Wall clock time and date at job start Mon Mar 8 2021 04:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35966 * 117.00256 * 2 1 4 4 C 1.39445 * 120.12257 * 179.97438 * 3 2 1 5 5 O 1.34777 * 133.24456 * 0.04230 * 4 3 2 6 6 C 1.34926 * 110.84165 * 179.97438 * 5 4 3 7 7 C 1.46998 * 125.13859 * 179.97438 * 6 5 4 8 8 O 1.21650 * 119.99920 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99748 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99653 * 180.02562 * 9 7 6 11 11 H 1.09002 * 112.84935 * 334.66222 * 10 9 7 12 12 C 1.53786 * 113.61643 * 105.85894 * 10 9 7 13 13 C 1.54049 * 86.98426 * 140.01639 * 12 10 9 14 14 H 1.08996 * 113.68970 * 89.12734 * 13 12 10 15 15 O 1.42899 * 113.62058 * 220.02259 * 13 12 10 16 16 C 1.42907 * 114.00006 * 247.49984 * 15 13 12 17 17 C 1.53781 * 113.61305 * 203.46742 * 10 9 7 18 18 C 1.35810 * 109.71842 * 0.22225 * 6 5 4 19 19 C 1.40608 * 119.13421 * 179.97438 * 4 3 2 20 20 C 1.39772 * 120.12149 * 0.03697 * 19 4 3 21 21 C 1.50706 * 120.09512 * 179.97438 * 20 19 4 22 22 O 1.42893 * 109.47730 * 74.99452 * 21 20 19 23 23 Si 1.86304 * 109.47142 * 194.99765 * 21 20 19 24 24 C 1.36630 * 119.81356 * 359.97438 * 20 19 4 25 25 C 1.38260 * 120.11694 * 0.05966 * 3 2 1 26 26 H 1.08993 * 109.47029 * 60.00608 * 1 2 3 27 27 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46750 * 299.99935 * 1 2 3 29 29 H 0.96995 * 120.00200 * 359.97438 * 9 7 6 30 30 H 1.08992 * 113.61675 * 254.61383 * 12 10 9 31 31 H 1.09000 * 113.60973 * 25.51671 * 12 10 9 32 32 H 1.08996 * 109.46874 * 59.99756 * 16 15 13 33 33 H 1.08999 * 109.47160 * 180.02562 * 16 15 13 34 34 H 1.09004 * 109.46662 * 299.99626 * 16 15 13 35 35 H 1.08999 * 113.61567 * 334.48111 * 17 10 9 36 36 H 1.08998 * 113.61196 * 105.38466 * 17 10 9 37 37 H 1.08005 * 126.95117 * 179.76915 * 18 6 5 38 38 H 1.08998 * 109.46682 * 314.99238 * 21 20 19 39 39 H 0.96703 * 113.99877 * 59.99733 * 22 21 20 40 40 H 1.48493 * 109.99912 * 179.97438 * 23 21 20 41 41 H 1.48501 * 109.99868 * 301.31597 * 23 21 20 42 42 H 1.07999 * 119.75403 * 180.02562 * 24 20 19 43 43 H 1.08006 * 119.66421 * 359.94771 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2114 0.0000 4 6 3.4388 1.2873 0.0005 5 8 4.4142 0.3573 0.0004 6 6 5.6318 0.9386 0.0006 7 6 6.9132 0.2184 0.0010 8 8 7.9596 0.8388 0.0016 9 7 6.9287 -1.1293 0.0008 10 6 8.2058 -1.8471 0.0018 11 1 9.0200 -1.2630 -0.4272 12 6 8.5530 -2.4849 1.3574 13 6 9.0742 -3.6967 0.5618 14 1 10.1257 -3.6197 0.2854 15 8 8.7472 -4.9548 1.1553 16 6 9.8773 -5.6738 1.6535 17 6 8.1100 -3.2755 -0.5597 18 6 5.4944 2.2898 0.0058 19 6 4.0555 2.5510 0.0000 20 6 3.2766 3.7116 -0.0003 21 6 3.9382 5.0656 -0.0003 22 8 4.4610 5.3404 -1.3015 23 14 2.6863 6.3685 0.4538 24 6 1.9137 3.6151 -0.0006 25 6 1.2958 2.3726 0.0012 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 6.0944 -1.6240 0.0007 30 1 9.3311 -1.9523 1.9041 31 1 7.6803 -2.7082 1.9711 32 1 10.3788 -5.0787 2.4167 33 1 9.5455 -6.6170 2.0874 34 1 10.5697 -5.8741 0.8357 35 1 7.1165 -3.7146 -0.4691 36 1 8.5308 -3.3807 -1.5597 37 1 6.2875 3.0230 0.0107 38 1 4.7503 5.0731 0.7266 39 1 3.7925 5.3495 -2.0001 40 1 3.3265 7.7084 0.4579 41 1 1.5581 6.3471 -0.5115 42 1 1.3129 4.5125 -0.0013 43 1 0.2174 2.3120 0.0014 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9984030_6672420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:12:02 Heat of formation + Delta-G solvation = -76.405628 kcal Electronic energy + Delta-G solvation = -28361.462868 eV Core-core repulsion = 24148.996002 eV Total energy + Delta-G solvation = -4212.466865 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.79129 -41.38343 -40.64409 -39.82506 -39.14012 -37.37113 -37.12648 -34.44032 -33.68746 -31.94537 -31.02454 -28.63301 -27.82899 -26.83668 -26.43752 -25.91083 -24.03389 -23.97859 -22.02885 -21.80798 -21.17984 -19.75828 -19.06566 -18.57708 -18.33323 -17.86082 -17.76805 -17.05552 -16.92396 -16.65134 -16.49497 -16.24020 -16.15625 -15.87565 -15.71821 -15.37542 -15.07957 -14.65831 -14.59260 -14.52956 -14.21445 -13.59248 -13.52313 -13.50283 -13.43409 -13.27128 -12.82047 -12.48710 -12.30872 -12.27921 -12.21278 -12.13436 -11.92290 -11.66720 -11.56887 -11.05111 -10.61459 -10.51848 -10.34250 -9.85917 -9.03352 -4.88847 -0.70869 0.07409 0.57664 1.14146 1.30090 1.59538 1.82393 1.83075 1.97964 2.11941 2.37047 2.86705 3.16066 3.34634 3.40018 3.47318 3.53392 3.63942 3.72595 3.78111 3.84557 3.84863 3.96084 4.14847 4.26423 4.31777 4.41318 4.42326 4.48016 4.49591 4.54290 4.64732 4.67392 4.75732 4.80989 4.82019 4.84531 4.86465 4.90311 4.94139 5.02604 5.18657 5.24213 5.36007 5.56114 6.14166 6.23596 6.26794 6.49700 6.74883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.334 6.334 3 C 0.137 3.863 4 C 0.021 3.979 5 O -0.182 6.182 6 C -0.035 4.035 7 C 0.604 3.396 8 O -0.544 6.544 9 N -0.692 5.692 10 C 0.119 3.881 11 H 0.118 0.882 12 C -0.167 4.167 13 C 0.064 3.936 14 H 0.109 0.891 15 O -0.397 6.397 16 C 0.023 3.977 17 C -0.135 4.135 18 C -0.111 4.111 19 C -0.096 4.096 20 C -0.099 4.099 21 C -0.090 4.090 22 O -0.548 6.548 23 Si 0.783 3.217 24 C -0.088 4.088 25 C -0.165 4.165 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.417 0.583 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.173 0.827 38 H 0.115 0.885 39 H 0.386 0.614 40 H -0.305 1.305 41 H -0.262 1.262 42 H 0.166 0.834 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.113 -1.773 1.442 6.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.091 3.909 4 C -0.027 4.027 5 O -0.084 6.084 6 C -0.085 4.085 7 C 0.390 3.610 8 O -0.423 6.423 9 N -0.342 5.342 10 C 0.015 3.985 11 H 0.135 0.865 12 C -0.206 4.206 13 C 0.006 3.994 14 H 0.127 0.873 15 O -0.316 6.316 16 C -0.073 4.073 17 C -0.173 4.173 18 C -0.131 4.131 19 C -0.097 4.097 20 C -0.100 4.100 21 C -0.197 4.197 22 O -0.356 6.356 23 Si 0.686 3.314 24 C -0.106 4.106 25 C -0.183 4.183 26 H 0.092 0.908 27 H 0.133 0.867 28 H 0.096 0.904 29 H 0.254 0.746 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.190 0.810 38 H 0.133 0.867 39 H 0.236 0.764 40 H -0.233 1.233 41 H -0.187 1.187 42 H 0.183 0.817 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.375 -1.219 1.528 5.719 hybrid contribution 0.226 -0.325 -1.132 1.200 sum -5.149 -1.544 0.396 5.390 Atomic orbital electron populations 1.23488 0.75287 1.06017 1.03190 1.86149 1.24346 1.25855 1.88435 1.17992 0.86090 0.86871 0.99947 1.19230 0.88259 0.87129 1.08110 1.84014 1.12733 1.35108 1.76520 1.21929 0.84002 0.92759 1.09811 1.16702 0.85072 0.82765 0.76472 1.90884 1.31343 1.68211 1.51865 1.45812 1.10873 1.04916 1.72625 1.22404 0.86197 0.91967 0.97979 0.86454 1.24045 1.02475 0.96772 0.97317 1.23590 0.99431 0.82650 0.93745 0.87286 1.87911 1.33653 1.32328 1.77699 1.22972 0.88844 0.96834 0.98657 1.23582 1.01753 0.92533 0.99421 1.22862 0.95433 0.94356 1.00479 1.19574 0.92300 0.92798 1.05039 1.19558 0.93473 0.93863 1.03126 1.25397 1.07759 0.98629 0.87959 1.86606 1.38965 1.92781 1.17246 0.93868 0.75414 0.73404 0.88738 1.20891 0.92913 0.98832 0.97952 1.21379 1.01821 0.89558 1.05557 0.90785 0.86682 0.90428 0.74569 0.90403 0.89264 0.93345 0.88946 0.92779 0.88286 0.88536 0.80985 0.86724 0.76433 1.23326 1.18743 0.81679 0.80248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.97 10.50 -93.16 -0.98 -1.95 16 3 C 0.14 0.46 6.70 22.57 0.15 0.61 16 4 C 0.02 0.16 7.35 23.14 0.17 0.33 16 5 O -0.18 -1.65 10.28 -13.40 -0.14 -1.79 16 6 C -0.03 -0.32 7.07 24.00 0.17 -0.15 16 7 C 0.60 5.50 7.80 86.54 0.67 6.18 16 8 O -0.54 -8.01 16.44 -4.19 -0.07 -8.07 16 9 N -0.69 -2.40 5.36 -443.70 -2.38 -4.78 16 10 C 0.12 0.16 4.21 45.52 0.19 0.35 16 11 H 0.12 0.32 7.50 -2.39 -0.02 0.30 16 12 C -0.17 -0.19 7.73 31.21 0.24 0.06 16 13 C 0.06 -0.02 4.32 31.21 0.13 0.11 16 14 H 0.11 -0.39 7.87 -2.39 -0.02 -0.41 16 15 O -0.40 -1.32 10.72 -148.98 -1.60 -2.91 16 16 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 17 C -0.13 0.21 7.66 31.12 0.24 0.45 16 18 C -0.11 -0.95 10.68 23.79 0.25 -0.70 16 19 C -0.10 -0.63 6.16 -20.25 -0.12 -0.76 16 20 C -0.10 -0.14 5.26 -19.87 -0.10 -0.25 16 21 C -0.09 -0.03 2.70 71.24 0.19 0.16 16 22 O -0.55 -2.04 12.88 -148.98 -1.92 -3.96 16 23 Si 0.78 -2.98 30.25 68.60 2.08 -0.91 16 24 C -0.09 0.28 8.62 22.02 0.19 0.47 16 25 C -0.16 0.49 9.03 22.40 0.20 0.69 16 26 H 0.07 -0.70 7.66 -2.39 -0.02 -0.72 16 27 H 0.11 -1.03 8.14 -2.39 -0.02 -1.04 16 28 H 0.08 -0.77 7.66 -2.39 -0.02 -0.79 16 29 H 0.42 0.22 8.43 -92.71 -0.78 -0.56 16 30 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.05 -0.20 8.14 -2.38 -0.02 -0.22 16 35 H 0.10 -0.13 8.11 -2.39 -0.02 -0.15 16 36 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 38 H 0.11 0.05 7.96 -2.39 -0.02 0.03 16 39 H 0.39 -1.06 8.70 -74.06 -0.64 -1.70 16 40 H -0.30 -1.43 7.11 99.48 0.71 -0.72 16 41 H -0.26 0.81 6.69 99.48 0.67 1.47 16 42 H 0.17 -1.39 4.81 -2.91 -0.01 -1.41 16 43 H 0.18 -1.80 6.26 -2.91 -0.02 -1.82 16 Total: 0.00 -21.10 366.18 -0.44 -21.54 By element: Atomic # 1 Polarization: -6.59 SS G_CDS: -0.36 Total: -6.95 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 4.92 Total: 9.78 kcal Atomic # 7 Polarization: -2.40 SS G_CDS: -2.38 Total: -4.78 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -4.70 Total: -18.68 kcal Atomic # 14 Polarization: -2.98 SS G_CDS: 2.08 Total: -0.91 kcal Total: -21.10 -0.44 -21.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_6672420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.866 kcal (2) G-P(sol) polarization free energy of solvation -21.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds