Wall clock time and date at job start Mon Mar 8 2021 04:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35996 * 117.00041 * 2 1 4 4 C 1.39151 * 120.07217 * 179.97438 * 3 2 1 5 5 O 1.35995 * 120.07763 * 0.02562 * 4 3 2 6 6 C 1.42891 * 117.00188 * 179.72322 * 5 4 3 7 7 C 1.50706 * 109.47345 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99401 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00125 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99944 * 179.97438 * 9 7 6 11 11 H 1.09005 * 112.85153 * 23.79532 * 10 9 7 12 12 C 1.53783 * 113.61915 * 154.99988 * 10 9 7 13 13 C 1.53781 * 87.08483 * 139.97848 * 12 10 9 14 14 H 1.08999 * 113.61080 * 89.19754 * 13 12 10 15 15 O 1.42892 * 113.61527 * 220.02012 * 13 12 10 16 16 C 1.42900 * 114.00093 * 210.00409 * 15 13 12 17 17 C 1.53783 * 87.08086 * 334.56903 * 13 12 10 18 18 C 1.38570 * 119.85250 * 179.72809 * 4 3 2 19 19 C 1.38247 * 119.99930 * 0.25054 * 18 4 3 20 20 N 1.48001 * 119.92855 * 180.02562 * 19 18 4 21 21 O 1.21798 * 119.99728 * 359.97438 * 20 19 18 22 22 O 1.21803 * 120.00199 * 180.02562 * 20 19 18 23 23 C 1.38255 * 120.14346 * 0.02562 * 19 18 4 24 24 C 1.50701 * 119.92495 * 179.97438 * 23 19 18 25 25 O 1.42902 * 109.47213 * 74.99600 * 24 23 19 26 26 Si 1.86298 * 109.47114 * 194.99764 * 24 23 19 27 27 C 1.38245 * 120.14805 * 359.97298 * 23 19 18 28 28 H 1.09006 * 109.47100 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47497 * 300.00088 * 1 2 3 30 30 H 1.08993 * 109.47259 * 60.00814 * 1 2 3 31 31 H 1.09002 * 109.47220 * 299.99841 * 6 5 4 32 32 H 1.08996 * 109.47672 * 59.99785 * 6 5 4 33 33 H 0.97000 * 120.00241 * 359.97438 * 9 7 6 34 34 H 1.08996 * 113.61194 * 254.53320 * 12 10 9 35 35 H 1.08996 * 113.60808 * 25.34469 * 12 10 9 36 36 H 1.08996 * 109.47010 * 299.99650 * 16 15 13 37 37 H 1.08999 * 109.47454 * 59.99577 * 16 15 13 38 38 H 1.09005 * 109.47280 * 179.97438 * 16 15 13 39 39 H 1.09003 * 113.61230 * 270.88212 * 17 13 12 40 40 H 1.08998 * 113.61526 * 139.97764 * 17 13 12 41 41 H 1.08001 * 120.00237 * 180.23265 * 18 4 3 42 42 H 1.08999 * 109.47099 * 314.99991 * 24 23 19 43 43 H 0.96698 * 113.99839 * 60.00053 * 25 24 23 44 44 H 1.48499 * 109.99923 * 58.68227 * 26 24 23 45 45 H 1.48504 * 110.00182 * 179.97438 * 26 24 23 46 46 H 1.08005 * 119.99641 * 180.02562 * 27 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1795 0.1477 0.0005 6 6 5.6002 0.3007 -0.0050 7 6 6.2519 -1.0582 -0.0048 8 8 5.5670 -2.0591 0.0002 9 7 7.5957 -1.1611 -0.0091 10 6 8.2291 -2.4821 -0.0083 11 1 7.5820 -3.2621 -0.4097 12 6 9.6449 -2.4868 -0.6085 13 6 10.0338 -3.4600 0.5169 14 1 9.8819 -4.5082 0.2595 15 8 11.3259 -3.2064 1.0719 16 6 11.9842 -4.3733 1.5689 17 6 8.8821 -2.8513 1.3342 18 6 4.0603 2.5233 -0.0052 19 6 3.3029 3.6799 -0.0061 20 7 3.9714 5.0003 -0.0128 21 8 5.1875 5.0671 -0.0170 22 8 3.3054 6.0201 -0.0132 23 6 1.9223 3.6057 -0.0009 24 6 1.1015 4.8696 -0.0014 25 8 1.1298 5.4555 -1.3045 26 14 -0.6579 4.4676 0.4607 27 6 1.2932 2.3747 0.0048 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 5.9032 0.8483 -0.8975 32 1 5.9098 0.8526 0.8824 33 1 8.1434 -0.3606 -0.0127 34 1 9.6956 -2.9277 -1.6040 35 1 10.1485 -1.5221 -0.5467 36 1 11.3793 -4.8245 2.3554 37 1 12.1174 -5.0888 0.7575 38 1 12.9583 -4.0968 1.9726 39 1 9.1778 -1.9866 1.9284 40 1 8.3170 -3.5866 1.9070 41 1 5.1386 2.5840 -0.0086 42 1 1.5157 5.5721 0.7218 43 1 0.7754 4.8848 -2.0001 44 1 -0.6978 3.8287 1.8006 45 1 -1.4777 5.7059 0.4644 46 1 0.2145 2.3196 0.0084 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_4549636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:11:20 Heat of formation + Delta-G solvation = -110.077836 kcal Electronic energy + Delta-G solvation = -33589.092676 eV Core-core repulsion = 28645.063901 eV Total energy + Delta-G solvation = -4944.028775 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.144 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.40904 -42.12919 -41.34930 -40.25791 -39.43746 -39.15915 -37.75324 -37.30348 -37.10833 -34.39731 -32.68099 -32.52681 -29.98254 -28.77234 -27.92658 -27.73636 -26.78504 -25.91735 -24.92405 -23.75843 -23.18333 -21.84108 -21.09939 -20.77848 -19.85208 -19.51153 -18.75057 -18.67369 -18.49170 -18.05856 -17.76217 -17.65559 -17.31868 -16.87788 -16.80450 -16.42830 -16.23309 -16.12663 -16.08534 -15.58534 -15.43298 -15.11446 -14.91230 -14.65632 -14.38756 -13.99033 -13.89872 -13.53636 -13.48448 -13.45648 -13.03148 -12.78108 -12.67484 -12.50558 -12.44788 -12.33850 -12.28100 -12.22328 -12.21463 -12.16355 -11.88031 -11.78734 -11.08399 -10.53747 -10.50100 -10.46431 -10.19905 -9.49761 -5.13744 -1.37278 -0.44085 0.15594 0.29895 1.12704 1.21989 1.34095 1.57282 1.89104 1.89401 1.93791 2.29402 2.90288 2.97500 3.17850 3.26365 3.38180 3.45753 3.49740 3.53977 3.56634 3.76342 3.85210 3.88074 3.93433 3.94622 4.05338 4.10974 4.22310 4.28454 4.39303 4.41692 4.49713 4.53379 4.54628 4.69489 4.70527 4.72888 4.82064 4.84139 4.92106 4.92747 4.98872 5.24323 5.37810 5.58139 6.05599 6.23351 6.36115 6.45837 6.71501 7.03087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.307 6.307 3 C 0.172 3.828 4 C 0.100 3.900 5 O -0.290 6.290 6 C 0.027 3.973 7 C 0.518 3.482 8 O -0.565 6.565 9 N -0.698 5.698 10 C 0.124 3.876 11 H 0.107 0.893 12 C -0.133 4.133 13 C 0.059 3.941 14 H 0.103 0.897 15 O -0.396 6.396 16 C 0.023 3.977 17 C -0.167 4.167 18 C -0.110 4.110 19 C -0.046 4.046 20 N 0.035 4.965 21 O -0.188 6.188 22 O -0.165 6.165 23 C -0.040 4.040 24 C -0.092 4.092 25 O -0.536 6.536 26 Si 0.788 3.212 27 C -0.163 4.163 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.421 0.579 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.182 0.818 42 H 0.114 0.886 43 H 0.393 0.607 44 H -0.272 1.272 45 H -0.291 1.291 46 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.830 -5.456 -1.713 6.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.219 6.219 3 C 0.123 3.877 4 C 0.053 3.947 5 O -0.202 6.202 6 C -0.051 4.051 7 C 0.304 3.696 8 O -0.443 6.443 9 N -0.352 5.352 10 C 0.019 3.981 11 H 0.125 0.875 12 C -0.171 4.171 13 C 0.001 3.999 14 H 0.120 0.880 15 O -0.315 6.315 16 C -0.073 4.073 17 C -0.207 4.207 18 C -0.130 4.130 19 C -0.131 4.131 20 N 0.548 4.452 21 O -0.398 6.398 22 O -0.379 6.379 23 C -0.042 4.042 24 C -0.200 4.200 25 O -0.343 6.343 26 Si 0.690 3.310 27 C -0.181 4.181 28 H 0.139 0.861 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.260 0.740 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.200 0.800 42 H 0.132 0.868 43 H 0.242 0.758 44 H -0.198 1.198 45 H -0.218 1.218 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.882 -6.404 -0.821 7.071 hybrid contribution 1.238 0.983 0.415 1.635 sum -1.643 -5.421 -0.406 5.679 Atomic orbital electron populations 1.23815 0.74663 1.07087 1.04204 1.86334 1.24880 1.24470 1.86169 1.18668 0.89114 0.86414 0.93522 1.17968 0.88855 0.85075 1.02816 1.86297 1.18396 1.26822 1.88730 1.22908 0.78857 0.96052 1.07281 1.20336 0.83063 0.90458 0.75719 1.90774 1.63876 1.39753 1.49880 1.45630 1.05206 1.10029 1.74326 1.22187 0.93047 0.85571 0.97285 0.87522 1.23574 0.93104 1.01547 0.98850 1.23568 0.82326 0.99503 0.94515 0.87961 1.87901 1.30986 1.33548 1.79056 1.22956 0.97920 0.87871 0.98540 1.24003 0.96928 1.02125 0.97597 1.20905 1.02988 0.88195 1.00916 1.20559 0.92782 0.81886 1.17827 1.43727 1.00829 1.03460 0.97163 1.94504 0.96525 1.94131 1.54636 1.94576 1.64398 1.25428 1.53474 1.20233 0.91030 0.97697 0.95234 1.25777 1.10632 0.92789 0.90786 1.86670 1.87030 1.44614 1.15993 0.94391 0.71737 0.82170 0.82708 1.21088 1.01793 0.88057 1.07168 0.86070 0.90177 0.88801 0.85287 0.85597 0.74048 0.88991 0.87672 0.93492 0.92913 0.88916 0.88754 0.91206 0.80045 0.86837 0.75791 1.19774 1.21787 0.78894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.81 113.37 1.11 1.16 16 2 O -0.31 0.17 10.28 -79.64 -0.82 -0.65 16 3 C 0.17 -0.20 6.70 22.57 0.15 -0.05 16 4 C 0.10 0.06 6.70 22.57 0.15 0.21 16 5 O -0.29 -0.96 9.45 -67.08 -0.63 -1.59 16 6 C 0.03 -0.11 5.22 71.24 0.37 0.26 16 7 C 0.52 0.83 7.91 87.66 0.69 1.52 16 8 O -0.56 -6.99 16.10 16.01 0.26 -6.73 16 9 N -0.70 2.95 5.35 -440.03 -2.36 0.59 16 10 C 0.12 -0.28 4.24 45.52 0.19 -0.09 16 11 H 0.11 0.13 7.46 -2.38 -0.02 0.11 16 12 C -0.13 0.63 7.66 31.12 0.24 0.87 16 13 C 0.06 -0.13 4.31 31.12 0.13 0.00 16 14 H 0.10 -0.45 7.87 -2.39 -0.02 -0.47 16 15 O -0.40 -0.63 10.71 -148.98 -1.60 -2.22 16 16 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 17 C -0.17 0.26 7.71 31.12 0.24 0.50 16 18 C -0.11 0.04 8.54 22.35 0.19 0.23 16 19 C -0.05 -0.16 6.85 36.38 0.25 0.09 16 20 N 0.04 0.35 4.45 -46.46 -0.21 0.14 16 21 O -0.19 -2.07 18.44 18.89 0.35 -1.72 16 22 O -0.16 -2.15 14.62 25.10 0.37 -1.79 16 23 C -0.04 0.02 5.26 -19.86 -0.10 -0.08 16 24 C -0.09 -0.01 1.74 71.24 0.12 0.11 16 25 O -0.54 -0.64 11.80 -129.62 -1.53 -2.17 16 26 Si 0.79 -4.21 29.91 68.60 2.05 -2.16 16 27 C -0.16 0.87 7.65 22.35 0.17 1.04 16 28 H 0.12 -1.42 8.14 -2.38 -0.02 -1.44 16 29 H 0.08 -1.06 7.65 -2.39 -0.02 -1.08 16 30 H 0.09 -1.45 7.67 -2.39 -0.02 -1.46 16 31 H 0.13 -1.30 7.66 -2.39 -0.02 -1.32 16 32 H 0.13 -1.20 7.66 -2.39 -0.02 -1.22 16 33 H 0.42 -4.54 8.73 -92.71 -0.81 -5.35 16 34 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.10 -0.62 8.12 -2.39 -0.02 -0.64 16 36 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.09 -0.37 8.14 -2.38 -0.02 -0.39 16 39 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.18 -0.85 5.85 -2.91 -0.02 -0.87 16 42 H 0.11 0.57 6.07 -2.39 -0.01 0.55 16 43 H 0.39 -3.48 8.70 -74.06 -0.64 -4.12 16 44 H -0.27 0.54 7.11 99.48 0.71 1.25 16 45 H -0.29 -0.80 7.11 99.48 0.71 -0.09 16 46 H 0.19 -2.46 3.36 -2.91 -0.01 -2.47 16 Total: 0.00 -32.23 390.28 0.68 -31.54 By element: Atomic # 1 Polarization: -19.85 SS G_CDS: -0.35 Total: -20.19 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 5.15 Total: 6.95 kcal Atomic # 7 Polarization: 3.30 SS G_CDS: -2.56 Total: 0.73 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -3.60 Total: -16.88 kcal Atomic # 14 Polarization: -4.21 SS G_CDS: 2.05 Total: -2.16 kcal Total: -32.23 0.68 -31.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_4549636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.536 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds