Wall clock time and date at job start Mon Mar 8 2021 04:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00245 * 2 1 4 4 H 1.09004 * 112.84811 * 18.80438 * 3 2 1 5 5 C 1.53774 * 113.61914 * 149.99814 * 3 2 1 6 6 C 1.53785 * 87.08281 * 140.06839 * 5 3 2 7 7 H 1.09005 * 113.61402 * 89.20028 * 6 5 3 8 8 N 1.46495 * 113.61420 * 220.02111 * 6 5 3 9 9 C 1.34777 * 119.99925 * 203.46670 * 8 6 5 10 10 O 1.21695 * 120.00243 * 0.02562 * 9 8 6 11 11 C 1.46659 * 120.00036 * 180.02562 * 9 8 6 12 12 C 1.36544 * 125.99072 * 180.02562 * 11 9 8 13 13 C 1.50706 * 126.64371 * 0.02562 * 12 11 9 14 14 C 1.40363 * 106.71099 * 180.02562 * 12 11 9 15 15 C 1.35134 * 107.11248 * 0.02562 * 14 12 11 16 16 C 1.50705 * 125.61254 * 180.02562 * 15 14 12 17 17 O 1.42900 * 109.47259 * 90.00070 * 16 15 14 18 18 C 1.35899 * 116.99982 * 179.97438 * 17 16 15 19 19 C 1.38729 * 120.05294 * 180.02562 * 18 17 16 20 20 C 1.38146 * 119.94031 * 179.97438 * 19 18 17 21 21 C 1.38263 * 120.05914 * 359.97438 * 20 19 18 22 22 C 1.50697 * 119.94583 * 179.97438 * 21 20 19 23 23 O 1.42895 * 109.47590 * 300.00259 * 22 21 20 24 24 Si 1.86300 * 109.47007 * 179.97438 * 22 21 20 25 25 C 1.38271 * 120.10967 * 0.27730 * 21 20 19 26 26 C 1.38148 * 120.05274 * 359.44682 * 25 21 20 27 27 O 1.33926 * 108.77016 * 0.26303 * 15 14 12 28 28 C 1.53785 * 87.17249 * 334.61100 * 6 5 3 29 29 H 1.09003 * 109.47451 * 299.99832 * 1 2 3 30 30 H 1.08991 * 109.47350 * 60.00311 * 1 2 3 31 31 H 1.09002 * 109.46883 * 180.02562 * 1 2 3 32 32 H 1.09003 * 113.61581 * 25.51963 * 5 3 2 33 33 H 1.08998 * 113.69557 * 254.62402 * 5 3 2 34 34 H 0.97003 * 120.00134 * 23.46793 * 8 6 5 35 35 H 1.08996 * 109.47296 * 270.00273 * 13 12 11 36 36 H 1.09007 * 109.46654 * 29.99905 * 13 12 11 37 37 H 1.09001 * 109.46772 * 149.99705 * 13 12 11 38 38 H 1.08000 * 126.43954 * 179.97438 * 14 12 11 39 39 H 1.09003 * 109.46942 * 329.99584 * 16 15 14 40 40 H 1.08997 * 109.46856 * 210.00259 * 16 15 14 41 41 H 1.07994 * 120.03032 * 359.95651 * 19 18 17 42 42 H 1.07997 * 119.97046 * 180.02562 * 20 19 18 43 43 H 1.09001 * 109.46613 * 60.00397 * 22 21 20 44 44 H 0.96695 * 114.00385 * 180.02562 * 23 22 21 45 45 H 1.48506 * 110.00048 * 60.00676 * 24 22 21 46 46 H 1.48502 * 109.99996 * 181.32001 * 24 22 21 47 47 H 1.07996 * 119.97194 * 179.72944 * 25 21 20 48 48 H 1.07999 * 120.02648 * 180.26899 * 26 25 21 49 49 H 1.08997 * 113.61121 * 139.93662 * 28 6 5 50 50 H 1.08996 * 113.60981 * 270.84589 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 0.3238 5 6 3.3754 1.3719 0.7045 6 6 3.8219 2.3200 -0.4210 7 1 3.6220 3.3709 -0.2117 8 7 5.1928 2.0820 -0.8795 9 6 5.8828 3.0703 -1.4826 10 8 5.3672 4.1605 -1.6458 11 6 7.2550 2.8319 -1.9421 12 6 8.0622 3.7407 -2.5640 13 6 7.7151 5.1670 -2.9050 14 6 9.2779 3.0892 -2.8243 15 6 9.1607 1.8269 -2.3562 16 6 10.2279 0.7647 -2.4200 17 8 11.0354 0.8293 -1.2429 18 6 12.0512 -0.0678 -1.1415 19 6 12.8744 -0.0619 -0.0248 20 6 13.9060 -0.9752 0.0760 21 6 14.1180 -1.8949 -0.9344 22 6 15.2444 -2.8896 -0.8219 23 8 16.4877 -2.1923 -0.7224 24 14 15.2626 -3.9804 -2.3321 25 6 13.3021 -1.8993 -2.0507 26 6 12.2656 -0.9918 -2.1537 27 8 7.9384 1.6739 -1.8309 28 6 2.7529 1.6533 -1.3030 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.9095 0.4217 0.7125 33 1 3.3395 1.8455 1.6856 34 1 5.6039 1.2131 -0.7491 35 1 7.2721 5.2053 -3.9002 36 1 7.0027 5.5520 -2.1752 37 1 8.6193 5.7755 -2.8861 38 1 10.1438 3.5162 -3.3084 39 1 10.8521 0.9291 -3.2984 40 1 9.7595 -0.2173 -2.4859 41 1 12.7091 0.6561 0.7647 42 1 14.5469 -0.9714 0.9453 43 1 15.0998 -3.5032 0.0673 44 1 17.2585 -2.7712 -0.6473 45 1 15.4588 -3.1561 -3.5517 46 1 16.3491 -4.9864 -2.2189 47 1 13.4725 -2.6158 -2.8406 48 1 11.6260 -0.9985 -3.0239 49 1 2.2136 2.3541 -1.9403 50 1 3.1164 0.7802 -1.8447 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_4549632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:11:11 Heat of formation + Delta-G solvation = -68.798286 kcal Electronic energy + Delta-G solvation = -32540.378685 eV Core-core repulsion = 27888.940320 eV Total energy + Delta-G solvation = -4651.438365 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.95389 -41.32355 -41.18424 -39.81117 -39.15691 -37.38041 -37.35919 -35.39383 -34.29433 -33.17154 -32.04803 -31.61307 -28.95324 -28.51755 -27.65224 -26.80122 -26.19013 -25.12477 -24.00851 -22.78986 -22.46497 -22.09931 -21.36910 -20.63810 -19.45875 -19.19702 -18.54361 -18.29612 -17.75205 -17.47121 -16.99558 -16.83864 -16.77607 -16.60291 -16.23124 -16.07696 -15.74267 -15.60593 -15.45591 -15.19411 -15.06439 -14.59089 -14.47264 -14.27040 -14.13646 -14.07837 -13.92742 -13.74298 -13.54928 -13.50122 -13.47953 -13.39445 -12.88632 -12.75684 -12.50035 -12.24300 -12.18246 -12.12635 -11.90994 -11.87933 -11.74210 -11.30281 -10.82512 -10.50616 -10.47923 -10.31704 -10.02649 -9.72742 -9.21599 -4.91983 -0.28626 0.27635 0.32077 0.95086 1.32413 1.33237 1.61239 1.90935 1.93391 1.96212 2.36223 2.62719 2.90817 3.28047 3.37918 3.42545 3.49434 3.62314 3.65576 3.75326 3.75961 3.83513 3.85680 3.99091 4.02388 4.08220 4.27108 4.28186 4.30744 4.42480 4.44953 4.47977 4.49773 4.54921 4.59467 4.66792 4.68679 4.70253 4.71601 4.84007 4.88143 4.91912 4.95421 4.95911 4.98004 5.07121 5.16784 5.25830 5.26788 5.38318 5.51757 5.66612 5.69296 6.23352 6.28698 6.29641 6.60450 6.86664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.397 6.397 3 C 0.063 3.937 4 H 0.108 0.892 5 C -0.135 4.135 6 C 0.121 3.879 7 H 0.115 0.885 8 N -0.697 5.697 9 C 0.604 3.396 10 O -0.544 6.544 11 C -0.095 4.095 12 C -0.094 4.094 13 C -0.095 4.095 14 C -0.188 4.188 15 C 0.012 3.988 16 C 0.135 3.865 17 O -0.325 6.325 18 C 0.124 3.876 19 C -0.162 4.162 20 C -0.062 4.062 21 C -0.124 4.124 22 C -0.083 4.083 23 O -0.560 6.560 24 Si 0.763 3.237 25 C -0.080 4.080 26 C -0.201 4.201 27 O -0.160 6.160 28 C -0.166 4.166 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.415 0.585 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.182 0.818 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.093 0.907 44 H 0.394 0.606 45 H -0.297 1.297 46 H -0.290 1.290 47 H 0.148 0.852 48 H 0.162 0.838 49 H 0.076 0.924 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 -4.956 -0.448 5.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.316 6.316 3 C 0.005 3.995 4 H 0.125 0.875 5 C -0.173 4.173 6 C 0.017 3.983 7 H 0.133 0.867 8 N -0.347 5.347 9 C 0.392 3.608 10 O -0.424 6.424 11 C -0.147 4.147 12 C -0.097 4.097 13 C -0.151 4.151 14 C -0.207 4.207 15 C -0.040 4.040 16 C 0.061 3.939 17 O -0.240 6.240 18 C 0.079 3.921 19 C -0.181 4.181 20 C -0.080 4.080 21 C -0.124 4.124 22 C -0.191 4.191 23 O -0.370 6.370 24 Si 0.669 3.331 25 C -0.097 4.097 26 C -0.219 4.219 27 O -0.056 6.056 28 C -0.205 4.205 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.252 0.748 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.200 0.800 39 H 0.146 0.854 40 H 0.124 0.876 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.111 0.889 44 H 0.244 0.756 45 H -0.225 1.225 46 H -0.217 1.217 47 H 0.165 0.835 48 H 0.179 0.821 49 H 0.094 0.906 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.672 -4.248 -0.993 4.672 hybrid contribution 1.242 0.202 0.377 1.314 sum -0.430 -4.047 -0.616 4.116 Atomic orbital electron populations 1.22967 0.79727 1.03739 1.00867 1.87904 1.21281 1.27749 1.94642 1.23572 0.94167 0.85722 0.96033 0.87470 1.23577 0.95202 1.00088 0.98460 1.22332 0.79460 1.00714 0.95835 0.86671 1.45788 1.15149 1.14963 1.58838 1.16625 0.82220 0.84414 0.77582 1.90848 1.68591 1.24834 1.58121 1.21859 0.95274 0.85740 1.11839 1.20980 0.93217 0.98084 0.97455 1.20459 1.02887 0.89091 1.02678 1.21890 0.99719 0.92965 1.06156 1.22406 0.84642 0.97279 0.99663 1.21259 0.87885 0.96519 0.88242 1.86104 1.41463 1.53875 1.42579 1.19070 0.88248 0.89598 0.95138 1.20629 0.96826 1.02397 0.98218 1.20932 0.95364 0.92890 0.98809 1.19443 0.97575 0.99411 0.95976 1.24972 0.83662 0.98655 1.11831 1.86543 1.16475 1.38003 1.95961 0.94252 0.88108 0.76931 0.73848 1.21003 0.94275 0.97924 0.96487 1.21459 1.02070 0.97884 1.00497 1.83963 1.24014 1.34307 1.63346 1.24017 0.97339 1.01115 0.98049 0.92831 0.93362 0.88919 0.88282 0.88720 0.74792 0.90072 0.91050 0.89508 0.80038 0.85430 0.87573 0.84824 0.84695 0.88895 0.75583 1.22480 1.21692 0.83481 0.82096 0.90551 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.40 -1.07 10.72 -148.98 -1.60 -2.67 16 3 C 0.06 -0.06 4.31 31.18 0.13 0.08 16 4 H 0.11 -0.42 7.87 -2.39 -0.02 -0.44 16 5 C -0.14 0.30 7.66 31.12 0.24 0.54 16 6 C 0.12 0.06 4.21 45.52 0.19 0.25 16 7 H 0.12 0.25 7.50 -2.38 -0.02 0.23 16 8 N -0.70 -1.50 5.36 -444.01 -2.38 -3.87 16 9 C 0.60 4.60 7.79 86.44 0.67 5.28 16 10 O -0.54 -6.94 14.36 -4.33 -0.06 -7.00 16 11 C -0.10 -0.64 7.13 24.07 0.17 -0.47 16 12 C -0.09 -0.52 6.20 -19.74 -0.12 -0.64 16 13 C -0.09 -0.36 9.82 71.24 0.70 0.34 16 14 C -0.19 -0.31 10.73 22.07 0.24 -0.07 16 15 C 0.01 0.02 6.94 24.97 0.17 0.19 16 16 C 0.13 -0.50 5.27 71.24 0.38 -0.12 16 17 O -0.33 -0.76 10.12 -92.41 -0.94 -1.69 16 18 C 0.12 0.25 6.69 22.50 0.15 0.40 16 19 C -0.16 -0.53 9.99 22.37 0.22 -0.31 16 20 C -0.06 -0.17 9.60 22.25 0.21 0.04 16 21 C -0.12 -0.20 5.42 -19.85 -0.11 -0.31 16 22 C -0.08 0.09 2.81 71.23 0.20 0.29 16 23 O -0.56 -1.10 12.74 -148.98 -1.90 -3.00 16 24 Si 0.76 -2.21 29.78 68.60 2.04 -0.16 16 25 C -0.08 0.07 8.66 22.26 0.19 0.27 16 26 C -0.20 0.36 9.04 22.37 0.20 0.57 16 27 O -0.16 -0.70 10.40 -5.08 -0.05 -0.75 16 28 C -0.17 -0.04 7.73 31.18 0.24 0.20 16 29 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.10 -0.22 8.11 -2.39 -0.02 -0.24 16 33 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.42 -0.49 8.47 -92.71 -0.79 -1.27 16 35 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.07 0.54 6.45 -2.38 -0.02 0.52 16 37 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.18 -0.62 8.06 -2.91 -0.02 -0.64 16 39 H 0.13 -1.15 7.66 -2.39 -0.02 -1.17 16 40 H 0.11 -0.79 7.66 -2.39 -0.02 -0.81 16 41 H 0.13 0.30 8.06 -2.91 -0.02 0.27 16 42 H 0.14 0.16 8.06 -2.91 -0.02 0.14 16 43 H 0.09 -0.44 7.96 -2.39 -0.02 -0.46 16 44 H 0.39 -2.33 8.74 -74.06 -0.65 -2.98 16 45 H -0.30 -1.21 7.11 99.48 0.71 -0.50 16 46 H -0.29 -0.49 7.11 99.48 0.71 0.22 16 47 H 0.15 -0.77 4.87 -2.91 -0.01 -0.78 16 48 H 0.16 -1.32 6.30 -2.91 -0.02 -1.34 16 49 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 50 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 Total: 0.00 -21.59 419.43 0.03 -21.56 By element: Atomic # 1 Polarization: -9.69 SS G_CDS: -0.40 Total: -10.10 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 5.32 Total: 7.69 kcal Atomic # 7 Polarization: -1.50 SS G_CDS: -2.38 Total: -3.87 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -4.55 Total: -15.11 kcal Atomic # 14 Polarization: -2.21 SS G_CDS: 2.04 Total: -0.16 kcal Total: -21.59 0.03 -21.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_4549632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.240 kcal (2) G-P(sol) polarization free energy of solvation -21.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds