Wall clock time and date at job start Mon Mar 8 2021 04:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00393 * 2 1 4 4 H 1.09002 * 112.90574 * 341.24841 * 3 2 1 5 5 C 1.53779 * 113.61588 * 112.50113 * 3 2 1 6 6 C 1.53779 * 87.08402 * 139.98302 * 5 3 2 7 7 H 1.09000 * 113.61527 * 89.11480 * 6 5 3 8 8 N 1.46502 * 113.69422 * 220.01038 * 6 5 3 9 9 C 1.34770 * 120.00218 * 252.53677 * 8 6 5 10 10 O 1.21283 * 119.99821 * 359.97438 * 9 8 6 11 11 C 1.50701 * 120.00331 * 179.97438 * 9 8 6 12 12 O 1.42901 * 109.46996 * 180.02562 * 11 9 8 13 13 C 1.35904 * 116.99969 * 180.02562 * 12 11 9 14 14 C 1.38705 * 120.05890 * 179.97438 * 13 12 11 15 15 N 1.48009 * 120.02620 * 359.94788 * 14 13 12 16 16 O 1.21792 * 119.99590 * 180.02562 * 15 14 13 17 17 O 1.21801 * 119.99956 * 0.02562 * 15 14 13 18 18 C 1.38169 * 119.94358 * 179.97438 * 14 13 12 19 19 C 1.38236 * 120.05793 * 0.02562 * 18 14 13 20 20 C 1.50700 * 119.94504 * 179.97438 * 19 18 14 21 21 O 1.42904 * 109.46798 * 299.99322 * 20 19 18 22 22 Si 1.86302 * 109.47123 * 179.97438 * 20 19 18 23 23 C 1.38294 * 120.10966 * 359.97438 * 19 18 14 24 24 C 1.38117 * 120.05665 * 359.74919 * 23 19 18 25 25 C 1.53784 * 113.61434 * 209.99830 * 3 2 1 26 26 H 1.08994 * 109.46959 * 300.00297 * 1 2 3 27 27 H 1.09007 * 109.46503 * 60.00032 * 1 2 3 28 28 H 1.08995 * 109.47463 * 179.97438 * 1 2 3 29 29 H 1.09006 * 113.61307 * 25.43504 * 5 3 2 30 30 H 1.09007 * 113.61642 * 254.53261 * 5 3 2 31 31 H 0.97001 * 119.99708 * 72.52502 * 8 6 5 32 32 H 1.08996 * 109.46761 * 299.99334 * 11 9 8 33 33 H 1.08995 * 109.46952 * 59.99377 * 11 9 8 34 34 H 1.08003 * 119.96775 * 179.97438 * 18 14 13 35 35 H 1.08993 * 109.47189 * 59.99694 * 20 19 18 36 36 H 0.96697 * 113.99937 * 300.00552 * 21 20 19 37 37 H 1.48498 * 110.00100 * 179.97438 * 22 20 19 38 38 H 1.48497 * 110.00126 * 301.31544 * 22 20 19 39 39 H 1.08003 * 119.96872 * 180.02562 * 23 19 18 40 40 H 1.08008 * 120.02835 * 180.27727 * 24 23 19 41 41 H 1.09004 * 113.61451 * 105.47160 * 25 3 2 42 42 H 1.08994 * 113.61477 * 334.56462 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3144 2.0797 -0.3228 5 6 2.7535 1.6488 1.3017 6 6 3.8228 2.3180 0.4223 7 1 3.6224 3.3692 0.2149 8 7 5.1943 2.0797 0.8790 9 6 5.8954 3.0760 1.4553 10 8 5.3911 4.1701 1.5953 11 6 7.3059 2.8308 1.9257 12 8 7.8327 4.0299 2.4973 13 6 9.1047 3.9795 2.9733 14 6 9.6793 5.1071 3.5408 15 7 8.9080 6.3674 3.6278 16 8 9.4132 7.3573 4.1259 17 8 7.7681 6.4144 3.2013 18 6 10.9724 5.0531 4.0244 19 6 11.6937 3.8766 3.9425 20 6 13.1041 3.8207 4.4703 21 8 13.9118 4.7709 3.7725 22 14 13.7957 2.1099 4.2140 23 6 11.1230 2.7509 3.3771 24 6 9.8287 2.7982 2.8974 25 6 3.3757 1.3717 -0.7045 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1167 0.7738 1.8410 30 1 2.2141 2.3476 1.9412 31 1 5.5977 1.2047 0.7668 32 1 7.3063 2.0403 2.6762 33 1 7.9236 2.5290 1.0799 34 1 11.4204 5.9310 4.4661 35 1 13.1035 4.0563 5.5345 36 1 13.9580 4.6222 2.8181 37 1 15.1866 2.0417 4.7298 38 1 12.9464 1.1094 4.9088 39 1 11.6885 1.8329 3.3146 40 1 9.3819 1.9175 2.4599 41 1 3.3386 1.8469 -1.6848 42 1 3.9089 0.4211 -0.7137 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_4549638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:11:24 Heat of formation + Delta-G solvation = -82.835183 kcal Electronic energy + Delta-G solvation = -28888.322247 eV Core-core repulsion = 24419.694613 eV Total energy + Delta-G solvation = -4468.627634 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.29805 -41.81426 -41.14012 -40.04873 -39.24318 -37.59743 -37.42502 -37.20222 -34.36675 -33.45968 -32.23796 -29.97956 -27.82721 -27.75051 -26.77018 -26.59071 -25.03092 -23.88448 -22.81503 -21.77759 -21.06094 -20.53134 -19.77861 -19.19055 -18.64402 -18.44238 -18.15734 -18.09776 -17.58089 -17.13523 -16.83882 -16.38277 -16.19226 -16.14742 -16.03618 -15.64134 -15.46465 -15.15762 -14.76925 -14.68663 -14.04148 -13.96101 -13.75716 -13.48286 -13.43069 -13.22913 -12.76286 -12.70990 -12.37888 -12.28143 -12.27448 -12.20926 -12.17914 -12.14131 -11.94455 -11.85935 -11.01270 -10.83785 -10.56470 -10.48625 -10.15120 -9.78980 -4.99417 -1.31588 -0.24375 0.15518 0.35222 1.20053 1.27420 1.42584 1.64294 2.02304 2.05407 2.28625 2.91115 3.12133 3.25693 3.39318 3.42021 3.51160 3.52576 3.64002 3.71323 3.79019 3.79854 3.88306 3.93337 4.02526 4.28556 4.31144 4.35869 4.50983 4.51455 4.54060 4.63372 4.72279 4.72910 4.83980 4.85257 4.94771 4.94957 5.01431 5.07330 5.18952 5.43247 5.75702 6.23997 6.41534 6.44170 6.73596 7.13599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.394 6.394 3 C 0.058 3.942 4 H 0.098 0.902 5 C -0.168 4.168 6 C 0.123 3.877 7 H 0.100 0.900 8 N -0.695 5.695 9 C 0.509 3.491 10 O -0.566 6.566 11 C 0.025 3.975 12 O -0.292 6.292 13 C 0.194 3.806 14 C -0.105 4.105 15 N 0.034 4.966 16 O -0.203 6.203 17 O -0.174 6.174 18 C -0.004 4.004 19 C -0.150 4.150 20 C -0.082 4.082 21 O -0.558 6.558 22 Si 0.800 3.200 23 C -0.005 4.005 24 C -0.188 4.188 25 C -0.129 4.129 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.424 0.576 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.109 0.891 36 H 0.398 0.602 37 H -0.306 1.306 38 H -0.264 1.264 39 H 0.189 0.811 40 H 0.207 0.793 41 H 0.090 0.910 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.935 -14.034 -5.546 15.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.313 6.313 3 C -0.001 4.001 4 H 0.116 0.884 5 C -0.207 4.207 6 C 0.018 3.982 7 H 0.118 0.882 8 N -0.350 5.350 9 C 0.295 3.705 10 O -0.443 6.443 11 C -0.052 4.052 12 O -0.202 6.202 13 C 0.144 3.856 14 C -0.190 4.190 15 N 0.544 4.456 16 O -0.411 6.411 17 O -0.387 6.387 18 C -0.023 4.023 19 C -0.151 4.151 20 C -0.190 4.190 21 O -0.366 6.366 22 Si 0.703 3.297 23 C -0.022 4.022 24 C -0.206 4.206 25 C -0.167 4.167 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.262 0.738 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.127 0.873 36 H 0.248 0.752 37 H -0.235 1.235 38 H -0.190 1.190 39 H 0.206 0.794 40 H 0.224 0.776 41 H 0.108 0.892 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.274 -14.268 -4.524 15.322 hybrid contribution -0.843 1.411 0.739 1.802 sum 2.431 -12.857 -3.785 13.621 Atomic orbital electron populations 1.22952 0.79931 1.03726 1.00683 1.87891 1.21048 1.27650 1.94677 1.23563 0.94463 0.85561 0.96482 0.88372 1.24006 0.97554 1.01169 0.97936 1.22125 0.80397 0.99998 0.95676 0.88193 1.45551 1.14306 1.14403 1.60728 1.20572 0.87906 0.84407 0.77659 1.90846 1.71694 1.26087 1.55707 1.23130 0.92625 0.86669 1.02776 1.86471 1.24568 1.37372 1.71801 1.18972 0.84591 0.92504 0.89548 1.20866 0.95824 0.83557 1.18753 1.43906 1.01102 1.02986 0.97600 1.94501 1.72921 1.26966 1.46680 1.94678 1.03076 1.91404 1.49588 1.20831 0.88454 1.00686 0.92325 1.20459 0.98274 0.92686 1.03730 1.25478 0.87329 1.07521 0.98710 1.86529 1.69356 1.54494 1.26247 0.93793 0.75983 0.70808 0.89084 1.21725 0.93819 0.98188 0.88473 1.21823 0.95710 0.96618 1.06496 1.23557 0.94669 1.00350 0.98111 0.93645 0.93024 0.88777 0.88386 0.91713 0.73773 0.83973 0.83429 0.83281 0.87322 0.75178 1.23453 1.18985 0.79439 0.77617 0.89161 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 10.85 113.37 1.23 1.16 16 2 O -0.39 -0.30 10.71 -148.98 -1.60 -1.90 16 3 C 0.06 -0.14 4.31 31.12 0.13 -0.01 16 4 H 0.10 -0.38 7.87 -2.39 -0.02 -0.40 16 5 C -0.17 0.30 7.71 31.12 0.24 0.54 16 6 C 0.12 -0.32 4.24 45.52 0.19 -0.12 16 7 H 0.10 0.24 7.46 -2.39 -0.02 0.22 16 8 N -0.70 4.26 5.36 -440.03 -2.36 1.90 16 9 C 0.51 0.40 7.91 87.66 0.69 1.09 16 10 O -0.57 -8.24 16.10 16.00 0.26 -7.99 16 11 C 0.02 -0.19 5.22 71.24 0.37 0.18 16 12 O -0.29 -1.22 7.68 -63.44 -0.49 -1.70 16 13 C 0.19 0.05 6.67 22.51 0.15 0.20 16 14 C -0.10 -0.73 6.87 36.47 0.25 -0.47 16 15 N 0.03 0.58 4.45 -46.24 -0.21 0.37 16 16 O -0.20 -3.84 18.45 18.90 0.35 -3.49 16 17 O -0.17 -3.77 17.24 25.61 0.44 -3.33 16 18 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 19 C -0.15 0.88 5.39 -19.85 -0.11 0.77 16 20 C -0.08 0.51 2.82 71.24 0.20 0.71 16 21 O -0.56 2.02 12.77 -148.98 -1.90 0.11 16 22 Si 0.80 -8.30 29.79 68.60 2.04 -6.25 16 23 C 0.00 0.06 8.66 22.25 0.19 0.25 16 24 C -0.19 2.11 9.04 22.37 0.20 2.32 16 25 C -0.13 0.75 7.66 31.12 0.24 0.99 16 26 H 0.04 -0.16 8.14 -2.39 -0.02 -0.18 16 27 H 0.05 -0.24 8.14 -2.38 -0.02 -0.26 16 28 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H 0.10 -0.24 8.14 -2.38 -0.02 -0.26 16 30 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 31 H 0.42 -6.15 8.73 -92.71 -0.81 -6.95 16 32 H 0.14 -2.30 7.65 -2.39 -0.02 -2.32 16 33 H 0.15 -2.51 7.67 -2.39 -0.02 -2.53 16 34 H 0.15 0.60 7.61 -2.91 -0.02 0.58 16 35 H 0.11 -0.46 7.96 -2.39 -0.02 -0.48 16 36 H 0.40 -4.91 8.70 -74.06 -0.64 -5.56 16 37 H -0.31 0.15 7.11 99.48 0.71 0.85 16 38 H -0.26 2.21 7.11 99.48 0.71 2.91 16 39 H 0.19 -3.71 4.87 -2.91 -0.01 -3.72 16 40 H 0.21 -4.41 6.30 -2.91 -0.02 -4.43 16 41 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H 0.11 -0.89 8.12 -2.39 -0.02 -0.91 16 Total: 0.00 -39.36 365.02 0.41 -38.95 By element: Atomic # 1 Polarization: -24.16 SS G_CDS: -0.32 Total: -24.48 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 4.19 Total: 7.80 kcal Atomic # 7 Polarization: 4.83 SS G_CDS: -2.56 Total: 2.27 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -2.94 Total: -18.29 kcal Atomic # 14 Polarization: -8.30 SS G_CDS: 2.04 Total: -6.25 kcal Total: -39.36 0.41 -38.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_4549638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.884 kcal (2) G-P(sol) polarization free energy of solvation -39.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds