Wall clock time and date at job start Mon Mar 8 2021 04:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 113.99939 * 2 1 4 4 H 1.08999 * 112.84751 * 18.80700 * 3 2 1 5 5 C 1.53778 * 113.61186 * 150.00463 * 3 2 1 6 6 C 1.53780 * 87.08242 * 140.07032 * 5 3 2 7 7 H 1.08992 * 113.62213 * 89.19540 * 6 5 3 8 8 N 1.46506 * 113.61223 * 220.02103 * 6 5 3 9 9 C 1.34780 * 119.99658 * 203.46650 * 8 6 5 10 10 O 1.21549 * 119.99822 * 359.97438 * 9 8 6 11 11 C 1.47852 * 119.99666 * 179.97438 * 9 8 6 12 12 C 1.39552 * 120.14319 * 180.25467 * 11 9 8 13 13 C 1.37977 * 119.84962 * 180.24817 * 12 11 9 14 14 C 1.50701 * 119.92405 * 179.78934 * 13 12 11 15 15 O 1.42901 * 109.47504 * 269.72768 * 14 13 12 16 16 C 1.35906 * 117.00155 * 180.02562 * 15 14 13 17 17 C 1.38709 * 120.05198 * 180.02562 * 16 15 14 18 18 C 1.38167 * 119.93745 * 179.97438 * 17 16 15 19 19 C 1.50702 * 119.96727 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.47097 * 299.99805 * 19 18 17 21 21 Si 1.86303 * 109.47007 * 180.02562 * 19 18 17 22 22 C 1.38237 * 120.05858 * 0.02562 * 18 17 16 23 23 C 1.38289 * 120.11494 * 359.74537 * 22 18 17 24 24 C 1.38125 * 120.05202 * 0.50894 * 23 22 18 25 25 C 1.38328 * 120.14834 * 359.51849 * 13 12 11 26 26 C 1.38382 * 120.29012 * 0.22787 * 25 13 12 27 27 C 1.37939 * 120.14732 * 0.02562 * 26 25 13 28 28 C 1.53786 * 87.17081 * 334.60460 * 6 5 3 29 29 H 1.08999 * 109.47756 * 59.99577 * 1 2 3 30 30 H 1.09006 * 109.47105 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47214 * 299.99861 * 1 2 3 32 32 H 1.08997 * 113.61951 * 25.51303 * 5 3 2 33 33 H 1.09011 * 113.61035 * 254.60867 * 5 3 2 34 34 H 0.96997 * 120.00125 * 23.46413 * 8 6 5 35 35 H 1.08002 * 120.07654 * 0.02562 * 12 11 9 36 36 H 1.09003 * 109.47211 * 149.72375 * 14 13 12 37 37 H 1.09006 * 109.46922 * 29.72783 * 14 13 12 38 38 H 1.07992 * 120.02910 * 359.95530 * 17 16 15 39 39 H 1.08993 * 109.47086 * 60.00571 * 19 18 17 40 40 H 0.96693 * 114.00499 * 300.00129 * 20 19 18 41 41 H 1.48501 * 110.00122 * 179.97438 * 21 19 18 42 42 H 1.48502 * 109.99930 * 301.32265 * 21 19 18 43 43 H 1.08001 * 119.94627 * 179.97438 * 22 18 17 44 44 H 1.07995 * 119.98087 * 180.27524 * 23 22 18 45 45 H 1.08002 * 120.03152 * 179.77429 * 24 23 22 46 46 H 1.08002 * 119.85631 * 180.25338 * 25 13 12 47 47 H 1.08003 * 119.92678 * 180.02562 * 26 25 13 48 48 H 1.08001 * 120.07095 * 180.02562 * 27 26 25 49 49 H 1.08996 * 113.61549 * 139.94210 * 28 6 5 50 50 H 1.08997 * 113.61837 * 270.84517 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0788 0.3238 5 6 3.3755 1.3718 0.7044 6 6 3.8219 2.3200 -0.4210 7 1 3.6220 3.3708 -0.2117 8 7 5.1928 2.0820 -0.8796 9 6 5.8828 3.0703 -1.4826 10 8 5.3675 4.1589 -1.6463 11 6 7.2665 2.8303 -1.9450 12 6 7.9856 3.8530 -2.5649 13 6 9.2747 3.6209 -2.9986 14 6 10.0511 4.7227 -3.6726 15 8 9.8272 4.6694 -5.0829 16 6 10.4598 5.6011 -5.8437 17 6 10.2869 5.6079 -7.2200 18 6 10.9307 6.5566 -7.9911 19 6 10.7428 6.5650 -9.4864 20 8 11.1861 5.3196 -10.0291 21 14 11.7370 7.9544 -10.2293 22 6 11.7469 7.4979 -7.3923 23 6 11.9172 7.4962 -6.0199 24 6 11.2800 6.5467 -5.2451 25 6 9.8580 2.3806 -2.8112 26 6 9.1522 1.3638 -2.1924 27 6 7.8609 1.5810 -1.7588 28 6 2.7529 1.6534 -1.3029 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9094 0.4216 0.7124 33 1 3.3381 1.8458 1.6854 34 1 5.6039 1.2131 -0.7493 35 1 7.5328 4.8231 -2.7081 36 1 11.1142 4.5955 -3.4683 37 1 9.7202 5.6877 -3.2884 38 1 9.6499 4.8723 -7.6883 39 1 9.6877 6.7079 -9.7192 40 1 12.1182 5.1262 -9.8598 41 1 11.5608 7.9731 -11.7037 42 1 11.3080 9.2524 -9.6494 43 1 12.2496 8.2383 -7.9969 44 1 12.5518 8.2353 -5.5539 45 1 11.4161 6.5434 -4.1737 46 1 10.8687 2.2053 -3.1489 47 1 9.6135 0.3978 -2.0487 48 1 7.3114 0.7867 -1.2757 49 1 2.2136 2.3541 -1.9403 50 1 3.1162 0.7803 -1.8449 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_4549630.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:11:06 Heat of formation + Delta-G solvation = -59.310621 kcal Electronic energy + Delta-G solvation = -31448.517439 eV Core-core repulsion = 26987.946542 eV Total energy + Delta-G solvation = -4460.570897 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.68616 -41.29989 -40.40953 -39.52241 -38.83930 -37.31802 -37.25346 -34.65993 -33.22102 -32.46111 -32.16182 -31.04973 -27.96141 -27.69184 -26.82633 -26.63735 -25.97976 -23.98977 -23.66589 -23.16647 -22.18110 -21.47101 -20.97924 -19.22896 -18.85665 -18.31838 -17.83907 -17.33599 -17.21166 -17.16793 -16.93606 -16.82938 -16.44055 -16.31155 -16.15055 -15.88790 -15.64768 -15.57018 -15.22453 -14.98831 -14.85326 -14.71550 -14.47217 -14.20581 -13.97117 -13.65052 -13.52807 -13.46977 -13.39705 -12.92641 -12.87813 -12.73046 -12.59309 -12.27164 -12.18870 -12.17009 -12.03202 -11.94399 -11.88789 -11.65423 -11.14178 -10.52521 -10.52132 -10.31055 -10.05869 -9.97499 -9.92874 -9.27180 -4.99840 -0.30084 0.12785 0.19712 0.38932 1.29100 1.62271 1.64640 1.92940 1.95294 2.22920 2.66728 2.84090 2.89117 3.35693 3.45045 3.49012 3.55769 3.56294 3.66552 3.74831 3.75776 3.83651 3.84161 3.97338 4.06720 4.08250 4.16551 4.22135 4.23868 4.27358 4.39242 4.45918 4.49805 4.51312 4.52380 4.64177 4.66797 4.67875 4.70289 4.82677 4.86621 4.90024 4.91085 4.97030 4.97691 5.15432 5.24668 5.28075 5.36004 5.37239 5.39246 5.43615 5.70601 5.76060 6.21638 6.35819 6.37906 6.74627 7.03729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.062 3.938 4 H 0.103 0.897 5 C -0.131 4.131 6 C 0.120 3.880 7 H 0.106 0.894 8 N -0.699 5.699 9 C 0.558 3.442 10 O -0.582 6.582 11 C -0.157 4.157 12 C -0.055 4.055 13 C -0.114 4.114 14 C 0.099 3.901 15 O -0.329 6.329 16 C 0.116 3.884 17 C -0.148 4.148 18 C -0.084 4.084 19 C -0.083 4.083 20 O -0.556 6.556 21 Si 0.793 3.207 22 C -0.159 4.159 23 C -0.072 4.072 24 C -0.208 4.208 25 C -0.067 4.067 26 C -0.125 4.125 27 C -0.069 4.069 28 C -0.169 4.169 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.416 0.584 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.396 0.604 41 H -0.299 1.299 42 H -0.283 1.283 43 H 0.148 0.852 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.152 0.848 47 H 0.165 0.835 48 H 0.157 0.843 49 H 0.068 0.932 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 -2.974 4.755 7.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.004 3.996 4 H 0.121 0.879 5 C -0.169 4.169 6 C 0.015 3.985 7 H 0.124 0.876 8 N -0.351 5.351 9 C 0.347 3.653 10 O -0.463 6.463 11 C -0.160 4.160 12 C -0.074 4.074 13 C -0.114 4.114 14 C 0.025 3.975 15 O -0.243 6.243 16 C 0.071 3.929 17 C -0.167 4.167 18 C -0.085 4.085 19 C -0.192 4.192 20 O -0.364 6.364 21 Si 0.698 3.302 22 C -0.176 4.176 23 C -0.090 4.090 24 C -0.226 4.226 25 C -0.085 4.085 26 C -0.143 4.143 27 C -0.087 4.087 28 C -0.208 4.208 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.255 0.745 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.246 0.754 41 H -0.228 1.228 42 H -0.210 1.210 43 H 0.166 0.834 44 H 0.176 0.824 45 H 0.167 0.833 46 H 0.170 0.830 47 H 0.182 0.818 48 H 0.175 0.825 49 H 0.086 0.914 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.363 -1.858 3.971 6.185 hybrid contribution -1.113 -0.159 0.204 1.143 sum 3.250 -2.017 4.175 5.662 Atomic orbital electron populations 1.22964 0.79804 1.03766 1.00776 1.87898 1.21198 1.27663 1.94642 1.23577 0.94343 0.85653 0.96072 0.87874 1.23556 0.94872 1.00172 0.98257 1.22218 0.80193 1.00258 0.95805 0.87648 1.45722 1.14780 1.15219 1.59329 1.18601 0.86017 0.83805 0.76905 1.90762 1.71440 1.26174 1.57888 1.19886 0.93953 0.96558 1.05631 1.21168 0.93254 0.98836 0.94139 1.19529 0.94451 0.96172 1.01253 1.21749 1.00597 0.97583 0.77557 1.86133 1.67233 1.51215 1.19749 1.19189 0.93112 0.89617 0.90975 1.20292 1.03926 1.01741 0.90753 1.20221 0.96858 0.95333 0.96066 1.25371 1.05307 0.97056 0.91445 1.86467 1.33515 1.38078 1.78388 0.93529 0.88083 0.73194 0.75395 1.21185 1.00679 0.99886 0.95901 1.21297 0.97319 0.97197 0.93175 1.21585 1.01418 0.97796 1.01809 1.21662 1.01139 0.91203 0.94539 1.21532 0.94067 1.00680 0.97990 1.21695 0.95736 0.94984 0.96334 1.24036 0.97609 1.01082 0.98078 0.93593 0.88796 0.92827 0.87662 0.88760 0.74543 0.86369 0.88367 0.90437 0.86542 0.88083 0.75423 1.22766 1.21002 0.83438 0.82418 0.83337 0.83013 0.81755 0.82505 0.91354 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.40 -1.07 10.72 -148.98 -1.60 -2.66 16 3 C 0.06 -0.03 4.31 31.18 0.13 0.10 16 4 H 0.10 -0.30 7.87 -2.39 -0.02 -0.32 16 5 C -0.13 0.39 7.66 31.12 0.24 0.63 16 6 C 0.12 0.10 4.21 45.52 0.19 0.29 16 7 H 0.11 0.43 7.50 -2.39 -0.02 0.41 16 8 N -0.70 -0.38 5.31 -442.89 -2.35 -2.73 16 9 C 0.56 4.15 7.77 86.79 0.67 4.82 16 10 O -0.58 -9.39 15.97 -3.87 -0.06 -9.46 16 11 C -0.16 -0.64 5.87 -20.09 -0.12 -0.76 16 12 C -0.05 -0.33 9.24 22.53 0.21 -0.12 16 13 C -0.11 -0.23 5.50 -19.90 -0.11 -0.33 16 14 C 0.10 0.05 4.86 71.24 0.35 0.39 16 15 O -0.33 -2.17 10.12 -92.49 -0.94 -3.10 16 16 C 0.12 0.64 6.69 22.51 0.15 0.79 16 17 C -0.15 -1.00 9.55 22.37 0.21 -0.78 16 18 C -0.08 -0.25 5.39 -19.88 -0.11 -0.36 16 19 C -0.08 -0.17 2.82 71.24 0.20 0.03 16 20 O -0.56 -1.55 12.77 -148.98 -1.90 -3.45 16 21 Si 0.79 -1.15 29.78 68.60 2.04 0.89 16 22 C -0.16 0.10 8.67 22.28 0.19 0.29 16 23 C -0.07 0.12 10.04 22.25 0.22 0.34 16 24 C -0.21 -0.13 9.04 22.37 0.20 0.07 16 25 C -0.07 0.15 9.69 22.33 0.22 0.37 16 26 C -0.13 0.57 10.03 22.23 0.22 0.79 16 27 C -0.07 0.20 9.54 22.53 0.21 0.41 16 28 C -0.17 -0.20 7.73 31.18 0.24 0.04 16 29 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.09 -0.32 8.14 -2.38 -0.02 -0.34 16 31 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.11 -0.46 8.11 -2.39 -0.02 -0.47 16 33 H 0.09 -0.45 8.14 -2.38 -0.02 -0.47 16 34 H 0.42 -2.39 6.75 -92.71 -0.63 -3.02 16 35 H 0.12 1.06 7.65 -2.91 -0.02 1.04 16 36 H 0.10 -0.45 7.60 -2.39 -0.02 -0.47 16 37 H 0.08 -0.05 7.61 -2.38 -0.02 -0.07 16 38 H 0.12 1.05 8.06 -2.91 -0.02 1.02 16 39 H 0.10 0.42 7.96 -2.39 -0.02 0.40 16 40 H 0.40 -2.31 8.70 -74.06 -0.64 -2.95 16 41 H -0.30 -1.79 7.11 99.48 0.71 -1.08 16 42 H -0.28 -0.78 7.11 99.48 0.71 -0.07 16 43 H 0.15 -0.77 4.87 -2.91 -0.01 -0.78 16 44 H 0.16 -1.16 8.06 -2.91 -0.02 -1.19 16 45 H 0.15 -0.58 6.30 -2.91 -0.02 -0.60 16 46 H 0.15 -1.01 8.06 -2.91 -0.02 -1.04 16 47 H 0.16 -1.71 8.06 -2.91 -0.02 -1.74 16 48 H 0.16 -1.49 6.41 -2.91 -0.02 -1.51 16 49 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 50 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 Total: 0.00 -25.30 416.76 -0.29 -25.58 By element: Atomic # 1 Polarization: -13.03 SS G_CDS: -0.25 Total: -13.28 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 4.77 Total: 8.21 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -2.35 Total: -2.73 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -4.50 Total: -18.67 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: 2.04 Total: 0.89 kcal Total: -25.30 -0.29 -25.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_4549630.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.726 kcal (2) G-P(sol) polarization free energy of solvation -25.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds