Wall clock time and date at job start Mon Mar 8 2021 04:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00169 * 2 1 4 4 H 1.08993 * 112.84897 * 341.20626 * 3 2 1 5 5 C 1.53960 * 113.66607 * 112.44230 * 3 2 1 6 6 C 1.53779 * 87.01896 * 139.93474 * 5 3 2 7 7 H 1.08999 * 113.61541 * 89.23491 * 6 5 3 8 8 N 1.46498 * 113.61460 * 220.04910 * 6 5 3 9 9 C 1.34773 * 120.00182 * 254.13680 * 8 6 5 10 10 O 1.21279 * 120.00344 * 0.02562 * 9 8 6 11 11 C 1.50703 * 120.00193 * 179.97438 * 9 8 6 12 12 C 1.52998 * 109.47225 * 180.02562 * 11 9 8 13 13 O 1.42901 * 109.47046 * 180.02562 * 12 11 9 14 14 C 1.35905 * 116.99604 * 180.02562 * 13 12 11 15 15 C 1.38719 * 120.05115 * 180.02562 * 14 13 12 16 16 C 1.38169 * 119.93968 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.96631 * 179.97438 * 16 15 14 18 18 O 1.42902 * 109.47259 * 65.00142 * 17 16 15 19 19 Si 1.86303 * 109.46952 * 184.99619 * 17 16 15 20 20 C 1.38240 * 120.05585 * 359.97299 * 16 15 14 21 21 C 1.38282 * 120.11355 * 0.02562 * 20 16 15 22 22 C 1.38124 * 120.05644 * 359.74998 * 21 20 16 23 23 C 1.53782 * 113.61602 * 210.00239 * 3 2 1 24 24 H 1.08999 * 109.47564 * 59.99118 * 1 2 3 25 25 H 1.08999 * 109.46939 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46681 * 299.99632 * 1 2 3 27 27 H 1.09005 * 113.61053 * 25.41912 * 5 3 2 28 28 H 1.08999 * 113.66799 * 254.46325 * 5 3 2 29 29 H 0.97005 * 119.99895 * 74.13793 * 8 6 5 30 30 H 1.08999 * 109.46845 * 60.00204 * 11 9 8 31 31 H 1.08996 * 109.47472 * 300.00289 * 11 9 8 32 32 H 1.08999 * 109.47084 * 60.00299 * 12 11 9 33 33 H 1.08998 * 109.47592 * 300.00401 * 12 11 9 34 34 H 1.07996 * 120.02463 * 359.95185 * 15 14 13 35 35 H 1.08999 * 109.47407 * 304.99703 * 17 16 15 36 36 H 0.96698 * 114.00182 * 59.99194 * 18 17 16 37 37 H 1.48498 * 110.00296 * 180.02562 * 19 17 16 38 38 H 1.48503 * 110.00062 * 301.32290 * 19 17 16 39 39 H 1.08001 * 119.93843 * 180.02562 * 20 16 15 40 40 H 1.08006 * 119.97245 * 180.02562 * 21 20 16 41 41 H 1.08001 * 120.02871 * 180.27359 * 22 21 20 42 42 H 1.08997 * 113.61191 * 105.47383 * 23 3 2 43 43 H 1.08993 * 113.69039 * 334.58258 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 -0.3236 5 6 2.7534 1.6510 1.3033 6 6 3.8227 2.3181 0.4222 7 1 3.6236 3.3694 0.2144 8 7 5.1935 2.0785 0.8803 9 6 5.8843 3.0655 1.4845 10 8 5.3710 4.1518 1.6496 11 6 7.2942 2.8189 1.9562 12 6 7.8457 4.0912 2.6025 13 8 9.1828 3.8575 3.0493 14 6 9.8222 4.8947 3.6513 15 6 11.1224 4.7378 4.1089 16 6 11.7705 5.7939 4.7202 17 6 13.1827 5.6239 5.2180 18 8 14.0546 5.3968 4.1088 19 14 13.7131 7.1657 6.1193 20 6 11.1245 7.0062 4.8755 21 6 9.8285 7.1651 4.4202 22 6 9.1779 6.1138 3.8042 23 6 3.3755 1.3719 -0.7046 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 3.1163 0.7768 1.8439 28 1 2.2147 2.3513 1.9417 29 1 5.6039 1.2095 0.7486 30 1 7.9185 2.5426 1.1065 31 1 7.2967 2.0102 2.6870 32 1 7.2213 4.3671 3.4523 33 1 7.8432 4.9003 1.8721 34 1 11.6273 3.7908 3.9877 35 1 13.2287 4.7722 5.8967 36 1 14.0645 6.1160 3.4625 37 1 15.1045 7.0111 6.6147 38 1 13.6244 8.3393 5.2138 39 1 11.6331 7.8305 5.3532 40 1 9.3262 8.1134 4.5423 41 1 8.1672 6.2398 3.4449 42 1 3.3383 1.8472 -1.6847 43 1 3.9097 0.4219 -0.7148 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_4549614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:59 Heat of formation + Delta-G solvation = -95.081396 kcal Electronic energy + Delta-G solvation = -24146.116441 eV Core-core repulsion = 20352.436588 eV Total energy + Delta-G solvation = -3793.679853 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.50660 -41.13827 -39.94015 -39.13381 -37.42616 -37.27332 -34.36001 -33.11104 -32.49769 -30.82619 -27.87036 -27.09652 -26.78908 -26.00345 -24.20567 -23.69376 -22.09843 -21.54291 -20.91798 -19.38334 -18.30458 -18.20685 -17.68326 -17.50645 -17.15901 -17.00353 -16.76211 -16.34465 -16.15225 -16.10007 -15.81889 -15.50374 -15.08889 -14.91706 -14.58194 -14.35330 -14.14171 -14.12325 -13.51213 -13.44236 -13.25007 -12.95537 -12.87324 -12.77571 -12.42096 -12.19676 -12.15570 -11.96675 -11.87845 -11.82688 -11.57101 -11.06297 -10.65908 -10.50054 -10.13263 -9.96510 -9.28858 -4.90196 0.18513 0.38033 1.29403 1.46687 1.61634 1.67921 1.96260 2.42287 2.64470 2.94838 3.40123 3.41459 3.51335 3.54500 3.64090 3.77058 3.82449 3.86283 3.88405 3.97221 4.08312 4.22140 4.26483 4.29265 4.39061 4.50169 4.53126 4.53929 4.62526 4.65860 4.70266 4.70457 4.75599 4.84025 4.92658 4.94216 4.96897 5.02597 5.24760 5.36783 5.42814 5.44549 5.69192 6.23391 6.31488 6.43275 6.46839 7.10976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.397 6.397 3 C 0.059 3.941 4 H 0.102 0.898 5 C -0.167 4.167 6 C 0.123 3.877 7 H 0.106 0.894 8 N -0.704 5.704 9 C 0.522 3.478 10 O -0.582 6.582 11 C -0.134 4.134 12 C 0.074 3.926 13 O -0.324 6.324 14 C 0.116 3.884 15 C -0.140 4.140 16 C -0.081 4.081 17 C -0.087 4.087 18 O -0.548 6.548 19 Si 0.776 3.224 20 C -0.158 4.158 21 C -0.075 4.075 22 C -0.210 4.210 23 C -0.134 4.134 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.419 0.581 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.386 0.614 37 H -0.302 1.302 38 H -0.280 1.280 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 -0.978 -0.248 3.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.316 6.316 3 C 0.001 3.999 4 H 0.120 0.880 5 C -0.206 4.206 6 C 0.017 3.983 7 H 0.124 0.876 8 N -0.356 5.356 9 C 0.309 3.691 10 O -0.463 6.463 11 C -0.173 4.173 12 C -0.001 4.001 13 O -0.239 6.239 14 C 0.071 3.929 15 C -0.159 4.159 16 C -0.082 4.082 17 C -0.195 4.195 18 O -0.356 6.356 19 Si 0.681 3.319 20 C -0.176 4.176 21 C -0.093 4.093 22 C -0.229 4.229 23 C -0.172 4.172 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.257 0.743 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.235 0.765 37 H -0.230 1.230 38 H -0.207 1.207 39 H 0.164 0.836 40 H 0.170 0.830 41 H 0.154 0.846 42 H 0.109 0.891 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.914 -0.493 0.157 2.960 hybrid contribution -0.073 -0.167 -1.295 1.308 sum -2.987 -0.660 -1.138 3.264 Atomic orbital electron populations 1.22959 0.79830 1.03720 1.00779 1.87901 1.21182 1.27810 1.94673 1.23614 0.94327 0.85569 0.96404 0.87979 1.24015 0.97583 1.01113 0.97895 1.22157 0.80614 1.00046 0.95468 0.87603 1.45802 1.14648 1.15642 1.59489 1.20646 0.87967 0.83754 0.76688 1.90729 1.71908 1.26089 1.57529 1.21444 0.92262 0.99240 1.04364 1.22437 0.80187 0.98325 0.99158 1.85956 1.28859 1.36343 1.72701 1.19154 0.92490 0.87210 0.94039 1.20341 0.92305 1.00591 1.02687 1.20155 0.96458 0.93398 0.98159 1.25348 0.86716 1.14318 0.93135 1.86576 1.65182 1.48102 1.35775 0.93861 0.80614 0.72745 0.84651 1.21205 0.96075 0.97209 1.03087 1.21241 0.94214 0.99044 0.94825 1.21553 1.01990 0.93409 1.05945 1.23559 0.94983 1.00286 0.98345 0.92926 0.88894 0.93463 0.88976 0.91184 0.74334 0.85569 0.85594 0.91552 0.91687 0.85396 0.85713 0.76453 1.23047 1.20678 0.83599 0.82998 0.84562 0.89092 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.40 -0.79 10.72 -148.98 -1.60 -2.38 16 3 C 0.06 -0.10 4.31 31.18 0.13 0.03 16 4 H 0.10 -0.41 7.87 -2.39 -0.02 -0.43 16 5 C -0.17 0.18 7.73 31.18 0.24 0.43 16 6 C 0.12 -0.22 4.21 45.52 0.19 -0.03 16 7 H 0.11 0.13 7.50 -2.39 -0.02 0.11 16 8 N -0.70 2.46 5.36 -440.04 -2.36 0.10 16 9 C 0.52 0.52 7.83 87.66 0.69 1.20 16 10 O -0.58 -5.61 15.60 -3.03 -0.05 -5.66 16 11 C -0.13 0.47 6.07 29.85 0.18 0.65 16 12 C 0.07 0.12 4.03 71.98 0.29 0.41 16 13 O -0.32 -1.57 10.14 -92.48 -0.94 -2.51 16 14 C 0.12 0.65 6.69 22.51 0.15 0.80 16 15 C -0.14 -0.72 9.62 22.37 0.22 -0.50 16 16 C -0.08 -0.18 5.35 -19.88 -0.11 -0.28 16 17 C -0.09 -0.06 2.80 71.24 0.20 0.14 16 18 O -0.55 -2.17 12.83 -148.98 -1.91 -4.08 16 19 Si 0.78 -1.28 29.88 68.60 2.05 0.77 16 20 C -0.16 -0.02 8.67 22.28 0.19 0.18 16 21 C -0.08 -0.03 10.04 22.25 0.22 0.19 16 22 C -0.21 -0.68 9.04 22.36 0.20 -0.48 16 23 C -0.13 0.55 7.66 31.12 0.24 0.79 16 24 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.05 -0.16 8.14 -2.38 -0.02 -0.18 16 27 H 0.09 -0.04 8.14 -2.38 -0.02 -0.06 16 28 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.42 -3.82 8.71 -92.70 -0.81 -4.62 16 30 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 31 H 0.13 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H 0.07 0.18 7.63 -2.39 -0.02 0.16 16 33 H 0.06 0.18 7.61 -2.39 -0.02 0.16 16 34 H 0.13 0.69 8.06 -2.91 -0.02 0.66 16 35 H 0.13 -0.10 7.96 -2.39 -0.02 -0.12 16 36 H 0.39 -0.66 8.70 -74.06 -0.64 -1.30 16 37 H -0.30 -1.79 7.11 99.48 0.71 -1.08 16 38 H -0.28 -0.46 7.01 99.48 0.70 0.23 16 39 H 0.15 -0.59 4.84 -2.91 -0.01 -0.60 16 40 H 0.15 -0.67 8.06 -2.91 -0.02 -0.70 16 41 H 0.14 0.24 6.30 -2.91 -0.02 0.22 16 42 H 0.09 -0.50 8.14 -2.39 -0.02 -0.51 16 43 H 0.10 -0.51 8.11 -2.39 -0.02 -0.53 16 Total: 0.00 -19.18 360.01 -0.93 -20.10 By element: Atomic # 1 Polarization: -10.63 SS G_CDS: -0.39 Total: -11.02 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 4.27 Total: 4.68 kcal Atomic # 7 Polarization: 2.46 SS G_CDS: -2.36 Total: 0.10 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -4.49 Total: -14.63 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: 2.05 Total: 0.77 kcal Total: -19.18 -0.93 -20.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_4549614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.977 kcal (2) G-P(sol) polarization free energy of solvation -19.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds