 5.355 9 C 0.328 3.672 10 O -0.459 6.459 11 C -0.063 4.063 12 C -0.164 4.164 13 C -0.001 4.001 14 N -0.380 5.380 15 C 0.012 3.988 16 C -0.255 4.255 17 C -0.170 4.170 18 O -0.369 6.369 19 Si 0.660 3.340 20 C -0.171 4.171 21 H 0.068 0.932 22 H 0.112 0.888 23 H 0.065 0.935 24 H 0.115 0.885 25 H 0.083 0.917 26 H 0.248 0.752 27 H 0.128 0.872 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.246 0.754 33 H 0.142 0.858 34 H 0.096 0.904 35 H 0.237 0.763 36 H -0.214 1.214 37 H -0.227 1.227 38 H 0.105 0.895 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.437 -3.697 -1.130 4.124 hybrid contribution 0.200 0.495 0.042 0.536 sum 1.637 -3.201 -1.088 3.756 Atomic orbital electron populations 1.22947 0.79944 1.03687 1.00666 1.87899 1.21047 1.27652 1.94686 1.23594 0.94113 0.85444 0.96705 0.88486 1.23915 0.97142 1.00992 0.97498 1.22023 0.81180 0.99306 0.95440 0.88820 1.45775 1.14375 1.14308 1.61049 1.20519 0.88544 0.83188 0.74931 1.90645 1.72134 1.28731 1.54374 1.19794 0.91878 0.99760 0.94844 1.21782 0.96327 0.96121 1.02200 1.21735 0.95624 1.02868 0.79915 1.44651 1.38345 1.47258 1.07767 1.20554 0.90142 0.91100 0.97002 1.19855 0.99988 1.09643 0.96003 1.24563 0.87933 0.96197 1.08313 1.86617 1.25531 1.41454 1.83271 0.94460 0.83403 0.80077 0.76038 1.23559 0.95114 1.00266 0.98188 0.93197 0.88792 0.93477 0.88495 0.91724 0.75198 0.87240 0.92885 0.89119 0.87960 0.90635 0.75371 0.85826 0.90396 0.76309 1.21413 1.22696 0.89480 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.39 -1.01 10.72 -148.98 -1.60 -2.61 16 3 C 0.06 -0.01 4.31 31.18 0.13 0.13 16 4 H 0.10 -0.18 7.87 -2.39 -0.02 -0.20 16 5 C -0.16 -0.14 7.73 31.18 0.24 0.11 16 6 C 0.13 0.21 4.20 45.51 0.19 0.40 16 7 H 0.09 0.57 7.53 -2.39 -0.02 0.55 16 8 N -0.70 -0.83 5.35 -440.06 -2.36 -3.18 16 9 C 0.54 4.13 5.00 87.66 0.44 4.57 16 10 O -0.58 -10.22 15.74 -3.02 -0.05 -10.26 16 11 C -0.04 -0.15 2.68 -12.44 -0.03 -0.18 16 12 C -0.13 -0.40 5.31 30.78 0.16 -0.24 16 13 C 0.12 -0.18 7.16 86.46 0.62 0.44 16 14 N -0.75 -0.99 5.83 -345.89 -2.02 -3.01 16 15 C 0.13 0.67 9.60 83.42 0.80 1.47 16 16 C -0.24 -1.20 5.03 -16.75 -0.08 -1.28 16 17 C -0.06 -0.07 2.21 71.24 0.16 0.09 16 18 O -0.56 -2.40 11.82 -148.98 -1.76 -4.16 16 19 Si 0.75 -0.71 30.18 68.60 2.07 1.36 16 20 C -0.13 0.26 7.66 31.12 0.24 0.50 16 21 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 22 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 23 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 24 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 25 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.41 -1.76 8.71 -92.71 -0.81 -2.57 16 27 H 0.11 -0.22 8.12 -2.38 -0.02 -0.24 16 28 H 0.05 0.55 7.51 -2.39 -0.02 0.53 16 29 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.10 -0.53 8.14 -2.39 -0.02 -0.54 16 31 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.41 -0.96 8.96 -92.71 -0.83 -1.79 16 33 H 0.12 0.61 4.46 -2.91 -0.01 0.60 16 34 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 35 H 0.39 -1.84 8.61 -74.06 -0.64 -2.48 16 36 H -0.29 -1.14 7.11 99.48 0.71 -0.44 16 37 H -0.30 -1.84 6.61 99.48 0.66 -1.18 16 38 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.10 -0.33 8.12 -2.39 -0.02 -0.34 16 Total: 0.00 -21.34 316.22 -2.82 -24.17 By element: Atomic # 1 Polarization: -8.28 SS G_CDS: -1.21 Total: -9.49 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 4.10 Total: 7.19 kcal Atomic # 7 Polarization: -1.82 SS G_CDS: -4.37 Total: -6.19 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -3.40 Total: -17.03 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: 2.07 Total: 1.36 kcal Total: -21.34 -2.82 -24.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_15608500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.354 kcal (2) G-P(sol) polarization free energy of solvation -21.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds