Wall clock time and date at job start Mon Mar 8 2021 04:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00409 * 2 1 4 4 H 1.09008 * 112.84659 * 341.19300 * 3 2 1 5 5 C 1.53775 * 113.69245 * 112.46457 * 3 2 1 6 6 C 1.53779 * 87.08438 * 139.99471 * 5 3 2 7 7 H 1.09002 * 113.61731 * 89.11293 * 6 5 3 8 8 N 1.46500 * 113.68825 * 220.00754 * 6 5 3 9 9 C 1.34778 * 119.99919 * 254.05902 * 8 6 5 10 10 O 1.21701 * 120.00048 * 0.02562 * 9 8 6 11 11 C 1.46584 * 119.99949 * 180.02562 * 9 8 6 12 12 C 1.36651 * 125.45631 * 179.71959 * 11 9 8 13 13 C 1.37473 * 113.29354 * 179.83944 * 12 11 9 14 14 C 1.50695 * 122.45025 * 180.17996 * 13 12 11 15 15 C 1.33822 * 115.10424 * 0.45369 * 13 12 11 16 16 C 1.50696 * 124.52602 * 179.77173 * 15 13 12 17 17 O 1.42903 * 109.46663 * 329.99874 * 16 15 13 18 18 Si 1.86301 * 109.47009 * 210.00112 * 16 15 13 19 19 S 1.70620 * 110.95216 * 359.74925 * 15 13 12 20 20 C 1.53777 * 113.61697 * 210.00061 * 3 2 1 21 21 H 1.08998 * 109.47668 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47186 * 300.00819 * 1 2 3 23 23 H 1.09008 * 109.46734 * 60.00133 * 1 2 3 24 24 H 1.08993 * 113.61636 * 25.43835 * 5 3 2 25 25 H 1.09008 * 113.61006 * 254.54078 * 5 3 2 26 26 H 0.96998 * 119.99853 * 74.06469 * 8 6 5 27 27 H 1.07993 * 123.34866 * 0.02562 * 12 11 9 28 28 H 1.09001 * 109.47605 * 270.29228 * 14 13 12 29 29 H 1.09008 * 109.47039 * 30.29407 * 14 13 12 30 30 H 1.08993 * 109.47603 * 150.29363 * 14 13 12 31 31 H 1.08993 * 109.47396 * 90.00046 * 16 15 13 32 32 H 0.96700 * 114.00222 * 300.00093 * 17 16 15 33 33 H 1.48507 * 109.99706 * 179.97438 * 18 16 15 34 34 H 1.48495 * 109.99984 * 301.31656 * 18 16 15 35 35 H 1.08997 * 113.61941 * 105.38035 * 20 3 2 36 36 H 1.09009 * 113.68972 * 334.49114 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3137 2.0789 -0.3239 5 6 2.7532 1.6510 1.3013 6 6 3.8221 2.3198 0.4210 7 1 3.6209 3.3706 0.2123 8 7 5.1936 2.0830 0.8783 9 6 5.8831 3.0717 1.4810 10 8 5.3663 4.1612 1.6459 11 6 7.2556 2.8350 1.9381 12 6 8.0556 3.7553 2.5548 13 6 9.2977 3.2644 2.8808 14 6 10.3427 4.1024 3.5711 15 6 9.5130 1.9896 2.5351 16 6 10.7972 1.2420 2.7854 17 8 11.8935 2.1585 2.7652 18 14 11.0370 -0.0425 1.4575 19 16 8.1391 1.3236 1.7736 20 6 3.3755 1.3718 -0.7045 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 3.1168 0.7771 1.8418 25 1 2.2132 2.3503 1.9397 26 1 5.6054 1.2146 0.7471 27 1 7.7422 4.7665 2.7678 28 1 10.9512 4.6124 2.8243 29 1 9.8543 4.8405 4.2076 30 1 10.9784 3.4607 4.1810 31 1 10.7497 0.7538 3.7588 32 1 11.9965 2.6301 1.9273 33 1 12.3006 -0.7864 1.6927 34 1 9.8878 -0.9829 1.4472 35 1 3.3382 1.8456 -1.6854 36 1 3.9105 0.4220 -0.7133 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9984030_6739946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:12:06 Heat of formation + Delta-G solvation = -52.118370 kcal Electronic energy + Delta-G solvation = -19847.875942 eV Core-core repulsion = 16619.431163 eV Total energy + Delta-G solvation = -3228.444779 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 284.091 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29010 -40.24925 -39.50576 -37.48983 -37.12928 -34.26493 -32.04322 -30.26368 -28.00104 -26.92963 -26.74096 -25.04787 -23.89517 -21.76100 -21.18470 -20.12855 -19.31253 -18.34606 -17.56115 -17.31046 -16.83974 -16.49569 -16.40898 -16.24088 -15.85701 -15.56249 -15.13620 -14.88738 -14.58775 -14.44566 -13.99183 -13.58431 -13.53772 -13.49191 -13.10751 -12.98459 -12.84081 -12.47377 -12.31726 -12.22836 -12.16776 -11.91545 -11.77719 -11.04662 -10.74445 -10.53086 -10.15572 -9.68809 -9.45673 -5.20778 -0.63169 0.27152 0.69340 1.05985 1.31964 1.44277 1.80915 1.97219 2.16567 2.85207 3.21678 3.34462 3.46497 3.53415 3.70441 3.75875 3.82038 4.09242 4.22045 4.24869 4.40107 4.40995 4.42182 4.57443 4.62505 4.64510 4.72866 4.78664 4.83094 4.84920 4.91663 4.99757 5.03144 5.37858 5.40509 5.44969 6.17735 6.35485 6.35843 7.09090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.065 3.935 4 H 0.094 0.906 5 C -0.169 4.169 6 C 0.125 3.875 7 H 0.122 0.878 8 N -0.715 5.715 9 C 0.594 3.406 10 O -0.525 6.525 11 C -0.263 4.263 12 C -0.046 4.046 13 C -0.091 4.091 14 C -0.096 4.096 15 C -0.236 4.236 16 C -0.027 4.027 17 O -0.529 6.529 18 Si 0.659 3.341 19 S 0.194 5.806 20 C -0.144 4.144 21 H 0.087 0.913 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.400 0.600 27 H 0.155 0.845 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.381 0.619 33 H -0.234 1.234 34 H -0.237 1.237 35 H 0.084 0.916 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -1.426 -3.005 3.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.006 3.994 4 H 0.112 0.888 5 C -0.208 4.208 6 C 0.020 3.980 7 H 0.140 0.860 8 N -0.366 5.366 9 C 0.381 3.619 10 O -0.403 6.403 11 C -0.383 4.383 12 C -0.079 4.079 13 C -0.104 4.104 14 C -0.154 4.154 15 C -0.356 4.356 16 C -0.140 4.140 17 O -0.335 6.335 18 Si 0.558 3.442 19 S 0.462 5.538 20 C -0.182 4.182 21 H 0.105 0.895 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.113 0.887 25 H 0.096 0.904 26 H 0.235 0.765 27 H 0.173 0.827 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.141 0.859 32 H 0.229 0.771 33 H -0.157 1.157 34 H -0.161 1.161 35 H 0.103 0.897 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.095 -3.342 -3.098 4.558 hybrid contribution 0.025 1.337 1.150 1.763 sum -0.070 -2.006 -1.948 2.797 Atomic orbital electron populations 1.22834 0.80704 1.03083 1.00173 1.87938 1.20047 1.26819 1.94550 1.23441 0.93726 0.85858 0.96388 0.88823 1.24031 0.97417 1.01486 0.97881 1.22253 0.79937 1.00721 0.95044 0.86024 1.45771 1.15138 1.14803 1.60848 1.16973 0.83570 0.84210 0.77176 1.90853 1.69480 1.24007 1.55929 1.24568 0.99659 0.99537 1.14562 1.20746 0.91670 1.00409 0.95043 1.18723 0.96188 0.93957 1.01489 1.20645 0.96180 0.98610 0.99986 1.24478 1.02503 1.00020 1.08565 1.24466 0.82497 0.98066 1.08998 1.86532 1.47573 1.58488 1.40921 0.94803 0.83201 0.79663 0.86518 1.83050 1.03815 1.12065 1.54851 1.23631 0.95734 1.00358 0.98487 0.89452 0.93827 0.93771 0.88695 0.90400 0.76522 0.82698 0.90889 0.91916 0.89680 0.85882 0.77093 1.15715 1.16119 0.89724 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 101.05 1.10 1.07 16 2 O -0.38 -0.51 10.72 -35.23 -0.38 -0.89 16 3 C 0.06 -0.03 4.31 -25.92 -0.11 -0.14 16 4 H 0.09 -0.16 7.87 -51.92 -0.41 -0.57 16 5 C -0.17 -0.01 7.71 -25.92 -0.20 -0.21 16 6 C 0.13 0.00 4.22 -67.12 -0.28 -0.28 16 7 H 0.12 0.10 7.50 -51.93 -0.39 -0.29 16 8 N -0.71 -0.31 5.36 -54.35 -0.29 -0.60 16 9 C 0.59 1.79 7.78 -12.89 -0.10 1.69 16 10 O -0.53 -3.38 16.46 5.19 0.09 -3.30 16 11 C -0.26 -0.43 6.45 -36.79 -0.24 -0.67 16 12 C -0.05 -0.07 9.80 -40.43 -0.40 -0.47 16 13 C -0.09 -0.03 5.75 -106.45 -0.61 -0.64 16 14 C -0.10 0.07 8.67 36.00 0.31 0.39 16 15 C -0.24 0.09 5.53 -35.86 -0.20 -0.11 16 16 C -0.03 0.04 2.76 36.00 0.10 0.14 16 17 O -0.53 0.77 9.85 -35.23 -0.35 0.42 16 18 Si 0.66 -1.29 31.32 -169.99 -5.32 -6.61 16 19 S 0.19 -0.11 19.79 -107.50 -2.13 -2.24 16 20 C -0.14 0.18 7.66 -25.92 -0.20 -0.02 16 21 H 0.09 -0.14 8.14 -51.93 -0.42 -0.57 16 22 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 23 H 0.04 -0.08 8.14 -51.92 -0.42 -0.50 16 24 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 25 H 0.08 0.02 8.14 -51.92 -0.42 -0.40 16 26 H 0.40 -0.60 7.83 -40.82 -0.32 -0.92 16 27 H 0.16 0.23 8.06 -52.49 -0.42 -0.20 16 28 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 29 H 0.06 -0.05 8.13 -51.92 -0.42 -0.47 16 30 H 0.08 0.00 6.41 -51.93 -0.33 -0.34 16 31 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.38 -1.82 8.66 45.56 0.39 -1.43 16 33 H -0.23 -0.20 7.11 56.52 0.40 0.20 16 34 H -0.24 0.07 7.09 56.52 0.40 0.47 16 35 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 36 H 0.10 -0.14 8.11 -51.92 -0.42 -0.56 16 LS Contribution 316.71 15.07 4.77 4.77 Total: 0.00 -6.50 316.71 -9.33 -15.83 By element: Atomic # 1 Polarization: -3.23 SS G_CDS: -4.89 Total: -8.13 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.83 Total: 0.74 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: -0.29 Total: -0.60 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: -0.64 Total: -3.76 kcal Atomic # 14 Polarization: -1.29 SS G_CDS: -5.32 Total: -6.61 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.13 Total: -2.24 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -6.50 -9.33 -15.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9984030_6739946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.292 kcal (2) G-P(sol) polarization free energy of solvation -6.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds