Wall clock time and date at job start Mon Mar 8 2021 04:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00352 * 2 1 4 4 H 1.08999 * 112.84975 * 18.79986 * 3 2 1 5 5 C 1.53777 * 113.61992 * 149.99859 * 3 2 1 6 6 C 1.53776 * 87.08340 * 140.06140 * 5 3 2 7 7 H 1.09000 * 113.61308 * 89.20123 * 6 5 3 8 8 N 1.46499 * 113.61726 * 220.01951 * 6 5 3 9 9 C 1.34784 * 119.99971 * 205.00181 * 8 6 5 10 10 O 1.21605 * 119.99806 * 359.72704 * 9 8 6 11 11 C 1.47377 * 119.99549 * 179.97438 * 9 8 6 12 12 C 1.36423 * 127.18543 * 179.70900 * 11 9 8 13 13 C 1.50695 * 125.80322 * 359.97438 * 12 11 9 14 14 O 1.42901 * 109.47102 * 90.00009 * 13 12 11 15 15 C 1.35903 * 117.00234 * 179.97438 * 14 13 12 16 16 C 1.38733 * 120.05294 * 359.72687 * 15 14 13 17 17 C 1.38142 * 119.93777 * 179.73855 * 16 15 14 18 18 C 1.38265 * 120.05981 * 0.51815 * 17 16 15 19 19 C 1.50697 * 119.94479 * 179.74508 * 18 17 16 20 20 O 1.42907 * 109.47003 * 245.01710 * 19 18 17 21 21 Si 1.86304 * 109.47324 * 5.01316 * 19 18 17 22 22 C 1.38264 * 120.10979 * 359.75679 * 18 17 16 23 23 C 1.38139 * 120.05533 * 359.97438 * 22 18 17 24 24 O 1.33654 * 108.39294 * 179.83916 * 12 11 9 25 25 C 1.34219 * 110.90739 * 0.44893 * 24 12 11 26 26 C 1.34175 * 109.12818 * 359.72508 * 25 24 12 27 27 C 1.53780 * 113.68862 * 247.53788 * 3 2 1 28 28 H 1.08997 * 109.47129 * 300.00302 * 1 2 3 29 29 H 1.08999 * 109.47105 * 60.00388 * 1 2 3 30 30 H 1.09003 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.09000 * 113.61068 * 25.51552 * 5 3 2 32 32 H 1.08998 * 113.61780 * 254.61528 * 5 3 2 33 33 H 0.96999 * 119.99984 * 25.00028 * 8 6 5 34 34 H 1.08996 * 109.47287 * 209.99618 * 13 12 11 35 35 H 1.08996 * 109.47364 * 330.00202 * 13 12 11 36 36 H 1.07994 * 120.02839 * 359.97438 * 16 15 14 37 37 H 1.08002 * 119.96855 * 180.22896 * 17 16 15 38 38 H 1.09001 * 109.47474 * 125.01672 * 19 18 17 39 39 H 0.96703 * 113.99822 * 59.99282 * 20 19 18 40 40 H 1.48496 * 109.99869 * 58.68433 * 21 19 18 41 41 H 1.48499 * 110.00042 * 180.02562 * 21 19 18 42 42 H 1.08004 * 119.97053 * 179.97438 * 22 18 17 43 43 H 1.08011 * 120.02748 * 179.97438 * 23 22 18 44 44 H 1.08001 * 125.43455 * 179.76581 * 25 24 12 45 45 H 1.07997 * 127.02910 * 180.02562 * 26 25 24 46 46 H 1.08997 * 113.62151 * 105.46081 * 27 3 2 47 47 H 1.09000 * 113.61579 * 334.54971 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0788 0.3237 5 6 3.3756 1.3719 0.7045 6 6 3.8221 2.3197 -0.4211 7 1 3.6222 3.3706 -0.2118 8 7 5.1930 2.0817 -0.8796 9 6 5.8939 3.0789 -1.4548 10 8 5.3866 4.1748 -1.5978 11 6 7.2732 2.8395 -1.9155 12 6 8.1084 3.7344 -2.5178 13 6 7.7799 5.1700 -2.8371 14 8 8.1436 5.9992 -1.7316 15 6 7.9122 7.3324 -1.8579 16 6 7.3519 7.8329 -3.0241 17 6 7.1127 9.1878 -3.1478 18 6 7.4411 10.0462 -2.1148 19 6 7.1843 11.5245 -2.2547 20 8 8.4292 12.2263 -2.2554 21 14 6.2870 11.8503 -3.8547 22 6 8.0049 9.5505 -0.9537 23 6 8.2410 8.1958 -0.8229 24 8 9.2686 3.1222 -2.7736 25 6 9.2340 1.8424 -2.3707 26 6 8.0343 1.5846 -1.8281 27 6 2.7531 1.6509 -1.3014 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.9094 0.4216 0.7125 32 1 3.3382 1.8458 1.6854 33 1 5.5962 1.2064 -0.7691 34 1 8.3341 5.4812 -3.7225 35 1 6.7105 5.2647 -3.0259 36 1 7.0994 7.1634 -3.8330 37 1 6.6730 9.5776 -4.0540 38 1 6.5740 11.8681 -1.4195 39 1 9.0244 11.9707 -2.9735 40 1 5.0053 11.1009 -3.8799 41 1 6.0284 13.3049 -4.0049 42 1 8.2609 10.2231 -0.1484 43 1 8.6819 7.8090 0.0841 44 1 10.0430 1.1335 -2.4672 45 1 7.6967 0.6471 -1.4117 46 1 2.2134 2.3502 -1.9399 47 1 3.1169 0.7770 -1.8418 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_4549634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:11:16 Heat of formation + Delta-G solvation = -67.481094 kcal Electronic energy + Delta-G solvation = -31266.283221 eV Core-core repulsion = 26770.439593 eV Total energy + Delta-G solvation = -4495.843628 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.150 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.72969 -41.32074 -41.19432 -39.77745 -39.22086 -37.32542 -37.16940 -34.66313 -33.65637 -32.81549 -31.99977 -31.39794 -28.20645 -27.69409 -26.80819 -26.24993 -25.66656 -23.97703 -23.72793 -22.42609 -22.08037 -21.50305 -20.60712 -19.51622 -19.13479 -18.28943 -18.21875 -17.45286 -17.23890 -17.01738 -16.86581 -16.79820 -16.47888 -16.26006 -16.15543 -15.88565 -15.74088 -15.60708 -15.34042 -15.01439 -14.68440 -14.56033 -14.36559 -14.20346 -13.86807 -13.70831 -13.54969 -13.50365 -13.47679 -13.12419 -12.79389 -12.29715 -12.21581 -12.18170 -12.08685 -12.07269 -11.88864 -11.78279 -11.16686 -10.98527 -10.51421 -10.41635 -10.17832 -10.07448 -9.84112 -9.26073 -5.01049 -0.06052 0.25176 0.27581 1.01782 1.32314 1.49927 1.64012 1.96101 1.99219 2.07884 2.44598 2.62852 2.90559 3.33308 3.37913 3.49632 3.55353 3.59033 3.68079 3.70406 3.76749 3.79038 3.84825 3.90217 3.93618 4.10005 4.26532 4.27694 4.40563 4.44986 4.48389 4.48498 4.52626 4.59196 4.64611 4.68252 4.69448 4.79501 4.82954 4.90587 4.91862 4.93787 4.99832 5.12454 5.23375 5.25195 5.41340 5.45875 5.66878 5.87300 6.22150 6.24273 6.40595 6.79074 7.05613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.062 3.938 4 H 0.103 0.897 5 C -0.134 4.134 6 C 0.123 3.877 7 H 0.106 0.894 8 N -0.696 5.696 9 C 0.585 3.415 10 O -0.571 6.571 11 C -0.226 4.226 12 C 0.042 3.958 13 C 0.135 3.865 14 O -0.323 6.323 15 C 0.124 3.876 16 C -0.205 4.205 17 C -0.074 4.074 18 C -0.161 4.161 19 C -0.069 4.069 20 O -0.556 6.556 21 Si 0.776 3.224 22 C -0.059 4.059 23 C -0.163 4.163 24 O -0.176 6.176 25 C -0.010 4.010 26 C -0.198 4.198 27 C -0.164 4.164 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.416 0.584 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.105 0.895 39 H 0.395 0.605 40 H -0.288 1.288 41 H -0.298 1.298 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.253 0.747 45 H 0.190 0.810 46 H 0.071 0.929 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 -5.902 -2.430 6.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.004 3.996 4 H 0.121 0.879 5 C -0.172 4.172 6 C 0.017 3.983 7 H 0.124 0.876 8 N -0.347 5.347 9 C 0.373 3.627 10 O -0.453 6.453 11 C -0.231 4.231 12 C -0.011 4.011 13 C 0.061 3.939 14 O -0.237 6.237 15 C 0.079 3.921 16 C -0.223 4.223 17 C -0.091 4.091 18 C -0.162 4.162 19 C -0.179 4.179 20 O -0.364 6.364 21 Si 0.682 3.318 22 C -0.077 4.077 23 C -0.182 4.182 24 O -0.071 6.071 25 C -0.076 4.076 26 C -0.217 4.217 27 C -0.203 4.203 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.253 0.747 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.122 0.878 39 H 0.245 0.755 40 H -0.215 1.215 41 H -0.226 1.226 42 H 0.156 0.844 43 H 0.150 0.850 44 H 0.269 0.731 45 H 0.208 0.792 46 H 0.090 0.910 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.055 -4.710 -2.349 5.264 hybrid contribution -0.364 -0.505 0.766 0.987 sum -0.310 -5.216 -1.584 5.460 Atomic orbital electron populations 1.22963 0.79802 1.03757 1.00776 1.87899 1.21192 1.27666 1.94661 1.23533 0.94199 0.85641 0.96263 0.87945 1.23578 0.95128 1.00228 0.98305 1.22193 0.80147 1.00172 0.95739 0.87642 1.45593 1.14548 1.14148 1.60383 1.17482 0.84344 0.83948 0.76877 1.90766 1.71550 1.25237 1.57697 1.21380 0.96256 0.96621 1.08794 1.22065 0.84225 0.94337 1.00461 1.21155 1.02375 0.81434 0.88981 1.86050 1.79797 1.15799 1.42072 1.19181 0.95760 0.82087 0.95047 1.21429 1.05438 0.97310 0.98168 1.21014 0.97368 0.92474 0.98289 1.20352 1.03844 0.96449 0.95548 1.25110 0.92107 0.88704 1.11941 1.86463 1.28552 1.64412 1.56985 0.93799 0.79970 0.76905 0.81132 1.20945 0.95540 0.93646 0.97548 1.20622 1.05757 0.92774 0.99015 1.83797 1.33903 1.24781 1.64650 1.24913 1.01069 0.82543 0.99079 1.23250 0.93995 0.98406 1.06034 1.23975 0.97335 1.01113 0.97926 0.92971 0.93444 0.88811 0.87824 0.89174 0.74693 0.87818 0.87579 0.83324 0.83077 0.87766 0.75501 1.21543 1.22624 0.84383 0.84953 0.73127 0.79235 0.91022 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.40 -0.95 10.72 -148.98 -1.60 -2.55 16 3 C 0.06 -0.05 4.31 31.12 0.13 0.08 16 4 H 0.10 -0.32 7.87 -2.39 -0.02 -0.34 16 5 C -0.13 0.34 7.66 31.12 0.24 0.57 16 6 C 0.12 0.06 4.24 45.52 0.19 0.26 16 7 H 0.11 0.41 7.47 -2.39 -0.02 0.39 16 8 N -0.70 -0.38 5.35 -443.35 -2.37 -2.76 16 9 C 0.58 3.97 7.81 86.65 0.68 4.65 16 10 O -0.57 -7.76 14.45 -4.05 -0.06 -7.82 16 11 C -0.23 -0.94 6.31 -18.99 -0.12 -1.06 16 12 C 0.04 0.22 7.00 25.26 0.18 0.40 16 13 C 0.13 0.65 4.74 71.23 0.34 0.99 16 14 O -0.32 -3.02 10.12 -92.46 -0.94 -3.95 16 15 C 0.12 0.94 6.69 22.51 0.15 1.09 16 16 C -0.20 -0.71 9.04 22.37 0.20 -0.51 16 17 C -0.07 -0.10 8.66 22.25 0.19 0.09 16 18 C -0.16 -0.47 5.35 -19.85 -0.11 -0.57 16 19 C -0.07 -0.10 2.80 71.23 0.20 0.10 16 20 O -0.56 -0.97 12.83 -148.98 -1.91 -2.89 16 21 Si 0.78 -0.58 29.80 68.60 2.04 1.47 16 22 C -0.06 -0.28 9.68 22.25 0.22 -0.06 16 23 C -0.16 -1.12 9.99 22.36 0.22 -0.89 16 24 O -0.18 -0.45 10.52 4.42 0.05 -0.40 16 25 C -0.01 0.04 12.03 66.89 0.80 0.85 16 26 C -0.20 0.63 10.60 23.65 0.25 0.88 16 27 C -0.16 -0.01 7.71 31.12 0.24 0.23 16 28 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 31 H 0.10 -0.37 8.12 -2.39 -0.02 -0.39 16 32 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.42 -2.07 7.90 -92.71 -0.73 -2.80 16 34 H 0.10 -0.05 7.65 -2.39 -0.02 -0.06 16 35 H 0.11 0.65 6.02 -2.39 -0.01 0.63 16 36 H 0.15 -0.11 6.30 -2.91 -0.02 -0.13 16 37 H 0.15 -0.60 4.90 -2.91 -0.01 -0.61 16 38 H 0.10 0.28 7.96 -2.39 -0.02 0.26 16 39 H 0.40 -2.52 8.70 -74.06 -0.64 -3.17 16 40 H -0.29 -1.27 7.11 99.48 0.71 -0.57 16 41 H -0.30 -1.94 7.11 99.48 0.71 -1.23 16 42 H 0.14 0.39 8.06 -2.91 -0.02 0.37 16 43 H 0.13 0.75 8.06 -2.90 -0.02 0.73 16 44 H 0.25 -3.37 8.06 -2.91 -0.02 -3.39 16 45 H 0.19 -1.90 7.74 -2.91 -0.02 -1.93 16 46 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 Total: 0.00 -24.01 397.12 0.14 -23.87 By element: Atomic # 1 Polarization: -12.94 SS G_CDS: -0.31 Total: -13.25 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 5.24 Total: 8.28 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -2.37 Total: -2.76 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -4.46 Total: -17.61 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: 2.04 Total: 1.47 kcal Total: -24.01 0.14 -23.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_4549634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.610 kcal (2) G-P(sol) polarization free energy of solvation -24.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds