Wall clock time and date at job start Mon Mar 8 2021 04:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 114.00108 * 2 1 4 4 H 1.08999 * 112.84453 * 18.80157 * 3 2 1 5 5 C 1.53773 * 113.61375 * 149.99769 * 3 2 1 6 6 C 1.53783 * 87.08265 * 139.97936 * 5 3 2 7 7 H 1.09004 * 113.61409 * 89.19288 * 6 5 3 8 8 N 1.46500 * 113.61798 * 220.01901 * 6 5 3 9 9 C 1.34768 * 120.00015 * 203.46970 * 8 6 5 10 10 O 1.21283 * 120.00373 * 359.97438 * 9 8 6 11 11 C 1.50703 * 120.00287 * 179.97438 * 9 8 6 12 12 C 1.52998 * 109.47564 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47242 * 180.02562 * 12 11 9 14 14 O 1.42901 * 109.47046 * 179.97438 * 13 12 11 15 15 C 1.35905 * 116.99604 * 179.97438 * 14 13 12 16 16 C 1.38711 * 120.05327 * 179.97438 * 15 14 13 17 17 C 1.38159 * 119.94573 * 180.02562 * 16 15 14 18 18 C 1.50703 * 119.97368 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47109 * 299.99887 * 18 17 16 20 20 Si 1.86303 * 109.47150 * 180.02562 * 18 17 16 21 21 C 1.38246 * 120.05555 * 0.02562 * 17 16 15 22 22 C 1.38291 * 120.11190 * 0.02562 * 21 17 16 23 23 C 1.38130 * 120.05012 * 359.67962 * 22 21 17 24 24 C 1.53785 * 87.17056 * 334.61225 * 6 5 3 25 25 H 1.09005 * 109.46979 * 60.00034 * 1 2 3 26 26 H 1.08997 * 109.47240 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47349 * 300.00624 * 1 2 3 28 28 H 1.09002 * 113.61601 * 25.43551 * 5 3 2 29 29 H 1.08999 * 113.61775 * 254.52945 * 5 3 2 30 30 H 0.97004 * 119.99762 * 23.47105 * 8 6 5 31 31 H 1.09004 * 109.46598 * 60.00015 * 11 9 8 32 32 H 1.09004 * 109.47086 * 300.00583 * 11 9 8 33 33 H 1.08998 * 109.46945 * 59.99676 * 12 11 9 34 34 H 1.09007 * 109.46896 * 299.99923 * 12 11 9 35 35 H 1.08996 * 109.47090 * 59.99784 * 13 12 11 36 36 H 1.08999 * 109.47084 * 299.99957 * 13 12 11 37 37 H 1.08006 * 120.02510 * 359.97438 * 16 15 14 38 38 H 1.09000 * 109.47298 * 60.00148 * 18 17 16 39 39 H 0.96701 * 114.00329 * 179.97438 * 19 18 17 40 40 H 1.48504 * 109.99654 * 298.67967 * 20 18 17 41 41 H 1.48497 * 110.00004 * 59.99897 * 20 18 17 42 42 H 1.08001 * 119.94258 * 179.97438 * 21 17 16 43 43 H 1.07997 * 119.97183 * 179.97438 * 22 21 17 44 44 H 1.07997 * 120.02288 * 180.32190 * 23 22 21 45 45 H 1.08998 * 113.61616 * 139.94147 * 24 6 5 46 46 H 1.09009 * 113.61154 * 270.84153 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3137 2.0789 0.3237 5 6 3.3755 1.3719 0.7045 6 6 3.8228 2.3181 -0.4222 7 1 3.6235 3.3694 -0.2144 8 7 5.1935 2.0785 -0.8803 9 6 5.8843 3.0655 -1.4845 10 8 5.3710 4.1519 -1.6495 11 6 7.2946 2.8193 -1.9553 12 6 7.8460 4.0916 -2.6018 13 6 9.2775 3.8414 -3.0803 14 8 9.7923 5.0296 -3.6846 15 6 11.0622 4.9767 -4.1657 16 6 11.6250 6.0936 -4.7654 17 6 12.9160 6.0372 -5.2541 18 6 13.5283 7.2506 -5.9054 19 8 12.7456 7.6283 -7.0397 20 14 15.2635 6.8519 -6.4539 21 6 13.6467 4.8686 -5.1463 22 6 13.0876 3.7533 -4.5497 23 6 11.7994 3.8065 -4.0541 24 6 2.7533 1.6511 -1.3033 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.9088 0.4213 0.7138 29 1 3.3384 1.8471 1.6848 30 1 5.6040 1.2095 -0.7487 31 1 7.2977 2.0102 -2.6858 32 1 7.9185 2.5435 -1.1051 33 1 7.8427 4.9009 -1.8717 34 1 7.2219 4.3668 -3.4521 35 1 9.2803 3.0322 -3.8105 36 1 9.9017 3.5659 -2.2303 37 1 11.0541 7.0065 -4.8510 38 1 13.5528 8.0731 -5.1906 39 1 13.0817 8.4043 -7.5087 40 1 16.0964 6.4879 -5.2795 41 1 15.2433 5.7320 -7.4289 42 1 14.6557 4.8264 -5.5293 43 1 13.6603 2.8414 -4.4671 44 1 11.3650 2.9369 -3.5837 45 1 2.2146 2.3513 -1.9417 46 1 3.1162 0.7769 -1.8440 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_4549616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:11:02 Heat of formation + Delta-G solvation = -101.541684 kcal Electronic energy + Delta-G solvation = -25629.082492 eV Core-core repulsion = 21679.584881 eV Total energy + Delta-G solvation = -3949.497612 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.42890 -41.23190 -39.92489 -39.16493 -37.40007 -37.29397 -34.95374 -34.12939 -32.67669 -31.38047 -28.67159 -27.70927 -26.87978 -26.77648 -25.02874 -23.81838 -23.24660 -21.83550 -21.52212 -20.90719 -18.98220 -18.43126 -18.27952 -18.12952 -17.52196 -17.49567 -17.05693 -16.87437 -16.48452 -16.12897 -16.00081 -15.86319 -15.41518 -15.15853 -14.77045 -14.69559 -14.63474 -14.36099 -14.05042 -13.65418 -13.51277 -13.42144 -13.28617 -13.22373 -12.78421 -12.62885 -12.47871 -12.32345 -12.19467 -12.15789 -12.10312 -11.88595 -11.77877 -11.66079 -10.96607 -10.51373 -10.43409 -10.10024 -9.96557 -9.38159 -4.93642 0.08264 0.24377 1.27656 1.55740 1.64909 1.86233 1.97080 2.28753 2.52333 2.92042 3.37329 3.39789 3.50927 3.60003 3.70516 3.76995 3.79499 3.83182 3.84814 3.85430 3.98127 4.10477 4.16077 4.24995 4.31179 4.34756 4.37827 4.41153 4.49278 4.51716 4.58912 4.61435 4.69004 4.70159 4.82571 4.86095 4.91318 4.93389 4.97954 5.03284 5.08239 5.17456 5.21679 5.30310 5.48066 5.58410 6.21785 6.32467 6.50281 6.87839 7.20582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.059 3.941 4 H 0.101 0.899 5 C -0.132 4.132 6 C 0.121 3.879 7 H 0.101 0.899 8 N -0.707 5.707 9 C 0.510 3.490 10 O -0.589 6.589 11 C -0.128 4.128 12 C -0.101 4.101 13 C 0.056 3.944 14 O -0.333 6.333 15 C 0.123 3.877 16 C -0.146 4.146 17 C -0.053 4.053 18 C -0.088 4.088 19 O -0.565 6.565 20 Si 0.787 3.213 21 C -0.184 4.184 22 C -0.073 4.073 23 C -0.206 4.206 24 C -0.167 4.167 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.419 0.581 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.404 0.596 40 H -0.285 1.285 41 H -0.296 1.296 42 H 0.121 0.879 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.066 0.934 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.228 -3.166 2.069 4.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.001 3.999 4 H 0.119 0.881 5 C -0.170 4.170 6 C 0.015 3.985 7 H 0.119 0.881 8 N -0.359 5.359 9 C 0.298 3.702 10 O -0.469 6.469 11 C -0.167 4.167 12 C -0.139 4.139 13 C -0.019 4.019 14 O -0.247 6.247 15 C 0.077 3.923 16 C -0.165 4.165 17 C -0.053 4.053 18 C -0.197 4.197 19 O -0.375 6.375 20 Si 0.692 3.308 21 C -0.202 4.202 22 C -0.091 4.091 23 C -0.224 4.224 24 C -0.207 4.207 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.071 0.929 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.257 0.743 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.145 0.855 38 H 0.110 0.890 39 H 0.255 0.745 40 H -0.212 1.212 41 H -0.223 1.223 42 H 0.138 0.862 43 H 0.173 0.827 44 H 0.177 0.823 45 H 0.085 0.915 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.089 -3.514 2.120 4.605 hybrid contribution -0.787 -0.288 0.309 0.893 sum 1.302 -3.802 2.429 4.696 Atomic orbital electron populations 1.22961 0.79838 1.03751 1.00749 1.87898 1.21173 1.27746 1.94674 1.23609 0.94372 0.85550 0.96392 0.88135 1.23545 0.94887 1.00276 0.98263 1.22112 0.81080 0.99795 0.95495 0.88110 1.45849 1.14508 1.15753 1.59767 1.21209 0.88980 0.83524 0.76472 1.90730 1.72121 1.26560 1.57494 1.21543 0.91627 0.99398 1.04174 1.21148 0.93425 0.98290 1.01042 1.23039 0.94891 0.85769 0.98172 1.86062 1.26262 1.39568 1.72844 1.19189 0.84261 0.94661 0.94146 1.20363 0.95516 0.98376 1.02264 1.19513 0.93807 0.94943 0.97010 1.25011 1.06404 0.97038 0.91257 1.86448 1.55254 1.53340 1.42491 0.94311 0.73156 0.84415 0.78905 1.20994 1.00166 0.94026 1.05006 1.21223 0.94695 0.98520 0.94690 1.21586 0.96212 0.98170 1.06433 1.24016 0.97676 1.01068 0.97898 0.93550 0.88797 0.92932 0.87735 0.89150 0.74345 0.85556 0.85261 0.91886 0.92164 0.89954 0.89624 0.85454 0.88965 0.74479 1.21179 1.22342 0.86157 0.82694 0.82283 0.91514 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.40 -1.00 10.72 -148.98 -1.60 -2.59 16 3 C 0.06 -0.05 4.31 31.18 0.13 0.08 16 4 H 0.10 -0.29 7.87 -2.39 -0.02 -0.31 16 5 C -0.13 0.45 7.66 31.12 0.24 0.69 16 6 C 0.12 -0.07 4.21 45.52 0.19 0.13 16 7 H 0.10 0.34 7.50 -2.38 -0.02 0.32 16 8 N -0.71 2.05 5.36 -440.03 -2.36 -0.31 16 9 C 0.51 1.01 7.83 87.66 0.69 1.69 16 10 O -0.59 -7.46 15.60 -3.04 -0.05 -7.51 16 11 C -0.13 0.73 5.70 29.85 0.17 0.90 16 12 C -0.10 -0.08 4.87 30.59 0.15 0.07 16 13 C 0.06 -0.06 4.74 71.98 0.34 0.28 16 14 O -0.33 -2.52 10.14 -92.48 -0.94 -3.46 16 15 C 0.12 0.96 6.69 22.50 0.15 1.11 16 16 C -0.15 -1.41 9.55 22.36 0.21 -1.20 16 17 C -0.05 -0.42 5.42 -19.88 -0.11 -0.52 16 18 C -0.09 -0.19 2.81 71.24 0.20 0.01 16 19 O -0.57 -1.52 12.74 -148.98 -1.90 -3.42 16 20 Si 0.79 -0.74 29.79 68.60 2.04 1.30 16 21 C -0.18 -1.23 8.67 22.28 0.19 -1.03 16 22 C -0.07 -0.24 10.04 22.26 0.22 -0.02 16 23 C -0.21 -0.63 9.04 22.37 0.20 -0.43 16 24 C -0.17 -0.02 7.73 31.18 0.24 0.22 16 25 H 0.05 -0.12 8.14 -2.38 -0.02 -0.14 16 26 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 27 H 0.05 -0.20 8.14 -2.38 -0.02 -0.22 16 28 H 0.10 -0.49 8.11 -2.39 -0.02 -0.51 16 29 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.42 -3.92 8.71 -92.71 -0.81 -4.73 16 31 H 0.13 -1.37 8.14 -2.39 -0.02 -1.39 16 32 H 0.13 -1.47 8.14 -2.38 -0.02 -1.49 16 33 H 0.06 0.31 8.10 -2.39 -0.02 0.29 16 34 H 0.06 0.33 8.10 -2.38 -0.02 0.31 16 35 H 0.08 -0.38 7.67 -2.39 -0.02 -0.40 16 36 H 0.09 -0.45 7.65 -2.39 -0.02 -0.47 16 37 H 0.13 1.27 8.06 -2.91 -0.02 1.24 16 38 H 0.09 -0.14 7.96 -2.39 -0.02 -0.16 16 39 H 0.40 -3.41 8.74 -74.06 -0.65 -4.06 16 40 H -0.28 -1.07 7.11 99.48 0.71 -0.36 16 41 H -0.30 -1.89 7.11 99.48 0.71 -1.18 16 42 H 0.12 0.64 4.87 -2.91 -0.01 0.62 16 43 H 0.16 -0.40 8.06 -2.91 -0.02 -0.42 16 44 H 0.16 -0.56 6.30 -2.91 -0.02 -0.58 16 45 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 46 H 0.09 0.03 8.14 -2.38 -0.02 0.01 16 Total: 0.00 -26.35 381.52 -0.76 -27.12 By element: Atomic # 1 Polarization: -13.87 SS G_CDS: -0.43 Total: -14.30 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 4.46 Total: 3.17 kcal Atomic # 7 Polarization: 2.05 SS G_CDS: -2.36 Total: -0.31 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -4.48 Total: -16.98 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: 2.04 Total: 1.30 kcal Total: -26.35 -0.76 -27.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_4549616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.423 kcal (2) G-P(sol) polarization free energy of solvation -26.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds